Team:Fudan/team profile.html

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<li id='pt-preferences'><a href='https://igem.org/User_Information' title='My account'>My account</a></li>

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<h1 class='firstHeading'>IGEM 2013 Team Information</h1>

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<TR><TD width='150'>Team Name: <TD colspan=9 style='font-size:150%;line-height:150%;font-weight:800;'>Fudan<div style='display:inline;padding-left:40px;font-size:12px;font-weight:normal'>

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<A href='https://2013.igem.org/Team:Fudan'>(Visit their wiki)</a><A href='http://partsregistry.org/cgi/dna_transfer/batch_list.cgi?group_id=1410' style='padding-left:20px;'> (Part Submissions)</a></div><TR><TD>Primary Contact (PI): <TD colspan=9>Xiaoming Ding<TR><TD style='vertical-align:top'>Schools:<TD colspan=9><PRE style='width:90%;background:none;border:none;padding: 0px;'>www.fudan.edu.cn</PRE><TR><TD>Division:<TD style='width: 300px'>iGEM<TD>Application Date:  2013-03-31<TR><TD>Section:<TD style='width: 300px'>Overgraduate<TR><TD>Region:<TD style='width:300px'>Asia<TD>Acceptance Date: 2013-05-20 08:52:09<TR><TD>Description:<TD colspan=9>Fudan

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</TABLE><BR>

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<B>Welcome to iGEM 2013 !</B> Your iGEM 2013 team application was accepted by iGEM Headquarters on 2013-05-20 08:52:09

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and your team registration fee has been received.</TABLE><DIV style='height: 3px'></DIV><TABLE id='table_status' width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: 1px solid gray;background-color: #dcdcdc; padding-left: 10px;padding:10px 15px 0px 15px;line-height: 150%; padding-right:2px;padding-top:3px;' >

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<TABLE_BREAK><TR><TD><img src='https://igem.org/images/green_check.png'> DNA Kit of Parts shipping information has been entered, thanks.

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<A href='Shipping.cgi?group_id=1410'><I> View shipping information</I></A><TR><TD><img src='https://igem.org/images/green_check.png'> Resource description has been submitted, thanks.

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<A href='Resource_Description.cgi?group_id=1410'><I> View resource description</I></A><TR><TD><img src='https://igem.org/images/green_check.png'> Your registration fee has been received. Thank you.

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</TABLE><BR>

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<TABLE width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: none;'><TR><TD nowrap width='30%' style='padding-right: 2em;text-align: left;'><B>Track</B><A style='padding-left:15px;font-size:90%;color:#66f;' href='https://2013.igem.org/Jamboree/Track_Selection'><I>More...</i></A><TD align='center'><TD width='30%' align='right'></TABLE><TABLE id='table_tracks' width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: 1px solid gray;background-color: #dcdcdc; padding-left: 10px;padding:10px 15px 0px 15px;line-height: 150%; padding-right:2px;padding-top:3px;' >

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<TR><TD colspan=9>Assigned Track: Foundational Advance

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<TABLE width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: none;'><TR><TD nowrap width='30%' style='padding-right: 2em;text-align: left;'><B>Title and Abstract</B><A style='padding-left:15px;font-size:90%;color:#66f;' href='https://2013.igem.org/Jamboree/Title_and_Abstract'><I>More...</i></A><TD align='center'><A style='text-decoration: none; color: blue;'

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HREF='abstract_pdf_file.cgi?id=1100' ><I>Download a .pdf version</I></A><TD width='30%' align='right'></TABLE><TABLE id='table_abstract' width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: 1px solid gray;background-color: #dcdcdc; padding-left: 10px;padding:10px 15px 0px 15px;line-height: 150%; padding-right:2px;padding-top:3px;' >

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<TR><TD colspan=9 style='padding:5px 0 5px 0px;width:750px;font-size:10pt;font-weight:bold;' >ALeader: leading the advance of RNA synthetic biology<BR>

