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From 2013.igem.org

<?xml version="1.0" encoding="ISO-8859-1"?>

<sim>

<yscale>1300</yscale>

<volume>0.7</volume> <timestep>0.0001</timestep> <alpha>7.4e-7</alpha>

<molecule name="PGV" quantity="50"/> <molecule name="PGVa"/> <molecule name="PGR" quantity="50"/> <molecule name="PGR1"/> <molecule name="PGR2"/> <molecule name="FNR" curve_show="true" curve_color="#0000FF" quantity="1226"/> <molecule name="FNRo"/> <molecule name="FNRoo"/> <molecule name="DFNR"/> <molecule name="DFNRa" curve_show="true" curve_color="#AAAA00"/> <molecule name="DFNR1"/> <molecule name="DFNR2"/> <molecule name="DFNR3"/> <molecule name="O2" const="true" adjustable="true" quantity="5000"/> <molecule name="PV" curve_show="true" curve_color="#00AA00"/> <molecule name="PR" curve_show="true" curve_color="#FF0000"/> <molecule name="DEG" quantity="100"/>

<reaction probability="0.05">

<in>FNR</in>
<in>FNR</in>
<out>DFNRa</out>

</reaction>

<reaction probability="0.05">

<in>DFNRa</in>
<in>O2</in>
<out>DFNR1</out>

</reaction> <reaction probability="0.05">

<in>DFNR1</in>
<in>O2</in>
<out>DFNR2</out>

</reaction> <reaction probability="0.05">

<in>DFNR2</in>
<in>O2</in>
<out>DFNR3</out>

</reaction> <reaction probability="0.05">

<in>DFNR3</in>
<in>O2</in>
<out>DFNR</out>

</reaction>

<reaction probability="0.005">

<in>DFNR</in>
<out>FNRoo</out>
<out>FNRoo</out>

</reaction> <reaction probability="1">

<in>FNRoo</in>
<out>FNRo</out>
<out>O2</out>

</reaction> <reaction probability="1">

<in>FNRo</in>
<out>FNR</out>
<out>O2</out>

</reaction>

<reaction probability="0.8">

<in>PGV</in>
<in>DFNRa</in>
<out>PGVa</out>

</reaction> <reaction probability="0.0001">

<in>PGVa</in>
<out>PGV</out>
<out>DFNRa</out>

</reaction>

<reaction probability="0.0001">

<in>PGVa</in>
<out>PGVa</out>
<out>PV</out>

</reaction>

<reaction probability="0.8">

<in>PGR</in>
<in>DFNRa</in>
<out>PGR1</out>

</reaction> <reaction probability="0.0001">

<in>PGR1</in>
<out>PGR</out>
<out>DFNRa</out>

</reaction>

<reaction probability="0.8">

<in>PGR1</in>
<in>DFNRa</in>
<out>PGR2</out>

</reaction> <reaction probability="0.0001">

<in>PGR2</in>
<out>PGR1</out>
<out>DFNRa</out>

</reaction>

<reaction probability="0.0001">

<in>PGR</in>
<out>PGR</out>
<out>PR</out>

</reaction> <reaction probability="0.0001">

<in>PGR1</in>
<out>PGR1</out>
<out>PR</out>

</reaction>

<reaction probability="0.1">

<in>DEG</in>
<in>PV</in>
<out>DEG</out>

</reaction> <reaction probability="0.1">

<in>DEG</in>
<in>PR</in>
<out>DEG</out>

</reaction>

</sim>