From 2013.igem.org
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| | !Lane||Sample | | !Lane||Sample |
Revision as of 16:29, 26 September 2013
Sep 3
Electrophoresis
Kojima
| Lane | Sample
|
| 1 | 100bp ladder
|
| 2 | pT181 attenuator(2)-DT2(738)
|
| 3 | Ptet-RBS-lacZα-DT-2(756)
|
| 4 | Ptet-RBS-lacZα-DT-3
|
| 5 | Ptet-RBS-lacZα-DT-4
|
| 6 | Ptet-RBS-lacZα-DT-5
|
| 7 | Ptet-RBS-lacZα-DT-6
|
| 8 | RBS-lysis2-DT-2(985)
|
| 9 | RBS-lysis2-DT-3
|
| 10 | 100bp ladder
|
Miniprep
Tatsui
| DNA | concentration[µg/mL] | 260/280 | 260/230
|
| 9/2 14:00 pT181 attenuator | 418.4 | 1.82 | 1.80
|
| 9/2 14:00 pT181 antisense | 362.2 | 1.92 | 1.96
|
| 9/2 14:00 Spinach | 438.3 | 1.86 | 1.99
|
| 9/2 14:00 tetR-apt 12_1R | 567.5 | 1.90 | 1.99
|
| 9/2 21:00 pT181 attenuator | 320.9 | 1.90 | 2.15
|
| 9/2 21:00 Spinach | 457.0 | 1.88 | 2.24
|
Liquid Culture
Kojima
| Sample | medium
|
| Spinach-DT(9/2 master plate) | plusgrow(CP)4ml
|
Restriction Enzyme Digestion
Kojima
| | DNA | EcoR1 | Spe1 | XbaI | Pst1 | 10xBuffer B(EcoR1&Spe1) | 10xBuffer D(Xba1&Pst1) | 100xBSA | MilliQ | total
|
| 9/3 pT181attenuator 14:00 418.4ng/µL | 4.8µL | 1.0µL | 1.0µL | 0µL | 0µL | 3µL | 0µL | 0.3µL | 19.9µL | 30µL
|
| 9/3 pT181attenuator 14:00 418.4ng/µL | 0.2µL | 0µL | 0µL | 0µL | 0µL | 1µL | 0µL | 0.1µL | 8.7µL | 10µL
|
| 9/3 pT181attenuator 14:00 418.4ng/µL | 4.8µL | 0µL | 0µL | 1.0µL | 1.0µL | 0µL | 3µL | 0.3µL | 19.9µL | 30µL
|
| 9/3 pT181attenuator 14:00 418.4ng/µL | 0.2µL | 0µL | 0µL | 0µL | 0µL | 0µL | 1µL | 0.1µL | 8.7µL | 10µL
|
| | DNA | EcoR1 | Spe1 | Xba1 | Pst1 | 10xBuffer B(EcoR1&Spe1) | 10xBuffer D(Xba1&Pst1) | 100xBSA | MilliQ | total
|
| 9/3 pT181antisense 14:00 362.2ng/µL | 5.5µL | 1.0µL | 1.0µL | 0µL | 0µL | 3µL | 0µL | 0.3µL | 19.2µL | 30µL
|
| 9/3 pT181attenuator 14:00 418.4ng/µL | 0.3µL | 0µL | 0µL | 0µL | 0µL | 1µL | 0µL | 0.1µL | 8.6µL | 10µL
|
| 9/3 pT181attenuator 14:00 418.4ng/µL | 5.5µL | 0µL | 0µL | 1.0µL | 1.0µL | 0µL | 3µL | 0.3µL | 19.2µL | 30µL
|
| 9/3 pT181attenuator 14:00 418.4ng/µL | 0.3µL | 0µL | 0µL | 0µL | 0µL | 0µL | 1µL | 0.1µL | 8.6µL | 10µL
|
| | DNA | EcoR1 | Spe1 | 10xBuffer B | 100xBSA | MilliQ | total
|
| 9/3 apt 12_1R 14:00 507.5ng/µL | 3.9µL | 1.0µL | 1.0µL | 3µL | 0.3µL | 20.8µL | 30µL
|
| 9/3 apt 12_1R 14:00 507.5ng/µL | 0.2µL | 0µL | 0µL | 1µL | 0.1µL | 8.7µL | 10µL
|
| | DNA | EcoRI | XbaI | 10xBuffer D | 100xBSA | MilliQ | total
|
| 8/29 DT 166.2ng/µL | 12µL | 1.0µL | 1.0µL | 3µL | 0.3µL | 12.7µL | 30µL
|
| 8/29 DT 166.2ng/µL | 0.6µL | 0µL | 0µL | 1µL | 0.1µL | 8.3µL | 10µL
|
| | DNA | EcoRI | SpeI | 10xBuffer B | 100xBSA | MilliQ | total
|
| 8/22 RBS-lysis1(2) 96ng/µL | 21µL | 1.0µL | 1.0µL | 3µL | 0.3µL | 3.7µL | 30µL