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<TR><TD colspan=9 style='padding:5px 0 5px 20px;width:750px;vertical-align:top;' >RNA regulation patterns, which have not been fully understood so far, is a research hotspot still deserving exploiting. A recently-discovered riboswitch ALeader updated our ideas by its delicate, 75nt-structure consisting of an aptamer, a recombination site, and even a bicistron motif. Inspired by this natural design, we proposed a series of novel strategies this summer, with dynamic rather than static perspectives. Guided by the theoretical study on functional multistable states and semi-static states of a riboswitch, and the kinetics involving impacts from other systems such as CRISPR, RNA polymerases, ribosomes, and degradation complex, the ALeader-based functional multi-phase and tricistron switches are designed. We also tried to regulate aptamer’s function by manipulating its working environment instead of itself, with SpinachALeader-based real-time monitors to avoid the signal distortion. Furthermore, to demonstrate the advantages of RNA biobricks, we constructed an antibiotic-detector with ALeader, optimized by a network with a RNA-OUT/IN translational regulatory system.

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<TABLE width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: none;'><TR><TD nowrap width='30%' style='padding-right: 2em;text-align: left;'><B>Team Roster</B><TD align='center'><TD width='30%' align='right'></TABLE><TABLE id='table_roster' width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: 1px solid gray;background-color: #dcdcdc; padding-left: 10px;padding:10px 15px 0px 15px;line-height: 150%; padding-right:2px;padding-top:3px;' >

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<TR><TD style='padding: 3px 0 3px 0'><B>Instructors</B>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=8921'>xmding74</A><TD style='width:200px'>Xiaoming Ding<TD><TD>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=9162'>Ruoyu</A><TD style='width:200px'>Ruoyu Luo<TD><TD>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=18294'>kazaf</A><TD style='width:200px'>Jun Wang<TD><TD></TABLE><DIV style='height: 3px'></DIV><TABLE id='table_roster' width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: 1px solid gray;background-color: #dcdcdc; padding-left: 10px;padding:10px 15px 0px 15px;line-height: 150%; padding-right:2px;padding-top:3px;' >

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<TABLE_BREAK>

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<TR><TD style='padding: 3px 0 3px 0'><B>Student Members</B>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=16163'>Fudan_cyw</A><TD style='width:200px'>Yanwei Cai<TD><TD>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=14489'>Quta_qbbiotheo</A><TD style='width:200px'>Hao-tian Guo<TD><TD>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=16522'>lxykh</A><TD style='width:200px'>Li Xinyi<TD><TD>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=16274'>cheese7</A><TD style='width:200px'>YingQi Lou<TD><TD>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=18219'>luciewen</A><TD style='width:200px'>wen-wen ni<TD><TD>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=18220'>shizhenhu</A><TD style='width:200px'>Shizhen Hu<TD><TD>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=18244'>Shuqidu</A><TD style='width:200px'>Shuqi Du<TD><TD>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=16196'>nzy</A><TD style='width:200px'>Zheyi Ni<TD><TD>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=14456'>WillWay</A><TD style='width:200px'>Wei Wei<TD><TD>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=18286'>nijiadong</A><TD style='width:200px'>Jiadong Ni<TD><TD>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=18288'>cxhe</A><TD style='width:200px'>Chenxi He<TD><TD>

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<TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=16114'>luomei</A><TD style='width:200px'>Mei Luo<TD><TD>

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</TABLE><BR>

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<TR><TD>This range of part numbers has been assigned to your team for use during the summer: <span style='margin-left:10px'>BBa_K1100000 to BBa_K1100999</span>

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</TABLE><BR>

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<li id='t-recentchanges'><a href='/Special:Recentchanges'

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title='Recent changes'>Recent changes</a></li>

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<li id='t-whatlinkshere'><a href='/Special:Whatlinkshere/IGEM 2013 Team Information'

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title='List of all wiki pages that link here'>What links here</a></li>

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title='Recent changes in pages linked from this page'>Related changes</a></li>

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title='Upload files'>Upload file</a> </li>

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<li id='t-specialpages'><a href='/Special:Specialpages'

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title='List of all special pages'>Special pages</a> </li>

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<li id='t-specialpages'><a href='/Special:Preferences'

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title='My preferences'>My preferences</a> </li>

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<li id='t-permalink'><a href='/wiki/index.php?title=IGEM 2013 Team Information&oldid=8'

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title='Permanent link to this version of the page'>Permanent link</a> </li>

