Team:Groningen/protocols/biofilm media
From 2013.igem.org
(Difference between revisions)
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<br>The strains were grown overnight at 37°C on LB broth. | <br>The strains were grown overnight at 37°C on LB broth. | ||
- | <br>Next, | + | <br>Next, 1 ml of liquid culture was used to inoculate every 10 ml MSgg medium. this in turn was incubated at 27°C for 5 days. |
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<h2>Media for macrocolony formation</h2> | <h2>Media for macrocolony formation</h2> | ||
- | <br><H5>2x SG medium ( | + | <br><H5>2x SG medium (100 mL)</H5> |
<table id="normal"> | <table id="normal"> | ||
<tr> | <tr> | ||
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<tr> | <tr> | ||
<td>Nutrient broth (Difco)</td> | <td>Nutrient broth (Difco)</td> | ||
- | <td ALIGN=CENTER>1. | + | <td ALIGN=CENTER>1.6 g</td> |
<td></td> | <td></td> | ||
</tr> | </tr> | ||
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<tr> | <tr> | ||
<td>KCl</td> | <td>KCl</td> | ||
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.2 g</td> |
<td></td> | <td></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>MgSO<sub>4</sub>7H<sub>2</sub>O </td> | + | <td>MgSO<sub>4</sub>.7H<sub>2</sub>O </td> |
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.05 g</td> |
<td></td> | <td></td> | ||
</tr> | </tr> | ||
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<tr> | <tr> | ||
<td>agar</td> | <td>agar</td> | ||
- | <td ALIGN=CENTER>1. | + | <td ALIGN=CENTER>1.5 g</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
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<td></td> | <td></td> | ||
<td ALIGN=CENTER></td> | <td ALIGN=CENTER></td> | ||
- | <td> add | + | <td> add everything together and autoclave</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>Ca(NO<sub>3</sub>)<sub>2</sub>4H<sub>2</sub>O | + | <td>Ca(NO<sub>3</sub>)<sub>2</sub>.4H<sub>2</sub>O 1 mM</td> |
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.1 mL</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>MnCl<sub>2</sub>4H<sub>2</sub>O | + | <td>MnCl<sub>2</sub>.4H<sub>2</sub>O 0.1 mM</td> |
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.1 mL</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>FeSO<sub>4</sub> 1 | + | <td>FeSO<sub>4</sub> 1 µM</td> |
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.1 mL</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
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<tr> | <tr> | ||
<td>0.1% glucose </td> | <td>0.1% glucose </td> | ||
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.5 mL</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
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- | <br><H5>LB/Mn/glucose medium ( | + | <br><H5>LB/Mn/glucose medium (100 mL)</H5> |
<table id="normal"> | <table id="normal"> | ||
<tr> | <tr> | ||
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<tr> | <tr> | ||
<td>LB/ 1.5% agar</td> | <td>LB/ 1.5% agar</td> | ||
- | <td ALIGN=CENTER> | + | <td ALIGN=CENTER>100 ml</td> |
<td>autoclave</td> | <td>autoclave</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>MnCl<sub>2</sub>4H<sub>2</sub>O 0. | + | <td>MnCl<sub>2</sub>.4H<sub>2</sub>O 0.1 mM</td> |
<td ALIGN=CENTER>0.1mL</td> | <td ALIGN=CENTER>0.1mL</td> | ||
<td> </td> | <td> </td> | ||
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<tr> | <tr> | ||
<td>0.1% glucose </td> | <td>0.1% glucose </td> | ||
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.5 mL</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
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- | <br><H5> MSgg medium ( | + | <br><H5> MSgg medium (100 mL)</H5> |
<table id="normal"> | <table id="normal"> | ||
<tr> | <tr> | ||
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<tr> | <tr> | ||
<td>KH<sub>2</sub>PO<sub>4</sub></td> | <td>KH<sub>2</sub>PO<sub>4</sub></td> | ||
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.026 g</td> |
<td></td> | <td></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>K<sub>2</sub>HPO<sub>4</sub></td> | <td>K<sub>2</sub>HPO<sub>4</sub></td> | ||