|
| 8/22 RBS-lysis1(2) 96ng/µL | 1.0µL | 0µL | 0µL | 1µL | 0.1µL | 7.9µL | 10µL
|
| | DNA | EcoRI | SpeI | 10xBuffer B | 100xBSA | MilliQ | total
|
| 8/30 RBS-lysis2 220ng/µL | 9.1µL | 1.0µL | 1.0µL | 3µL | 0.3µL | 15.6µL | 30µL
|
| 8/30 RBS-lysis2 220ng/µL | 0.5µL | 0µL | 0µL | 1µL | 0.1µL | 8.4µL | 10µL
|
| | DNA | EcoRI | SpeI | 10xBuffer B | 100xBSA | MilliQ | total
|
| 8/20 RBS-lysis3(1) 282ng/µL | 7.1µL | 1.0µL | 1.0µL | 3µL | 0.3µL | 17.6µL | 30µL
|
| 8/20 RBS-lysis3(1) 282ng/µL | 0.4µL | 0µL | 0µL | 1µL | 0.1µL | 8.5µL | 10µL
|
PCR
Hirano
| Plac(1) plasmid 153.7ng/µL | 10x buffer KOD plus-ver.2 | 2mM dNTPs | 25mM MgSO4 | primer (KaiA_BsaI_Mut_fwd) | primer (KaiA_BsaI_Mut_rer) | KOD plus-ver.2 | MilliQ | total
|
| 0.13 | 2.5 | 2.5 | 1.5 | 0.75 | 0.75 | 0.5 | 16.37 | 25
|
| KaiB (plasmid) 20.2ng/µL | 10x buffer KOD plus-ver.2 | 2mM dNTPs | 25mM MgSO4 | primer (GG2_RBS_KaiB_fwd) | primer (KaiB_GG3_rer) | KOD plus-ver.2 | MilliQ | total
|
| 1 | 2.5 | 2.5 | 1.5 | 0.75 | 0.75 | 0.5 | 15.5 | 25
|
| KaiC (plasmid) 4.4ng/µL | 10x buffer KOD plus-ver.2 | 2mM dNTPs | 25mM MgSO4 | primer | primer | KOD plus-ver.2 | MilliQ | total
|
| 1 | 2.5 | 2.5 | 1.5 | 0.75 | 0.75 | 0.5 | 15.5 | 25
|
| DT-1 (plasmid) 153.7ng/µL | 10x buffer KOD plus-ver.2 | 2mM dNTPs | 25mM MgSO4 | primer | primer | KOD plus-ver.2 | MilliQ | total
|
| 0.1 | 2.5 | 2.5 | 1.5 | 0.75 | 0.75 | 0.5 | 16.4 | 25
|
| PKaiBC(PCR product) 16.3ng/µL | 10x buffer KOD plus-ver.2 | 2mM dNTPs | 25mM MgSO4 | primer | primer | KOD plus-ver.2 | MilliQ | total
|
| 0.7 | 2.5 | 2.5 | 1.5 | 0.75 | 0.75 | 0.5 | 15.8 | 25
|
| SasA(PCR product) 21.6ng/µL | 10x buffer KOD plus-ver.2 | 2mM dNTPs | 25mM MgSO4 | primer | primer | KOD plus-ver.2 | MilliQ | total
|
| 0.5 | 2.5 | 2.5 | 1.5 | 0.75 | 0.75 | 0.5 | 16 | 25
|
| RpaA(PCR product) 15.4ng/µL | 10x buffer KOD plus-ver.2 | 2mM dNTPs | 25mM MgSO4 | primer | primer | KOD plus-ver.2 | MilliQ | total
|
| 0.6 | 2.5 | 2.5 | 1.5 | 0.75 | 0.75 | 0.5 | 15.9 | 25
|
| RpaB(PCR product) 26.7ng/µL | 10x buffer KOD plus-ver.2 | 2mM dNTPs | 25mM MgSO4 | primer | primer | KOD plus-ver.2 | MilliQ | total
|
| 0.4 | 2.5 | 2.5 | 1.5 | 0.75 | 0.75 | 0.5 | 16.1 | 25
|
| PreDenature | Denature | Annealing | Extension | cycle
|
| 94°C | 98°C | | 68°C | --
|
| 5min | 10sec | 30sec | | 30
|
| PreDenature | Denature | Annealing | Extension | cycle
|
| 94°C | 98°C | | 68°C | --
|
| 5min | 10sec | 30sec | | 30
|
Mutatation PCR
No name
| KaiABC(12.6pg/µL) | Primer(Kai_BsaIMut_fwd) | Primer(Kai_BsaIMut_rer) | Prime STAR Max Premix | MilliQ | total
|
| 1 | 1 | 1 | 25 | 22 | 50
|
| Primer(Kai_BsaIMut_fwd) | Primer(Kai_BsaIMut_rer) | Prime STAR Max Premix | MilliQ | total