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+          <h1 class='firstHeading'>IGEM 2013 Team Information</h1>
+          <div id='bodyContent'>
+              <h3 id='siteSub' class='noprint'>From 2013.igem.org</h3>
+              <div id='contentSub'></div>
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+<TR><TD width='150'>Team Name: <TD colspan=9 style='font-size:150%;line-height:150%;font-weight:800;'>Fudan<div style='display:inline;padding-left:40px;font-size:12px;font-weight:normal'>
+            <A href='https://2013.igem.org/Team:Fudan'>(Visit their wiki)</a><A href='http://partsregistry.org/cgi/dna_transfer/batch_list.cgi?group_id=1410' style='padding-left:20px;'> (Part Submissions)</a></div><TR><TD>Primary Contact (PI): <TD colspan=9>Xiaoming Ding<TR><TD style='vertical-align:top'>Schools:<TD colspan=9><PRE style='width:90%;background:none;border:none;padding: 0px;'>www.fudan.edu.cn</PRE><TR><TD>Division:<TD style='width: 300px'>iGEM<TD>Application Date:&nbsp; 2013-03-31<TR><TD>Section:<TD style='width: 300px'>Overgraduate<TR><TD>Region:<TD style='width:300px'>Asia<TD>Acceptance Date:  2013-05-20 08:52:09<TR><TD>Description:<TD colspan=9>Fudan
+</TABLE><BR>
+<!-- status -->
+<TABLE width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: none;'><TR><TD nowrap width='30%' style='padding-right: 2em;text-align: left;'><B>Registration Status</B><TD align='center'><TD width='30%' align='right'></TABLE><TABLE id='table_status' width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: 1px solid gray;background-color: #dcdcdc; padding-left: 10px;padding:10px 15px 0px 15px;line-height: 150%; padding-right:2px;padding-top:3px;' >
+<TR><TD style='color:#006600;font-size:120%,padding:5px 0 5px 0'>
+                <B>Welcome to iGEM 2013 !</B> Your iGEM 2013 team application was accepted by iGEM Headquarters on 2013-05-20 08:52:09
+                and your team registration fee has been received.</TABLE><DIV style='height: 3px'></DIV><TABLE id='table_status' width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: 1px solid gray;background-color: #dcdcdc; padding-left: 10px;padding:10px 15px 0px 15px;line-height: 150%; padding-right:2px;padding-top:3px;' >
+<TABLE_BREAK><TR><TD><img src='https://igem.org/images/green_check.png'> DNA Kit of Parts shipping information has been entered, thanks.
+                 <A href='Shipping.cgi?group_id=1410'><I> View shipping information</I></A><TR><TD><img src='https://igem.org/images/green_check.png'> Resource description has been submitted, thanks.
+                 <A href='Resource_Description.cgi?group_id=1410'><I> View resource description</I></A><TR><TD><img src='https://igem.org/images/green_check.png'> Your registration fee has been received. Thank you.
+                 <A href='https://2013.igem.org/Team_Registration_Fee'><I> More...</I></A><TABLE_BREAK>
+</TABLE><BR>
+<!-- tracks -->
+<TABLE width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: none;'><TR><TD nowrap width='30%' style='padding-right: 2em;text-align: left;'><B>Track</B><A style='padding-left:15px;font-size:90%;color:#66f;' href='https://2013.igem.org/Jamboree/Track_Selection'><I>More...</i></A><TD align='center'><TD width='30%' align='right'></TABLE><TABLE id='table_tracks' width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: 1px solid gray;background-color: #dcdcdc; padding-left: 10px;padding:10px 15px 0px 15px;line-height: 150%; padding-right:2px;padding-top:3px;' >
+<TR><TD colspan=9>Assigned Track: Foundational Advance
+</TABLE><BR>
+<!-- abstract -->
+<TABLE width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: none;'><TR><TD nowrap width='30%' style='padding-right: 2em;text-align: left;'><B>Title and Abstract</B><A style='padding-left:15px;font-size:90%;color:#66f;' href='https://2013.igem.org/Jamboree/Title_and_Abstract'><I>More...</i></A><TD align='center'><A style='text-decoration: none; color: blue;'
+             HREF='abstract_pdf_file.cgi?id=1100' ><I>Download a .pdf version</I></A><TD width='30%' align='right'></TABLE><TABLE id='table_abstract' width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: 1px solid gray;background-color: #dcdcdc; padding-left: 10px;padding:10px 15px 0px 15px;line-height: 150%; padding-right:2px;padding-top:3px;' >