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.061 g</td> |
<td></td> | <td></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>MOPS | + | <td>MOPS 100 mM</td> |
- | <td ALIGN=CENTER>2. | + | <td ALIGN=CENTER>2.09 g</td> |
<td></td> | <td></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>MgCl<sub>2</sub>6H<sub>2</sub>O | + | <td>MgCl<sub>2</sub>.6H<sub>2</sub>O 2 mM</td> |
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.04 g</td> |
<td></td> | <td></td> | ||
</tr> | </tr> | ||
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<tr> | <tr> | ||
<td>agar</td> | <td>agar</td> | ||
- | <td ALIGN=CENTER>1. | + | <td ALIGN=CENTER>1.5 g</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
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<td></td> | <td></td> | ||
<td ALIGN=CENTER></td> | <td ALIGN=CENTER></td> | ||
- | <td> add | + | <td>add everything together and autoclave</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>CaCl<sub>2</sub> | + | <td>CaCl<sub>2</sub> 700 mM</td> |
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.1 mL</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>MnCl<sub>2</sub> | + | <td>MnCl<sub>2</sub> 50 µM</td> |
- | <td ALIGN=CENTER> | + | <td ALIGN=CENTER>50 µL</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>FeCl<sub>3</sub> 50 | + | <td>FeCl<sub>3</sub> 50 µM</td> |
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.1 mL</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>ZnCl<sub>2</sub> 1 | + | <td>ZnCl<sub>2</sub> 1 µM</td> |
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.1 mL</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>thiamine 2 | + | <td>thiamine 2 µM</td> |
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.1 mL</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
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<tr> | <tr> | ||
<td>0.5% glycerol </td> | <td>0.5% glycerol </td> | ||
- | <td ALIGN=CENTER>0. | + | <td ALIGN=CENTER>0.57 mL</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
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<tr> | <tr> | ||
<td>0.5% glutamate </td> | <td>0.5% glutamate </td> | ||
- | <td ALIGN=CENTER> | + | <td ALIGN=CENTER>10 mL</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
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<tr> | <tr> | ||
<td>tryptophan </td> | <td>tryptophan </td> | ||
- | <td ALIGN=CENTER> | + | <td ALIGN=CENTER>1 mL</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
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</p> | </p> | ||
- | <br>Grow cells overnight in LB / glass tubes at | + | <br>Grow cells overnight in LB / glass tubes at 37°C. |
- | <br>Inoculate | + | <br>Inoculate 2 µL spot on plate dry 15 minutes at 30°C |
- | <br>Inoculate | + | <br>Inoculate 30°C 2-4 days |
Revision as of 15:58, 27 September 2013
The strains were grown overnight at 37°C on LB broth.
Next, 1 ml of liquid culture was used to inoculate every 10 ml MSgg medium. this in turn was incubated at 27°C for 5 days.
Media for macrocolony formation
2x SG medium (100 mL)
compound | amount | treatment |
---|---|---|
Nutrient broth (Difco) | 1.6 g | |
KCl | 0.2 g | |
MgSO4.7H2O | 0.05 g | |
agar | 1.5 g | |
add everything together and autoclave | ||
Ca(NO3)2.4H2O 1 mM | 0.1 mL | |
MnCl2.4H2O 0.1 mM | 0.1 mL | |
FeSO4 1 µM | 0.1 mL | |
0.1% glucose | 0.5 mL |
LB/Mn/glucose medium (100 mL)
compound | amount | treatment |
---|---|---|
LB/ 1.5% agar | 100 ml | autoclave |
MnCl2.4H2O 0.1 mM | 0.1mL | |
0.1% glucose | 0.5 mL |
MSgg medium (100 mL)
compound | amount | treatment |
---|---|---|
KH2PO4 | 0.026 g | |
K2HPO4 | 0.061 g | |
MOPS 100 mM | 2.09 g | |
MgCl2.6H2O 2 mM | 0.04 g | |
agar | 1.5 g | |
add everything together and autoclave | ||
CaCl2 700 mM | 0.1 mL | |
MnCl2 50 µM | 50 µL | |
FeCl3 50 µM | 0.1 mL | |
ZnCl2 1 µM | 0.1 mL | |
thiamine 2 µM | 0.1 mL | |
0.5% glycerol | 0.57 mL | |
0.5% glutamate | 10 mL | |
tryptophan | 1 mL |
Grow cells overnight in LB / glass tubes at 37°C.
Inoculate 2 µL spot on plate dry 15 minutes at 30°C
Inoculate 30°C 2-4 days