|
| | 1 | 1 | 25 | 23 | 50
|
| PreDenature | Denature | Annealing | Extension | cycle
|
| 94°C | 98°C | 65°C | 72°C | --
|
| 5min | 10sec | 15sec | 40sec | 30
|
Colony PCR
| Sample | base pair
|
| 9/1 pT181antisense(pSB1C3) | 400bp
|
| 9/1 pT181antisense-DT | 547bp
|
| PreDenature | Denature | Annealing | Extension | cycle
|
| 94°C | 94°C | 55°C | 68°C | --
|
| 5m | 30s | 30s | 30s | 30
|
Electrophoresis
Kojima
| Lane | Sample
|
| 1 | 100bp ladder
|
| 2 | 9/1 pT181antisense(pSB1C3)
|
| 3 | 9/1 pT181antisense
|
Electrophoresis
| Lane | Sample
|
| 1 | 100bp ladder
|
| 2 | attenuator EcoR1&Spe1
|
| 3 | attenuator negative EcoR1&Spe1
|
| 4 | attenuator Xba1&Pst1
|
| 5 | attenuator negative Xba1&Pst1
|
| 6 | antisense EcoR1&Spe1
|
| 7 | antisense negative EcoR1&Spe1
|
| 8 | 100bp ladder
|
| Lane | Sample
|
| 1 | 100bp ladder
|
| 2 | antisense Xba1&Pst1
|
| 3 | antisense negative Xba1&Pst1
|
| 4 | apt EcoR1&Spe1
|
| 5 | apt negative EcoR1&Spe1
|
| 6 | DT EcoR1&Xba1
|
| 7 | DT negative EcoR1&Xba1
|
| 8 | 100bp ladder
|
| Lane | Sample
|
| 1 | 100bp ladder
|
| 2 | RBS-lysis1 EcoR1&Spe1
|
| 3 | RBS-lysis1 negative
|
| 4 | RBS-lysis2 EcoR1&Spe1
|
| 5 | RBS-lysis2 negative
|
| 6 | RBS-lysis3 EcoR1&Spe1
|
| 7 | RBS-lysis3 negative
|
| 8 | 100bp ladder
|
| Lane | DNA | Enzyme
|
| 1 | 100bp ladder |
|
| 3 | pT181 attenuator | EcoRI&SpeI
|
| 4 | pT181 attenuator | EcoRI&SpeI
|
| 6 | pT181 attenuator | XbaI&PstI
|
| 7 | pT181 attenuator | XbaI&PstI
|
| 9 | pT181 antisense | EcoRI&SpeI
|
| 10 | pT181 antisense | EcoRI&SpeI
|
| Lane | DNA | Enzyme
|
| 1 | 100bp ladder |
|
| 2 | pT181 antisense | XbaI&PstI
|
| 3 | pT181 antisense | XbaI&PstI
|
| 5 | apt12_1R | EcoRI&SpeI
|
| 6 | apt12_1R | EcoRI&SpeI
|
| Lane | DNA | Enzyme
|
| 1 | 100bp ladder |
|
| 2 | DT | EcoRI&XbaI
|
| 3 | DT | EcoRI&XbaI
|
| 5 | EcoRI&SpeI
|
| 6 | RBS-lysis1 | EcoRI&SpeI
|
| Lane | DNA | Enzyme
|
| 1 | 100bp ladder |
|
| 2 | RBS-lysis2 | EcoRI&SpeI
|
| 3 | RBS-lysis2 | EcoRI&SpeI
|
| 5 | RBS-lysis3 | EcoRI&SpeI
|
| 6 | RBS-lysis3 | EcoRI&SpeI
|
| Name | concentration[µg/mL] | 260/280 | 260/230
|
| pT181 attenuator(EcoRI&SpeI) | 10.0 | 1.86 | 0.39
|
| pT181 attenuator(XbaI&PstI) | 11.7 | 1.65 | 0.36
|
| pT181 antisense(EcoRI&SpeI) | 4.2 | 1.95 | 0.25
|
| pT181 antisense(XbaI&PstI) | 6.6 | 1.78 | 0.33
|
| tRNA 12_1R apt(EcoRI&SpeI) | 5.7 | 1.73 | 0.29
|
| DT(EcoRI&XbaI) | 16.6 | 1.99 | 0.76
|
| RBS-lysis1(EcoRI&SpeI) | 8.8 | 1.65 | 0.32
|
| RBS-lysis2(EcoRI&SpeI) | 13.4 | 1.61 | 0.48
|
| RBS-lysis3(EcoRI&SpeI) | 10.2 | 2.19 | 0.51
|
Liquid Culture
No name
| Sample | medium
|
| 8/16master plate7(DT) |
|
| 8/21RBS-lysis1 |
|
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