Team:Biwako Nagahama/Material & Method

From 2013.igem.org

(Difference between revisions)
(→CelC)
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<p>CelC gene had produced clone from Agrobacterium tumefaciens C58, but I confirmed whether it’s true or not. CelC gene has restriction enzyme sites,EcoRI and BamHI. </p>
<p>CelC gene had produced clone from Agrobacterium tumefaciens C58, but I confirmed whether it’s true or not. CelC gene has restriction enzyme sites,EcoRI and BamHI. </p>
[[File:Biwako-Nagahama_T.Ksenpai_celC1.png|500px|]]
[[File:Biwako-Nagahama_T.Ksenpai_celC1.png|500px|]]
 +
<p> Inverse PCR
 +
</p>
 +
<p>※Restriction Enzyme sol.(line No.5 CelC_EcoRI)which has 1M NaCl  dissolved in it, so, the band in lane no.5 appeared as upper-side.
 +
</p>
 +
<p> CelC_Fw:  TGACGAAAGCACTGATCTGC
 +
 +
</p>
 +
<p> CelC_Rv:  GAAAAGATCGAAACGGTGG
 +
</p>
 +
<p> TA cloning of CelC
 +
</p>
 +
<p>16℃ 30min incubate
 +
</p>
 +
<p> Ligation of CelC/pMD20 and Transformation in JM109.
 +
</p>
 +
<p> Cells were stored on ice for 30min.
 +
</p>
 +
<p> After 42℃ 30sec heat shock, cells were stored on ice for 2min.
 +
</p>
 +
<p> Then cells were pre-cultured at 37℃ for 1hr, plated to Ampicillin plate.
 +
</p>
 +
<p>6/1 Liquid clluture
 +
</p>
 +
<p> CelC/pMD20 22 samples at 37°C, for overnight.
 +
</p>
 +
<p>6/2 MiniPrep of CelC
 +
</p>
 +
<p> Linear CelC/pMD20 DNA :2736bp. This CelC/pMD20 sample is cccDNA. So,white 6,white 7,white 8,white 9,white 14 probably picked up CelC/pMD20.
 +
</p>
 +
<p>6/3 Restriction Enzyme of CelC/pMD20
 +
</p>
 +
<p> CelC gene had produced clone from Agrobacterium tumefaciens C58, I confirmed whether it’s true or not. CelC/pMD20 gene has 2 restriction enzyme sites,BamHI
 +
</p>
 +
<p> I confirmed the direction of CelC gene.
 +
</p>
 +
<p>6/ Sequence of CelC/pMD20
 +
 +
</p>
 +
<p>7/18 PointMutation of CelC
 +
</p>
 +
<p> CelC gene had Restriction Enzyme Site,EcoRI. We directed the EcoRI site.
 +
</p>
 +
<p> Front
 +
</p>
 +
<p> Fw1 Primer:
 +
</p>
 +
<p> TATATATTCTAGATGAAGAGCGGGATTTCG
 +
 +
</p>
 +
<p> Rv2 Primer:
 +
</p>
 +
<p> CATTATATCCGAACTCCGGCTG
 +
</p>
 +
<p> Rear
 +
</p>
 +
<p> Fw2 Primer:
 +
</p>
 +
<p> AGCCGGAGTTCGGATATAATGC
 +
</p>
 +
 +
 +
<p> Rv1 Primer:
 +
</p>
 +
<p> CAGCACGAACTAGTATTATTATCATCGGC
== <h2>Crds</h2> ==
== <h2>Crds</h2> ==

Revision as of 18:48, 27 September 2013

Contents

Material & Method

CelC

Agro Notebook

5/31 Cloning of CelC and Restriction Enzyme

By Koki Tsutsumi

CelC gene had produced clone from Agrobacterium tumefaciens C58, but I confirmed whether it’s true or not. CelC gene has restriction enzyme sites,EcoRI and BamHI.

Biwako-Nagahama T.Ksenpai celC1.png

Inverse PCR

※Restriction Enzyme sol.(line No.5 CelC_EcoRI)which has 1M NaCl dissolved in it, so, the band in lane no.5 appeared as upper-side.

CelC_Fw: TGACGAAAGCACTGATCTGC

CelC_Rv: GAAAAGATCGAAACGGTGG

TA cloning of CelC

16℃ 30min incubate

Ligation of CelC/pMD20 and Transformation in JM109.

Cells were stored on ice for 30min.

After 42℃ 30sec heat shock, cells were stored on ice for 2min.

Then cells were pre-cultured at 37℃ for 1hr, plated to Ampicillin plate.

6/1 Liquid clluture

CelC/pMD20 22 samples at 37°C, for overnight.

6/2 MiniPrep of CelC

Linear CelC/pMD20 DNA :2736bp. This CelC/pMD20 sample is cccDNA. So,white 6,white 7,white 8,white 9,white 14 probably picked up CelC/pMD20.

6/3 Restriction Enzyme of CelC/pMD20

CelC gene had produced clone from Agrobacterium tumefaciens C58, I confirmed whether it’s true or not. CelC/pMD20 gene has 2 restriction enzyme sites,BamHI

I confirmed the direction of CelC gene.

6/ Sequence of CelC/pMD20

7/18 PointMutation of CelC

CelC gene had Restriction Enzyme Site,EcoRI. We directed the EcoRI site.

Front

Fw1 Primer:

TATATATTCTAGATGAAGAGCGGGATTTCG

Rv2 Primer:

CATTATATCCGAACTCCGGCTG

Rear

Fw2 Primer:

AGCCGGAGTTCGGATATAATGC


Rv1 Primer:

CAGCACGAACTAGTATTATTATCATCGGC

Crds

 </div>

</div>

</div>

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