Team:Goettingen/NoteBook w5
From 2013.igem.org
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<span class="date">05th<img src="https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png" /></span> | <span class="date">05th<img src="https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png" /></span> | ||
<div class="cont"> | <div class="cont"> | ||
- | <p class="timeline-title">Colonies on LB<sup>Amp</sup> plates!!!</p> | + | <p class="timeline-title goe-rt">Colonies on LB<sup>Amp</sup> plates!!!</p> |
<div class="timeline-cont"> | <div class="timeline-cont"> | ||
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</div> | </div> | ||
</div> | </div> | ||
- | + | <br /> | |
<div class="tlob start" id="tl_0704"> | <div class="tlob start" id="tl_0704"> | ||
<span class="date">04th<img src="https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png" /></span> | <span class="date">04th<img src="https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png" /></span> | ||
<div class="cont"> | <div class="cont"> | ||
- | <p class="timeline-title">Rerstriction digestion of part 7 and the GFP-Terminator construct</p> | + | <p class="timeline-title goe-rt">Rerstriction digestion of part 7 and the GFP-Terminator construct</p> |
<div class="timeline-cont"> | <div class="timeline-cont"> | ||
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<p class="MsoNormal"><span lang="EN-US">-Transformation performed according to the | <p class="MsoNormal"><span lang="EN-US">-Transformation performed according to the | ||
methods-folder</span></p> | methods-folder</span></p> | ||
+ | |||
+ | <div class="fbutton">Fold ↑</div> | ||
+ | </div> | ||
+ | <p class="timeline-title goe-dac">Extraction of Terminator and RBS from cultures prepared on 03.07.<br />Digestion of extracted plasmids containing Terminator and RBS</p> | ||
+ | <div class="timeline-cont"> | ||
+ | <p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">Extraction of Terminator and RBS from cultures prepared | ||
+ | on 03.07.</span></b></p> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif""> </span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">extraction | ||
+ | of plasmids via NucleoSpin<sup>R</sup>Plasmid kit</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">concentration | ||
+ | measurement on Nanodrop</span></p> | ||
+ | <table class="MsoTableGrid" border="1" cellspacing="0" cellpadding="0" style="margin-left:36.7pt;border-collapse:collapse;border:none"> | ||
+ | <tbody><tr> | ||
+ | <td width="250" valign="top" style="width:187.65pt;border:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">Sample</span></p> | ||
+ | </td> | ||
+ | <td width="230" valign="top" style="width:172.35pt;border:solid black 1.0pt; | ||
+ | border-left:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">Concentration</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="250" valign="top" style="width:187.65pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif""> </span></p> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">T1</span></p> | ||
+ | </td> | ||
+ | <td width="230" valign="top" style="width:172.35pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif""> </span></p> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">69 ng/µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="250" valign="top" style="width:187.65pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">T2</span></p> | ||
+ | </td> | ||
+ | <td width="230" valign="top" style="width:172.35pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">80 ng/µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="250" valign="top" style="width:187.65pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">T3</span></p> | ||
+ | </td> | ||
+ | <td width="230" valign="top" style="width:172.35pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">118 ng/µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="250" valign="top" style="width:187.65pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">T4</span></p> | ||
+ | </td> | ||
+ | <td width="230" valign="top" style="width:172.35pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">95 ng/µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="250" valign="top" style="width:187.65pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">RBS1</span></p> | ||
+ | </td> | ||
+ | <td width="230" valign="top" style="width:172.35pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">too low</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="250" valign="top" style="width:187.65pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">RBS2</span></p> | ||
+ | </td> | ||
+ | <td width="230" valign="top" style="width:172.35pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">52 ng/µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="250" valign="top" style="width:187.65pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">RBS1</span></p> | ||
+ | </td> | ||
+ | <td width="230" valign="top" style="width:172.35pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">too low</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="250" valign="top" style="width:187.65pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">RBS1</span></p> | ||
+ | </td> | ||
+ | <td width="230" valign="top" style="width:172.35pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">too low</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </tbody></table> | ||
+ | <p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif""> </span></b></p> | ||
