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Template:Kyoto/Notebook/Aug 22
From 2013.igem.org
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[[File:igku_xxxxxx.xxx]]<br> | [[File:igku_xxxxxx.xxx]]<br> | ||
| + | </div> | ||
| + | |||
| + | ===Miniprep=== | ||
| + | <div class="experiment"> | ||
| + | <span class="author">Ashida</span> | ||
| + | {|class="wikitable" | ||
| + | !DNA||concentration[µg/mL]||260/280||260/230 | ||
| + | |- | ||
| + | |8/22 RBS-lysis (1)||128||1.77||2.29 | ||
| + | |- | ||
| + | |8/22 RBS-lysis (2)||96||1.80||2.07 | ||
| + | |- | ||
| + | |8/22 pSB1C3 (1)||108||1.55||1.45 | ||
| + | |- | ||
| + | |8/22 pSB1C3 (2)||130||1.69||1.76 | ||
| + | |} | ||
</div> | </div> | ||
Revision as of 02:59, 25 September 2013
Contents |
Aug 22
Liquid culture
| Sample | Medium |
|---|---|
| 8/21 Pcon-RBS-GFP-DT-Pcon-RBS-luxR-DT (1) | 8/21 Plusgrow medium (+Amp) |
| 8/21 Pcon-RBS-GFP-DT-Pcon-RBS-luxR-DT (2) | 8/21 Plusgrow medium (+Amp) |
| 8/21 Pcon-RBS-GFP-DT control (1) | 8/21 Plusgrow medium (+Amp) |
| 8/21 Pcon-RBS-GFP-DT control (2) | 8/21 Plusgrow medium (+Amp) |
| 8/21 RBS-lysis1 (1) | 8/21 Plusgrow medium (+Amp) |
| 8/21 RBS-lysis1 (2) | 8/21 Plusgrow medium (+Amp) |
| 8/21 RBS control (1) | 8/21 Plusgrow medium (+Amp) |
| 8/21 RBS control (2) | 8/21 Plusgrow medium (+Amp) |
| 8/21 Ptet(pm)-RBS-tetR-DT (1) | 8/21 Plusgrow medium (+Amp) |
| 8/21 Ptet(pm)-RBS-tetR-DT (2) | 8/21 Plusgrow medium (+Amp) |
| 8/21 Ptet(pm) control (1) | 8/21 Plusgrow medium (+Amp) |
| 8/21 Ptet(pm) control (2) | 8/21 Plusgrow medium (+Amp) |
| 8/21 Plux-RBS-GFP-DT (1) | 8/21 Plusgrow medium (+Amp) |
| 8/21 pSB1C3(BBa_J04450) (1) | 8/21 Plusgrow medium (+Amp) |
| 8/21 pSB1C3(BBa_J04450) (2) | 8/21 Plusgrow medium (+Amp) |
incubate 37°C 10hour
Colony PCR
| Sample | base pair |
|---|---|
| 8/21 RBS-lysis1(1) | 400 |
| 8/21 RBS-lysis1(2) | 400 |
| 8/21 RBS control(1) | -- |
| 8/21 RBS control(2) | -- |
| negative control | -- |
| PreDenature | Denature | Annealing | Extension | cycle |
|---|---|---|---|---|
| 94°C | 94°C | 55°C | 68°C | -- |
| 5min | 30s | 30s | 30s | 30cycles |
| Sample | base pair |
|---|---|
| 8/21 Pcon-GFP-DT-Pcon-RBS-luxR-DT (1) | 2143 |
| 8/21 Pcon-GFP-DT-Pcon-RBS-luxR-DT (2) | 2143 |
| 8/21 Pcon-RBS-luxR control(1) | -- |
| 8/21 Pcon-RBS-luxR control(2) | -- |
| negative control | -- |
| PreDenature | Denature | Annealing | Extension | cycle |
|---|---|---|---|---|
| 94°C | 94°C | 55°C | 68°C | -- |
| 5min | 30s | 30s | 2min | 30cycles |
| Sample | base pair |
|---|---|
| 8/21 Ptet-RBS-tetR-DT (1) | 1216 |
| 8/21 Ptet-RBS-tetR-DT (2) | 1216 |
