User:ChristopherW

From 2013.igem.org

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<html>
<html>
<head>
<head>
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<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
 
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<script type="text/javascript" src="AnnotatorCode.js"></script>
 
<script type="text/javascript" src="http://code.jquery.com/jquery-1.10.0.min.js"></script>
<script type="text/javascript" src="http://code.jquery.com/jquery-1.10.0.min.js"></script>
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<script type="text/javascript" src="http://api.jquery.com/resources/events.js"></script>
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<script type="text/javascript" src="https://2013.igem.org/Team:TU-Munich/AjaxExtension.js?action=raw&ctype=text/js"></script>
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<script type="text/javascript" src="https://2013.igem.org/Team:TU-Munich/md5_pajhome.js?action=raw&ctype=text/js"></script>
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<script type="text/javascript" src="https://2013.igem.org/Team:TU-Munich/Flot.js?action=raw&ctype=text/js"></script>
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<!-- IMPORTANT: DON'T REMOVE THIS LINE, OTHERWISE NOT SUPPORTED FOR IE BEFORE 9 -->
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<!--[if lte IE 8]><script language="javascript" type="text/javascript" src="excanvas.min.js"></script><![endif]-->
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<script type="text/javascript" src="https://2013.igem.org/Team:TU-Munich/AnnotatorCode2.js?action=raw&ctype=text/js"></script>
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<title>AutoAnnotator by Team TU-Munich 2013</title>
<title>AutoAnnotator by Team TU-Munich 2013</title>
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</head>
</head>
<body>
<body>
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<p id="Command">Enter the nucleotide sequence below!</p>
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<p id="Command">Enter a BioBrick number below, either starting with "BBa_" or just the alphanumeric code! <br>
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Alternatively (e.g. for new BioBricks, which aren't in the Registry yet) you can enter the nucleotide sequence directly.
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</p>
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<input type="text" id="EnteredSequence"> Enter sequence!
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<form>
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<input type="text" id="EnteredBioBrick"> Enter BioBrick number or DNA sequence!
<br>
<br>
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<input type="button" onclick="main_table_calc()" value="Click here to create table">
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<input type="button" id="CreateTableButton" onclick="get_sequence()" value="Click here to create table">
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</form>
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<p id="CountingResult"></p>
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<p id="htmlExplanation"></p>
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<p id="newoutput"></p>
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<p id="htmlTable"></p>
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</body>
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<p id="wikiExplanation"></p>
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</html>
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<textarea readonly id="wikiTable" style="width:100%; display: none;" rows="4"></textarea>
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<script>
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=Sample Output=
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//for enter to trigger program when cursor in the textfield
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$('#EnteredBioBrick').keyup(function(event) {
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{|cellspacing="0" border="1"
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if (event.which == 13){
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|colspan="20"|'''Automatically determined parameters using the [http://www.mediawiki.org/wiki/Table BioBrick-AutoAnnotator]'''
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$('#EnteredBioBrick').blur(); //to loose focus
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|-
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$('#CreateTableButton').click();
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|colspan="10"|BioBrick: BBa_K1159000
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}
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|colspan="10"|Used open reading frame from position ?x? to ?y?.
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})
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|-
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$('#EnteredBioBrick').keydown(function(event) {
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|colspan="2"|A (Ala)
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if (event.which == 13) {
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|colspan="2"|1 (5.00%)
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  event.preventDefault();
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|colspan="2"|R (Arg)
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}
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|colspan="2"|1 (5.00%)
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});
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|colspan="2"|N (Asn)
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</script>
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|colspan="2"|1 (5.00%)
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|colspan="2"|D (Asp)
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</body>
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|colspan="2"|2 (10.00%)
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</html>
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|colspan="2"|C (Cys)
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|colspan="2"|1 (5.00%)
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|-
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|colspan="2"|Q (Gln)
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|colspan="2"|1 (5.00%)
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|colspan="2"|E (Glu)
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|colspan="2"|2 (10.00%)
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|colspan="2"|G (Gly)
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|colspan="2"|1 (5.00%)
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|colspan="2"|H (His)
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|colspan="2"|1 (5.00%)
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|colspan="2"|I (Ile)
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|colspan="2"|0 (0.00%)
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|-
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|colspan="2"|L (Leu)
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|colspan="2"|0 (0.00%)
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|colspan="2"|K (Lys):
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|colspan="2"|1 (5.00%)
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|colspan="2"|M (Met)
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|colspan="2"|1 (5.00%)
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|colspan="2"|F (Phe)
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|colspan="2"|2 (10.00%)
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|colspan="2"|P (Pro)
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|colspan="2"|1 (5.00%)
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|-
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|colspan="2"|S (Ser)
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|colspan="2"|1 (5.00%)
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|colspan="2"|T (Thr)
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|colspan="2"|0 (0.00%)
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|colspan="2"|W (Trp)
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|colspan="2"|1 (5.00%)
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|colspan="2"|Y (Tyr)
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|colspan="2"|1 (5.00%)
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|colspan="2"|V (Val)
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|colspan="2"|1 (5.00%)
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|-
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|colspan="2"|'''Amino acid counting:'''
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|colspan="4"|Total number of amino acids (aa):
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|colspan="2"|20
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|colspan="4"|Number of positively charged aa (Arg + Lys):
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|colspan="2"|2
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|colspan="4"|Number of negatively charged aa (Asp + Glu):
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|colspan="2"|4
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|-
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|colspan="2"|'''Biochemical parameters:'''
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|colspan="4"|Molecular weight [Da]:
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|colspan="2"|2459.69
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|colspan="4"|Theoretical pI:
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|colspan="2"|4.75
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|colspan="4"|Extinction coefficient:
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|colspan="2"|7052.5 (all Cys as cystine), 6990 (no Cys as cystine)
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|-
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|colspan="2"|'''Estimated half-life:'''
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|colspan="4"|Mammals:
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|colspan="2"|4.4 hour
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|colspan="4"|Yeast:
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|colspan="2"|>20 hour
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|colspan="4"|''E. coli'':
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|colspan="2"|>10 hour
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|-
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|colspan="2"|'''Codon usage:'''
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|colspan="4"|Mammals:
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|colspan="2"|?good?
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|colspan="4"|Yeast:
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|colspan="2"|?Ok?
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|colspan="4"|''E. coli'':
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|colspan="2"|?bad ?
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|-
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|colspan="3"|'''RFC standard:'''
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|colspan="17"|This is a RFC 25 BioBrick, thus ATGGCCGGC and ACCGGT were added to the 5' and 3' ends.
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|-
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|colspan="20"| The BioBrick-AutoAnnotator was created by [https://2013.igem.org/Team:TU-Munich TU-Munich 2013] iGEM team. For information please read the [https://2013.igem.org/Team:TU-Munich/Results/Software description].
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|}
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Latest revision as of 21:26, 14 September 2013

AutoAnnotator by Team TU-Munich 2013

Enter a BioBrick number below, either starting with "BBa_" or just the alphanumeric code!
Alternatively (e.g. for new BioBricks, which aren't in the Registry yet) you can enter the nucleotide sequence directly.

Enter BioBrick number or DNA sequence!

Retrieved from "http://2013.igem.org/User:ChristopherW"