+ | <p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">Digestion of extracted plasmids containing Terminator | ||
+ | and RBS </span></b></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:54.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">followed protocol | ||
+ | for digestion as written in BioBrick<sup>R</sup>Assembly Kit</span></p> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif""> </span></p> | ||
+ | <table class="MsoTableGrid" border="1" cellspacing="0" cellpadding="0" style="margin-left:50.9pt;border-collapse:collapse;border:none"> | ||
+ | <tbody><tr> | ||
+ | <td width="296" valign="top" style="width:222.15pt;border:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif""> Terminator: </span></p> | ||
+ | </td> | ||
+ | <td width="232" valign="top" style="width:173.85pt;border:solid black 1.0pt; | ||
+ | border-left:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">Volume</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="296" valign="top" style="width:222.15pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">plasmid | ||
+ | DNA (pSB1C3)</span></p> | ||
+ | </td> | ||
+ | <td width="232" valign="top" style="width:173.85pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">500ng</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="296" valign="top" style="width:222.15pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">PstI</span></p> | ||
+ | </td> | ||
+ | <td width="232" valign="top" style="width:173.85pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">1µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="296" valign="top" style="width:222.15pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">EcoRI</span></p> | ||
+ | </td> | ||
+ | <td width="232" valign="top" style="width:173.85pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">1µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="296" valign="top" style="width:222.15pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">NEB | ||
+ | cutter buffer (10x)</span></p> | ||
+ | </td> | ||
+ | <td width="232" valign="top" style="width:173.85pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">5µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="296" valign="top" style="width:222.15pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">H<sub>2</sub>O</span></p> | ||
+ | </td> | ||
+ | <td width="232" valign="top" style="width:173.85pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">to | ||
+ | 50µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </tbody></table> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:54.0pt;margin-bottom:.0001pt;text-indent:-18.0pt; | ||
+ | line-height:normal"><span lang="EN-US" style="font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-family:"Arial","sans-serif"">incubation for 10min at 37°C</span></p> | ||
+ | <p class="MsoListParagraphCxSpMiddle" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:54.0pt;margin-bottom:.0001pt;text-indent:-18.0pt; | ||
+ | line-height:normal"><span lang="EN-US" style="font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-family:"Arial","sans-serif"">heat inactivation for 20min at 80°C</span></p> | ||
+ | <p class="MsoListParagraphCxSpMiddle" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:54.0pt;margin-bottom:.0001pt;text-indent:-18.0pt; | ||
+ | line-height:normal"><span lang="EN-US" style="font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-family:"Arial","sans-serif"">store at -20°C</span></p> | ||
+ | <p class="MsoListParagraphCxSpMiddle" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:54.0pt;margin-bottom:.0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif""> </span></p> | ||
+ | <table class="MsoTableGrid" border="0" cellspacing="0" cellpadding="0" style="margin-left:54.0pt;border-collapse:collapse;border:none"> | ||
+ | <tbody><tr> | ||
+ | <td width="156" valign="top" style="width:117.35pt;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpMiddle" style="margin-top:0cm;margin-right: | ||
+ | 0cm;margin-bottom:0cm;margin-left:-1.45pt;margin-bottom:.0001pt;line-height: | ||
+ | normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">M| T1| T2| | ||
+ | T3| T4</span></p> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin:0cm;margin-bottom:.0001pt; | ||
+ | line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif""><img border="0" width="121" height="168" id="图片 7" src="https://static.igem.org/mediawiki/2013/c/cb/Goe-dac-Image016.gif" alt="20130704_terminatorPart7_digest"></span></p> | ||
+ | </td> | ||
+ | <td width="342" valign="top" style="width:256.25pt;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:54.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:Wingdings;color:#00B050">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif";color:#00B050">Digestion | ||
+ | failed</span></p> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif""> </span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:54.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">set up digestion | ||
+ | again</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:54.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">add 1µl of PstI | ||
+ | and 1µl of EcoRI-HF</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:54.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">incubation for | ||
+ | 45min at 37°C</span></p> | ||
+ | <p class="MsoListParagraph" style="margin:0cm;margin-bottom:.0001pt; | ||
+ | line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif""> </span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </tbody></table> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">RBS:</span></p> | ||
