Team:TU-Eindhoven/Notebook

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Revision as of 18:55, 6 August 2013

In this section you can find a small description of all the work we have done so far organized by the category it belongs to.

Feb-Apr

Feb-Mar

Background research

Mar-Apr

Selection of topic
Further research
Selection of project

Apr-May

Further research

May

1-5 May

General Activities

Regular team meeting
Looking for sponsors
Month planning

Wetlab

Researching about the promoters
Researching about the possible proteins for CEST imaging

Drylab

Defining what needs to be modeled and what type of model is the most appropriate for it

6-12 May

General Activities

Regular team meeting
Looking for sponsors

Wetlab

Researching and defining the killing mechanism

Drylab

Starting the Molecular Dynamics model for the proteins selection.

13-19 May

General Activities

Regular team meeting
Looking for sponsors

Wetlab

Defining the needed materials
Defining the needed equipment

Drylab

Continuing the Molecular Dynamics model for the proteins selection.

20-26 May

General Activities

Regular team meeting
Looking for sponsors

Wetlab

Locating, booking and learning how to use the necessary equipment

Drylab

Analyzing the results from the Molecular Dynamics model for the proteins selection and identifying the most useful proteins for CEST imaging
Researching and defining the needed parameters for the analysis of the decoy sites through a stochastic simulations model

27-31 May

General Activities

Regular team meeting
Looking for sponsors

Wetlab

Locating, booking and learning how to use the necessary equipment

Drylab

Starting the stochastic simulations for the analysis of the decoy sites

June

3-9 June

General Activities

Regular team meeting
Looking for sponsors
Collaborating with Purdue iGEM team
Planning month activities

Wetlab

General construct design

Drylab

Continuing the stochastic simulations for the analysis of the decoy sites

10-16 June

General Activities

Regular team meeting
Looking for sponsors

Wetlab

Protein design

Drylab

Continuing the stochastic simulations for the analysis of the decoy sites

17-23 June

General Activities

Regular team meeting
Looking for sponsors

Wetlab

Final design of the constructs

Drylab

Continuing the stochastic simulations for the analysis of the decoy sites

24-30 June

General Activities

Regular team meeting
Looking for sponsors

Wetlab

Ordering the constructs
Working on the protocols

Drylab

Analyzing the results from the stochastic simulations for the analysis of the decoy sites

July

1-7 July

General Activities

Regular team meeting
Looking for sponsors
Planning month activities

Wetlab

Finalizing the protocols
Planning lab schedule

Drylab

Starting the ODE model for the analysis of the FNR promoter

8-14 July

General Activities

Regular team meeting
Looking for sponsors
Collaborating with Purdue iGEM team

Drylab

Continuing the ODE model for the analysis of the FNR promoter

15-21 July

22-28 July

General Activities

Regular team meetings
Looking for sponsors
Collaborating with Purdue iGEM team

Wetlab

Creating agar plates
Transforming DNA
Plating bacteria
Making LB medium
Creating small cultures
DNA retention from cultures
Nano-drop tests

Drylab

Analyzing the results from the ODE model for the analysis of the FNR promoter

29-31 July

General Activities

Regular team meetings
Looking for sponsors

Wetlab

Creating agar plates
Transforming DNA
Plating bacteria
Making LB medium
Creating small cultures
DNA retention from cultures
Nano-drop tests

Drylab

Merging the stochastic simulations model for the decoy sites with the ODE model for the FNR promoter

August

1-4 August

...

5-11 August

...

12-18 August

...

19-25 August

...

26-31 August

...

September

2-8 September

...

9-15 September

...

16-22 September

...

23-29 September

...

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