| 8/21 Ptet control (1) | -- |
| 8/21 Ptet control (2) | -- |
| 8/21 Plux-RBS-GFP-DT (1) | 1227 |
| 8/21 pSB1C3(BBa_J04450) (1) | 1353 |
| 8/21 pSB1C3(BBa_J04450) (2) | 1353 |
| negative control | -- |
| PreDenature | Denature | Annealing | Extension | cycle |
|---|---|---|---|---|
| 94°C | 94°C | 55°C | 68°C | -- |
| 5min | 30s | 30s | 1min | 30cycles |
Electrophoresis
| Lane | Sample |
|---|---|
| 1 | 100bp ladder |
| 2 | RBS-lysis1 -(1) |
| 3 | RBS-lysis1 -(2) |
| 4 | RBS-lysis2 -(1) |
| 5 | RBS-lysis2 -(2) |
| 6 | RBS(NC) -(1) |
| 7 | RBS(NC) -(1) |
| 8 | NC |
| Lane | Sample |
|---|---|
| 1 | 1kb ladder |
| 2 | Ptet-RBS-tetR-DT -(1) |
| 3 | Ptet-RBS-tetR-DT -(2) |
| 4 | Ptet(NC) -(1) |
| 5 | Ptet(NC) -(2) |
| 6 | Plux-RBS-GFP-DT -(1) |
| 7 | pSB1C3 -(1) |
| 8 | pSB1C3 -(2) |
| 9 | NC |
| Lane | Sample |
|---|---|
| 1 | 1kb ladder |
| 2 | Pcon-RBS-GFP-DT-Pcon-RBS-luxR-DT -(1) |
| 3 | Pcon-RBS-GFP-DT-Pcon-RBS-luxR-DT -(2) |
| 4 | Pcon-RBS-luxR -(1) |
| 5 | Pcon-RBS-luxR -(2) |
| 6 | NC |
| 7 | 1kb ladder |
Miniprep
| DNA | concentration[µg/mL] | 260/280 | 260/230 |
|---|---|---|---|
| 8/22 RBS-lysis (1) | 128 | 1.77 | 2.29 |
| 8/22 RBS-lysis (2) | 96 | 1.80 | 2.07 |
| 8/22 pSB1C3 (1) | 108 | 1.55 | 1.45 |
| 8/22 pSB1C3 (2) | 130 | 1.69 | 1.76 |
Electrophoresis
| Lane | Sample | Enzyme1 | Enzyme2 |
|---|---|---|---|
| 1 | 100bp | -- | -- |
| 2 | 8/22 pT181 attenuator (1) | EcoRI | SpeI |
| 3 | 8/22 pT181 attenuator (1) | EcoRI | -- |
| 4 | 8/22 pT181 attenuator (1) | -- | SpeI |
| 5 | 8/22 pT181 attenuator (1) | -- | -- |
| 6 | 8/22 pT181 attenuator (1) | XbaI | PstI |
| 7 | 8/22 pT181 attenuator (1) | XbaI | -- |
| 8 | 8/22 pT181 attenuator (1) | -- | PstI |
| 9 | 8/22 pT181 attenuator (1) | -- | -- |
| 10 | 8/22 Fusion6 antisense (1) | EcoRI | SpeI |
| 11 | 8/22 Fusion6 antisense (1) | EcoRI | -- |
| 12 | 8/22 Fusion6 antisense (1) | -- | SpeI |
| 13 | 8/22 Fusion6 antisense (1) | -- | -- |
| 14 | 100bp | -- | -- |
| Lane | Sample | Enzyme1 | Enzyme2 |
|---|---|---|---|
| 1 | 100bp | -- | -- |
| 2 | 8/22 Fusion6 antisense (1) | XbaI | PstI |
| 3 | 8/22 Fusion6 antisense (1) | XbaI | -- |
| 4 | 8/22 Fusion6 antisense (1) | -- | PstI |
| 5 | 8/22 Fusion6 antisense (1) | -- | -- |
| 6 | 8/22 Fusion1 antisense (1) | EcoRI | SpeI |
| 7 | 8/22 Fusion1 antisense (1) | EcoRI | -- |
| 8 | 8/22 Fusion1 antisense (1) | -- | SpeI |
| 9 | 8/22 Fusion1 antisense (1) | -- | -- |
| 10 | 8/22 Fusion1 antisense (1) | XbaI | PstI |
| 11 | 8/22 Fusion1 antisense (1) | XbaI | -- |
| 12 | 8/22 Fusion1 antisense (1) | -- | PstI |
| 13 | 8/22 Fusion1 antisense (1) | -- | -- |
| 14 | 100bp | -- | -- |