+ | <table class="MsoTableGrid" border="1" cellspacing="0" cellpadding="0" style="margin-left:43.8pt;border-collapse:collapse;border:none"> | ||
+ | <tbody><tr> | ||
+ | <td width="269" valign="top" style="width:201.4pt;border:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" align="center" style="margin-top:0cm; | ||
+ | margin-right:0cm;margin-bottom:0cm;margin-left:8.75pt;margin-bottom:.0001pt; | ||
+ | text-align:center;line-height:normal"><span lang="EN-US" style="font-family: | ||
+ | "Arial","sans-serif"">Components</span></p> | ||
+ | </td> | ||
+ | <td width="211" valign="top" style="width:158.6pt;border:solid black 1.0pt; | ||
+ | border-left:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" align="center" style="margin-bottom:0cm; | ||
+ | margin-bottom:.0001pt;text-align:center;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">Volume</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="269" valign="top" style="width:201.4pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:8.75pt;margin-bottom:.0001pt;line-height: | ||
+ | normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">plasmid | ||
+ | DNA (pSB1C3)</span></p> | ||
+ | </td> | ||
+ | <td width="211" valign="top" style="width:158.6pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">10µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="269" valign="top" style="width:201.4pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:8.75pt;margin-bottom:.0001pt;line-height: | ||
+ | normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">PstI</span></p> | ||
+ | </td> | ||
+ | <td width="211" valign="top" style="width:158.6pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">1µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="269" valign="top" style="width:201.4pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:8.75pt;margin-bottom:.0001pt;line-height: | ||
+ | normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">EcoRI</span></p> | ||
+ | </td> | ||
+ | <td width="211" valign="top" style="width:158.6pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">1µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="269" valign="top" style="width:201.4pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:8.75pt;margin-bottom:.0001pt;line-height: | ||
+ | normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">NEB | ||
+ | cutter buffer (10x)</span></p> | ||
+ | </td> | ||
+ | <td width="211" valign="top" style="width:158.6pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">5µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="269" valign="top" style="width:201.4pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:8.75pt;margin-bottom:.0001pt;line-height: | ||
+ | normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">H<sub>2</sub>O</span></p> | ||
+ | </td> | ||
+ | <td width="211" valign="top" style="width:158.6pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">33µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </tbody></table> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:54.0pt;margin-bottom:.0001pt;text-indent:-18.0pt; | ||
+ | line-height:normal"><span lang="EN-US" style="font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-family:"Arial","sans-serif"">incubation for 30min at 37°C</span></p> | ||
+ | <p class="MsoListParagraphCxSpMiddle" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:54.0pt;margin-bottom:.0001pt;text-indent:-18.0pt; | ||
+ | line-height:normal"><span lang="EN-US" style="font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-family:"Arial","sans-serif"">heat inactivation for 20min at 80°C</span></p> | ||
+ | <p class="MsoListParagraphCxSpMiddle" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:54.0pt;margin-bottom:.0001pt;text-indent:-18.0pt; | ||
+ | line-height:normal"><span lang="EN-US" style="font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-family:"Arial","sans-serif"">store at -20°C</span></p> | ||
+ | <p class="MsoListParagraphCxSpMiddle" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:54.0pt;margin-bottom:.0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">M |R2 |T1 |T2| T3| T4</span></p> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:54.0pt;margin-bottom:.0001pt;line-height:normal"><span lang="EN-US"><img border="0" width="159" height="187" id="图片 10" src="https://static.igem.org/mediawiki/2013/a/ab/Goe-dac-Image017.gif" alt="20130705_digestion_Terminator_RBS"></span></p> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif""> </span></p> | ||
+ | |||
<div class="fbutton">Fold ↑</div> | <div class="fbutton">Fold ↑</div> | ||
Line 358: | Line 728: | ||
</div> | </div> | ||
</div> | </div> | ||
- | + | <br /> | |
<div class="tlob start" id="tl_0703"> | <div class="tlob start" id="tl_0703"> | ||
<span class="date">03th<img src="https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png" /></span> | <span class="date">03th<img src="https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png" /></span> | ||
<div class="cont"> | <div class="cont"> | ||
- | <p class="timeline-title">Restriction | + | <p class="timeline-title goe-rt">Restriction |
Digest of Parts 1-4 for cloning from 1.7.13 - Run on 4% gel</p> | Digest of Parts 1-4 for cloning from 1.7.13 - Run on 4% gel</p> | ||
<div class="timeline-cont"> | <div class="timeline-cont"> | ||
Line 523: | Line 893: | ||
