Template:Kyoto/Notebook/Aug 24

From 2013.igem.org

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(→Ethanol Precipitation)
(→Electrophoresis)
 
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!Name||concentration[µg/mL]||260/280||260/230
!Name||concentration[µg/mL]||260/280||260/230
|-
|-
-
|8/22 aptamer 12_P EcoRI & SpeI||88||21.3||--
+
|8/22 aptamer 12_P (EcoRI & SpeI)||88||21.3||--
|-
|-
-
|8/22 aptamer 12_1R EcoRI & SpeI||63||23.1||--
+
|8/22 aptamer 12_1R (EcoRI & SpeI)||63||23.1||--
|-
|-
-
|8/22 aptamer 12_1M EcoRI & SpeI||40||22.0||--
+
|8/22 aptamer 12_1M (EcoRI & SpeI)||40||22.0||--
|-
|-
-
|8/23 Fusion6 antisense EcoRI & SpeI||6.0||1.60||0.17
+
|8/23 Fusion6 antisense (EcoRI & SpeI)||6.0||1.60||0.17
|-
|-
-
|8/23 Fusion6 antisense XbaI & PstI||6.0||1.71||0.25
+
|8/23 Fusion6 antisense (XbaI & PstI)||6.0||1.71||0.25
|-
|-
-
|8/23 pT181 antisense EcoRI & SpeI||6.0||2.22||0.15
+
|8/23 pT181 antisense (EcoRI & SpeI)||6.0||2.22||0.15
|-
|-
-
|8/23 pT181 antisense XbaI & PstI||6.0||2.10||0.04
+
|8/23 pT181 antisense (XbaI & PstI)||6.0||2.10||0.04
|-
|-
-
|8/22 Plac SpeI & PstI||6.0||1.47||0.09
+
|8/22 Plac (SpeI & PstI)||6.0||1.47||0.09
|-
|-
-
|8/22 Fusion1 antisense EcoRI & SpeI||10||2.16||0.01
+
|8/22 Fusion1 antisense (EcoRI & SpeI)||10||2.16||0.01
|-
|-
-
|8/22 J23100 SpeI & PstI||6.0||1.52||0.35
+
|8/22 J23100 (SpeI & PstI)||6.0||1.52||0.35
|}
|}
{| class="wikitable"
{| class="wikitable"
!Name||concentration[µg/mL]||260/280||260/230
!Name||concentration[µg/mL]||260/280||260/230
 +
|-
 +
|8/22 Spinach (EcoRI & SpeI)||8.0||1.15||0.77
 +
|-
 +
|8/22 Fusion6 antisense (XbaI & PstI)||44||1.07||0.96
 +
|-
 +
|8/22 Fusion1 antisense (XbaI & PstI)||2||--||1.00
 +
|-
 +
|8/22 pT181 antisense (XbaI & PstI)||3.||2.01||0.40
 +
|-
 +
|8/22 pT181 antisense (EcoRI & SpeI)||8||1.13||0.82
 +
|-
 +
|8/22 Fusion3m2 attenuator (XbaI & PstI)||5||2.27||1.50
 +
|-
 +
|8/22 Fusion3m2 attenuator (EcoRI & SpeI)||34||1.16||1.02
 +
|-
 +
|8/22 Fusion1 attenuator (XbaI & PstI)||14||1.40||0.62
 +
|-
 +
|8/22 Fusion1 attenuator (EcoRI & SpeI)||16||1.27||0.61
 +
|-
 +
|8/22 pT181 attenuator (XbaI & PstI)||5||--||0.88
|}
|}
 +
*These samples were performed ethanol ethanl precipitation.
</div>
</div>
===Restriction Enzyme Digestion===
===Restriction Enzyme Digestion===
 +
<div class="experiment">
 +
<span class="author">No name</span>
 +
{| class="wikitable"
 +
! ||tetR aptamer 12_P(2)||EcoRI||SpeI||10x Buffer B||100x BSA||MilliQ||total
 +
|-
 +
|2 cuts||2.7&micro;L||0.5&micro;L||0.5&micro;L||3&micro;L||0.3&micro;L||23&micro;L||30&micro;L
 +
|-
 +
|NC||0.3&micro;L||0&micro;L||0&micro;L||1&micro;L||0.1&micro;L||8.6&micro;L||10&micro;L
 +
|}
 +
{| class="wikitable"
 +
! ||tetR aptamer 12_1R(2)||EcoRI||SpeI||10x Buffer B||100x BSA||MilliQ||total
 +
|-
 +
|2 cuts||2.6&micro;L||0.5&micro;L||0.5&micro;L||3&micro;L||0.3&micro;L||23.1&micro;L||30&micro;L
 +
|-
 +
|NC||0.3&micro;L||0&micro;L||0&micro;L||1&micro;L||0.1&micro;L||8.6&micro;L||10&micro;L
 +
|}
 +
{| class="wikitable"
 +
! ||tetR aptamer 12_M(1)||EcoRI||SpeI||10x Buffer B||100x BSA||MilliQ||total
 +
|-
 +
|2 cuts||2.7&micro;L||0.5&micro;L||0.5&micro;L||3&micro;L||0.3&micro;L||23&micro;L||30&micro;L
 +
|-
 +
|NC||0.3&micro;L||0&micro;L||0&micro;L||1&micro;L||0.1&micro;L||8.6&micro;L||10&micro;L
 +
|}
 +
</div>
 +
===Master Plate===
===Master Plate===
 +
<div class="experiment">
 +
<span class="author">No name</span>
 +
{| class="wikitable"
 +
!Number||Use LB plate(+Kan)
 +
|-
 +
|1||entA- #1
 +
|-
 +
|2||entA- #1
 +
|-
 +
|3||entA- #1
 +
|-
 +
|4||entA- #2
 +
|-
 +
|5||entA- #2
 +
|-
 +
|6||entA- #2
 +
|}
 +
</div>
 +
===Electrophoresis===
===Electrophoresis===
 +
<div class="experiment">
 +
<span class="author">No name</span>
 +
{| class="wikitable"
 +
!Lane||Sample||Enzyme1||Enzyme2
 +
|-
 +
|1||100bp ladder||-||-
 +
|-
 +
|2||tetR aptamer 12_P||EcoRI||SpeI
 +
|-
 +
|3||tetR aptamer 12_P||-||-
 +
|-
 +
|4||tetR aptamer 12_1R||EcoRI||SpeI
 +
|-
 +
|5||tetR aptamer 12_1R||-||-
 +
|-
 +
|6||tetR aptamer 12_1M||EcoRI||SpeI
 +
|-
 +
|7||tetR aptamer 12_1M||-||-
 +
|-
 +
|8||100bp ladder||-||-
 +
|}<br>
 +
[[File:Igku Aug24 Electrophoresis(N1)-pic.jpg]]<br>
 +
<br>
 +
 +
{| class="wikitable"
 +
!Lane||Sample||Enzyme1||Enzyme2
 +
|-
 +
|1||100bp ladder||-||-
 +
|-
 +
|2||tetR aptamer 12_P||EcoRI||SpeI
 +
|-
 +
|3||tetR aptamer 12_1R||EcoRI||SpeI
 +
|-
 +
|4||tetR aptamer 12_1M||EcoRI||SpeI
 +
|-
 +
|5||100bp ladder||-||-
 +
|}
 +
<br>
 +
[[File:Igku Aug24 Electrophoresis(N2)-pic2.jpg]]<br>
 +
 +
<br>
 +
</div>