+<TR><TD colspan=9  style='padding:5px 0 5px 0px;width:750px;font-size:10pt;font-weight:bold;' >ALeader: leading the advance of RNA synthetic biology<BR>
+<TR><TD colspan=9  style='padding:5px 0 5px 20px;width:750px;vertical-align:top;' >RNA regulation patterns, which have not been fully understood so far, is a research hotspot still deserving exploiting. A recently-discovered riboswitch ALeader updated our ideas by its delicate, 75nt-structure consisting of an aptamer, a recombination site, and even a bicistron motif. Inspired by this natural design, we proposed a series of novel strategies this summer, with dynamic rather than static perspectives. Guided by the theoretical study on functional multistable states and semi-static states of a riboswitch, and the kinetics involving impacts from other systems such as CRISPR, RNA polymerases, ribosomes, and degradation complex, the ALeader-based functional multi-phase and tricistron switches are designed. We also tried to regulate aptamer’s function by manipulating its working environment instead of itself, with SpinachALeader-based real-time monitors to avoid the signal distortion. Furthermore, to demonstrate the advantages of RNA biobricks, we constructed an antibiotic-detector with ALeader, optimized by a network with a RNA-OUT/IN translational regulatory system.
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+<TR><TD style='padding: 3px 0 3px 0'><B>Instructors</B>
+<!-- Non-editable Member 19124 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=8921'>xmding74</A><TD style='width:200px'>Xiaoming Ding<TD><TD>
+<!-- Non-editable Member 21552 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=9162'>Ruoyu</A><TD style='width:200px'>Ruoyu Luo<TD><TD>
+<!-- Non-editable Member 21554 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=18294'>kazaf</A><TD style='width:200px'>Jun Wang<TD><TD></TABLE><DIV style='height: 3px'></DIV><TABLE id='table_roster' width='800' border='0' cellspacing='0' cellpadding='0' style='margin-left:auto; margin-right:auto; border: 1px solid gray;background-color: #dcdcdc; padding-left: 10px;padding:10px 15px 0px 15px;line-height: 150%; padding-right:2px;padding-top:3px;' >
+<TABLE_BREAK>
+<TR><TD style='padding: 3px 0 3px 0'><B>Student Members</B>
+<!-- Non-editable Member 19168 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=16163'>Fudan_cyw</A><TD style='width:200px'>Yanwei Cai<TD><TD>
+<!-- Non-editable Member 19288 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=14489'>Quta_qbbiotheo</A><TD style='width:200px'>Hao-tian Guo<TD><TD>
+<!-- Non-editable Member 19373 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=16522'>lxykh</A><TD style='width:200px'>Li Xinyi<TD><TD>
+<!-- Non-editable Member 20636 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=16274'>cheese7</A><TD style='width:200px'>YingQi Lou<TD><TD>
+<!-- Non-editable Member 21483 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=18219'>luciewen</A><TD style='width:200px'>wen-wen ni<TD><TD>
+<!-- Non-editable Member 21490 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=18220'>shizhenhu</A><TD style='width:200px'>Shizhen Hu<TD><TD>
+<!-- Non-editable Member 21509 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=18244'>Shuqidu</A><TD style='width:200px'>Shuqi Du<TD><TD>
+<!-- Non-editable Member 21545 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=16196'>nzy</A><TD style='width:200px'>Zheyi Ni<TD><TD>
+<!-- Non-editable Member 21546 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=14456'>WillWay</A><TD style='width:200px'>Wei Wei<TD><TD>
+<!-- Non-editable Member 21547 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=18286'>nijiadong</A><TD style='width:200px'>Jiadong Ni<TD><TD>
+<!-- Non-editable Member 21549 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=18288'>cxhe</A><TD style='width:200px'>Chenxi He<TD><TD>
+<!-- Non-editable Member 21551 --><TR><TD style='width:150px; padding-left:10px'><A href='User_Information.cgi?user_id=16114'>luomei</A><TD style='width:200px'>Mei Luo<TD><TD>
+</TABLE><BR>
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+<TR><TD>This range of part numbers has been assigned to your team for use during the summer: <span style='margin-left:10px'>BBa_K1100000 to BBa_K1100999</span>
+</TABLE><BR>
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