Team:Evry/Chelator

From 2013.igem.org

(Difference between revisions)
Line 197: Line 197:
<p>Further more, sequencing results of our plasmids has shown that among the two theorical possibilities, only one of them was obtained in all the clones we have tested.  This combination were characterised by a switch in the parts' order, leading to a non functional siderophore production system. Therefore, we came to the conclusion that our functional system, as we engineered it, was probably toxic for our bacteria.
<p>Further more, sequencing results of our plasmids has shown that among the two theorical possibilities, only one of them was obtained in all the clones we have tested.  This combination were characterised by a switch in the parts' order, leading to a non functional siderophore production system. Therefore, we came to the conclusion that our functional system, as we engineered it, was probably toxic for our bacteria.
</p>
</p>
-
<p>Thus, we have conceived new cloning approaches.  
+
<p>Thus, we have conceived new cloning approaches. First of all,
</p>
</p>

Revision as of 00:50, 5 October 2013

Iron coli project

Iron Chelator

First strategy for enterobactin biosynthesis

Here we present Fig 1 and 2 our constructions which contain each three Lac I regulated enterobactin synthesis genes. Escherichia coli naturally have those genes into a single operon but due to their important lenghts, we decided to divide them into two indivudual constructions in order to make the cloning easier.

Fig 1 First construction containing the Lac I regulated enterobactin synthesis genes Ent A, Ent D and Ent F. Genes fusions were made with flanking restriction sites that are compatible with Biobrick-based cloning.


Fig 2 Second construction containing the Lac I regulated enterobactin synthesis genes Ent B, Ent C and Ent E. Genes fusions were made with flanking restriction sites that are compatible with Biobrick-based cloning.

NAME FIGURE Description

Lac promoter

Lac Promoter

RBS + EntA

First gene required for enterobactin sythesis

RBS + EntB

Second gene required for enterobactin sythesis

RBS + EntC

Third gene required for enterobactin sythesis

RBS + EntD

Fourth gene required for enterobactin sythesis

RBS + EntE

Fifth gene required for enterobactin sythesis

RBS + EntF

Sixth gene required for enterobactin synthesis

Terminator

Transcription Stop signal

Plasmid

Backbone with ampicillin resistance

Table 1. Genetic elements used to produce the enterobactin siderophore.

Second strategy for enterobactin biosynthesis

Even though we tried to simplify the cloning, our many attemps to obtain the constructions failed. We thus investigated every step of our cloning in order to determine why it did not work. We finally assumed that these failures were due to several reasons.

First,the design of the overhangs' parts for the golden gate assembly had not been thorougly conceived. Indeed, two differents combination in the parts' order were actually possible.

Further more, sequencing results of our plasmids has shown that among the two theorical possibilities, only one of them was obtained in all the clones we have tested. This combination were characterised by a switch in the parts' order, leading to a non functional siderophore production system. Therefore, we came to the conclusion that our functional system, as we engineered it, was probably toxic for our bacteria.

Thus, we have conceived new cloning approaches. First of all,

HCversion
Figure 1: Légende ici.

Future caracterisation of the construction