Latest revision as of 16:18, 25 September 2013

Contents

Aug 24

Gel Extraction

Ashida

Nameconcentration[µg/mL]260/280260/230
8/22 aptamer 12_P (EcoRI & SpeI)8821.3--
8/22 aptamer 12_1R (EcoRI & SpeI)6323.1--
8/22 aptamer 12_1M (EcoRI & SpeI)4022.0--
8/23 Fusion6 antisense (EcoRI & SpeI)6.01.600.17
8/23 Fusion6 antisense (XbaI & PstI)6.01.710.25
8/23 pT181 antisense (EcoRI & SpeI)6.02.220.15
8/23 pT181 antisense (XbaI & PstI)6.02.100.04
8/22 Plac (SpeI & PstI)6.01.470.09
8/22 Fusion1 antisense (EcoRI & SpeI)102.160.01
8/22 J23100 (SpeI & PstI)6.01.520.35
Nameconcentration[µg/mL]260/280260/230
8/22 Spinach (EcoRI & SpeI)8.01.150.77
8/22 Fusion6 antisense (XbaI & PstI)441.070.96
8/22 Fusion1 antisense (XbaI & PstI)2--1.00
8/22 pT181 antisense (XbaI & PstI)3.2.010.40
8/22 pT181 antisense (EcoRI & SpeI)81.130.82
8/22 Fusion3m2 attenuator (XbaI & PstI)52.271.50
8/22 Fusion3m2 attenuator (EcoRI & SpeI)341.161.02
8/22 Fusion1 attenuator (XbaI & PstI)141.400.62
8/22 Fusion1 attenuator (EcoRI & SpeI)161.270.61
8/22 pT181 attenuator (XbaI & PstI)5--0.88
  • These samples were performed ethanol ethanl precipitation.

Restriction Enzyme Digestion

No name

tetR aptamer 12_P(2)EcoRISpeI10x Buffer B100x BSAMilliQtotal
2 cuts2.7µL0.5µL0.5µL3µL0.3µL23µL30µL
NC0.3µL0µL0µL1µL0.1µL8.6µL10µL
tetR aptamer 12_1R(2)EcoRISpeI10x Buffer B100x BSAMilliQtotal
2 cuts2.6µL0.5µL0.5µL3µL0.3µL23.1µL30µL
NC0.3µL0µL0µL1µL0.1µL8.6µL10µL
tetR aptamer 12_M(1)EcoRISpeI10x Buffer B100x BSAMilliQtotal
2 cuts2.7µL0.5µL0.5µL3µL0.3µL23µL30µL
NC0.3µL0µL0µL1µL0.1µL8.6µL10µL

Master Plate

No name

NumberUse LB plate(+Kan)
1entA- #1
2entA- #1
3entA- #1
4entA- #2
5entA- #2
6entA- #2

Electrophoresis

No name

LaneSampleEnzyme1Enzyme2
1100bp ladder--
2tetR aptamer 12_PEcoRISpeI
3tetR aptamer 12_P--
4tetR aptamer 12_1REcoRISpeI
5tetR aptamer 12_1R--
6tetR aptamer 12_1MEcoRISpeI
7tetR aptamer 12_1M--
8100bp ladder--

Igku Aug24 Electrophoresis(N1)-pic.jpg

LaneSampleEnzyme1Enzyme2
1100bp ladder--
2tetR aptamer 12_PEcoRISpeI
3tetR aptamer 12_1REcoRISpeI
4tetR aptamer 12_1MEcoRISpeI
5100bp ladder--


Igku Aug24 Electrophoresis(N2)-pic2.jpg


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