Safety

Ethylene pathway selection

When we decided to engineer a biological system able to produce ethylene, we looked at all the already characterized pathways. At first we checked the plants ethylene producing pathway, because we wanted to work on fruit ripening and we knew that ethylene is a plant hormone able to accelerate this process.

But then we stumbled upon a problem in this pathway: it produces hydrogen cyanide as byproduct, an highly toxic gas that inhibits the cytochrome C oxydase enzyme. It can kill a human within 10 minutes even at very low concentration (around 300 ppm). Plants however have a detox mechanism that gets rid of this hazardous product. That's why we do not die when we eat fruit!

Fruit render hydrogen cyanide harmless thanks to the β-cyanoalanine synthase enzyme, which catalyzes the synthesis of β-cyanoalanine from cystein and hydrogen cyanide. The issue is that this reaction produces also hydrogen sulfide, which is toxic and inflammable. We weren't able to find a biological way to remove this compound (we did not find any yet characterized thiol S-methyltransferase), so we tried to look further into alternative pathways.

Anyway, the plant pathway would have been a convenient way to produce ethylene. It already contains SAM synthetase, that our team exploit also for methyl salycilate production.

We found three alternative pathways: one very complicated and involving superoxide species, and the remaining two exploiting the same enzyme derived from Pseudomonas syringae. Ps is a plant pathogen bacteria able to produce ethylene through a reaction catalyzed by the 2-Oxoglutarate Oxygenase/Decarboxylase enzyme. It takes 2-Oxoglutarate as substrate and transforms it into ethylene, water and carbon dioxyde (Goto M. Plant and Cell Physiology (2012) 26, 141-150).

A solution to avoid unsafe storage of ethylene cylinders

Ethylene is the simplest unsatured hydrocarbon. Like all hydrocarbons, it is asphyxiating and flammable. In the ripen facility it is stored in high pressure cylinders that can be very dangerous.

Using our system can avoid this issue. In fact, our transformed strain cannot produce ethylene in a concentration high enough to be explosive (from 2.7% to 34% v,v is needed). With an air/culture volume ratio equal to 4 we detected and quantified around 200 ppm of ethylene.

Precautions taken

We always worked with our producing ethylene bacteria under the hood. When samles were induced, cultures were mainteined in special hermetially closed vials with a rubber cap that allowed the connection to the micro gas chromatograph. Also for MeSa we worked in safe conditions as it can be nocive and irritating. We carefully checked the MSDS both for ethylene and MeSa.

Safety Form

We used some strains of E. coli (NEB 10beta, NEB5 alpha, BL21, TOP10, TB1, JM29) and one strain of B. subtilis (168). All these strains belong to risk group 1. In our project we used only one biobrick coming from organisms of the second risk group:

• BBa_J45319: catalyses the production of salycilate from chorismate and comes from Pseudomonas aeruginosa;

If released accidentally, our engeneered microorganisms wouldn't pose any risk to the public. The amount of ethylene or MeSa produced in the open air would be too low to be dangerous to people. The same goes for the environmental risk: in fact both the compounds are produced naturally by plants. However some risk could occur in an eventual scale up of our system: however our vending machine will not contain sufficient ethylene to be of risk. Besides, most of our parts are under control of inducible promoters, furthermore the strain of B. subtilis that we used is auxotrophic for thriptofane (and also threonine if transformed).

If you are interested in more informations and details please check our Safety form