Team:Penn/MaGellinToolbox

From 2013.igem.org

(Difference between revisions)
 
(4 intermediate revisions not shown)
Line 30: Line 30:
</br>
</br>
</br>
</br>
-
<b>Constructing a Toolbox</b>Our goal was to create a toolbox for developing customized site-specific methylases. Like any good toolbox, it includes three components: the tool, the assay, and the automation.
+
For a detailed, graphical explanation of the MaGellin work flow, please download the <a href="https://static.igem.org/mediawiki/2013/e/e5/Spec_Sheet.pdf">MaGellin Workflow Specifications Sheet</a>, which includes all of the steps in the MaGellin workflow.
 +
</br>
 +
</br>
 +
</br>
 +
<h4><b>Constructing a Toolbox</b></h4>Our goal was to create a toolbox for developing customized site-specific methylases. Like any good toolbox, it includes three components: the tool, the assay, and the automation.
<ol>
<ol>
<li>The Tool: a fusion between a DNA binding domain and a methylase enzyme</li>
<li>The Tool: a fusion between a DNA binding domain and a methylase enzyme</li>
Line 53: Line 57:
</br>
</br>
</br>
</br>
-
</br>
+
 
 +
<center><a href="https://2013.igem.org/Team:Penn/MaGellinMotivation">&#8592;Previous</a> <a href="https://2013.igem.org/Team:Penn/AssayOverview">Next&#8594;</a></center>
         </div>
         </div>
     </div>
     </div>
 +
<div id ="pagefooter">
 +
<br>
 +
<br>
 +
<center><a href = "https://2013.igem.org/Team:Penn"> Home  </a> <a href = "https://static.igem.org/mediawiki/2013/e/e5/Spec_Sheet.pdf" >Spec Sheet</a> <a href = "https://2013.igem.org/Team:Penn/sitemap" >Sitemap</a>
 +
</center>
 +
<br>
 +
Penn iGem &copy; 2013
 +
</div>
    
    
</body>
</body>

Latest revision as of 20:11, 28 October 2013

Penn iGEM

Toolbox




For a detailed, graphical explanation of the MaGellin work flow, please download the MaGellin Workflow Specifications Sheet, which includes all of the steps in the MaGellin workflow.


Constructing a Toolbox

Our goal was to create a toolbox for developing customized site-specific methylases. Like any good toolbox, it includes three components: the tool, the assay, and the automation.
  1. The Tool: a fusion between a DNA binding domain and a methylase enzyme
  2. The Assay: a digestion based assay, called MaGellin, to measure both methylase activity and sequence specificity
  3. The Automation: a unique software package that predicts experimental outcomes and analyzes gel electrophoresis images to measure methylase functionality


Toolbox
Toolbox with the three essential components.



Our toolbox satisfies 6 requirements:
  1. Robust – includes functional fusion proteins for comparison
  2. Standardized – all inclusive in one-plasmid with simple multiple cloning sites, standard bisulfite sequencing primers, and a digestion based methylation assay built in
  3. Easy to Use – we programmed a software package to predict experimental outcomes and automate gel electrophoresis analysis
  4. Inexpensive – methylase activity and specificity can be screened by simply digesting and running a gel
  5. Noiseless – the bacterial chassis has no background CpG methylation
  6. Open Source – we BioBrick’ed the full plasmid and the methylases


←Previous Next→