mso-hansi-font-family:"Times New Roman";mso-char-type:symbol;mso-symbol-font-family: | mso-hansi-font-family:"Times New Roman";mso-char-type:symbol;mso-symbol-font-family: | ||
Wingdings"><span style="mso-char-type:symbol;mso-symbol-font-family:Wingdings">à</span></span><span lang="EN-US">No biobrick in the DarR operator construct!<o:p></o:p></span></b></p> | Wingdings"><span style="mso-char-type:symbol;mso-symbol-font-family:Wingdings">à</span></span><span lang="EN-US">No biobrick in the DarR operator construct!<o:p></o:p></span></b></p> | ||
+ | |||
+ | <div class="fbutton">Fold ↑</div> | ||
+ | </div> | ||
+ | <p class="timeline-title goe-dac">Transformation of T7 promoter<br />Cultivation of E.coli containing Terminator and RBS</p> | ||
+ | <div class="timeline-cont"> | ||
+ | <td width="643" valign="top" style="width:17.0cm;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">Transformation of T7 promoter</span></b></p> | ||
+ | <p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif""> </span></b></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">use T7 | ||
+ | promoter BBa_1712074 in pSB1AK8 backbone (plate 5, 6N)</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">resuspend | ||
+ | in 10µl H<sub>2</sub>O</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">incubation | ||
+ | at RT for 5min.</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">transformation | ||
+ | of 2µl T7 promoter with 200µl of comp. E.coli cells and incubation for 30min | ||
+ | on ice</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">90sec | ||
+ | heat shock at 42°C</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">5min on | ||
+ | ice</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">add | ||
+ | 800µl LB medium and incubate for 1h at 37°C with agitation</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">plate | ||
+ | out 100µl of transformation mixture on LB medium containing amikacin </span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">centrifuge | ||
+ | tubes for 1min, discard 800µl and plate out the rest on new plates</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">incubate | ||
+ | plates for 2 days at 37°C</span></p> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif""> </span></p> | ||
+ | <p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">Cultivation of E.coli containing Terminator and RBS </span></b></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">reporter | ||
+ | team cloned terminator (BBa_B0015; pSB1C3 backbone; Cm-resistance) and RBS | ||
+ | (BBa_0034; pBS1A2; Amp-resistance) into E.coli</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">inoculation | ||
+ | of each 4 liquid cultures in LB containing Cm and Amp</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">incubation | ||
+ | at 37°C o/n with agitation</span></p> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif""> </span></p> | ||
+ | </td> | ||
<div class="fbutton">Fold ↑</div> | <div class="fbutton">Fold ↑</div> | ||
Line 528: | Line 956: | ||
</div> | </div> | ||
</div> | </div> | ||
+ | <br /> | ||
<div class="tlob start" id="tl_0702"> | <div class="tlob start" id="tl_0702"> | ||
<span class="date" style="left:-5px">02nd<img src="https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png"></span> | <span class="date" style="left:-5px">02nd<img src="https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png"></span> | ||
<div class="cont" style="left:-10px"> | <div class="cont" style="left:-10px"> | ||
- | <p class="timeline-title">Plasmid Mini Preparation</p> | + | <p class="timeline-title goe-rt">Plasmid Mini Preparation</p> |
<div class="timeline-cont"> | <div class="timeline-cont"> | ||
<p class="MsoNormal"><b style="mso-bidi-font-weight:normal"><span lang="EN-US">Back-up | <p class="MsoNormal"><b style="mso-bidi-font-weight:normal"><span lang="EN-US">Back-up | ||
Line 671: | Line 1,100: | ||
<div class="fbutton">Fold ↑</div> | <div class="fbutton">Fold ↑</div> | ||
</div> | </div> | ||
+ | <p class="timeline-title goe-dac">Digestion of plasmid pSB1C3 with EcoRI and PstI from | ||
+ | linear precursor<br />Dephosphorylation of vector pSB1C3<br />Ligation of Strep-Tag; S. aureus DAC domain purified and S.aureus non purified with pSB1C3<br />Transformation of ligated samples with competent E.coli cells</p> | ||
+ | <div class="timeline-cont"> | ||
+ | |||
+ | <p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">Digestion of plasmid pSB1C3 with EcoRI and PstI from | ||
+ | linear precursor</span></b></p> | ||
+ | <p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif""> </span></b></p> | ||
+ | <table class="MsoTableGrid" border="1" cellspacing="0" cellpadding="0" style="border-collapse:collapse;border:none"> | ||
+ | <tbody><tr> | ||
+ | <td width="292" valign="top" style="width:219.1pt;border:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">Components:</span></p> | ||
+ | </td> | ||
+ | <td width="236" valign="top" style="width:176.9pt;border:solid black 1.0pt; | ||
+ | border-left:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">Volume</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="292" valign="top" style="width:219.1pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">plasmid | ||
+ | DNA (pSB1C3)</span></p> | ||
+ | </td> | ||
+ | <td width="236" valign="top" style="width:176.9pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">20µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="292" valign="top" style="width:219.1pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">PstI</span></p> | ||
+ | </td> | ||
+ | <td width="236" valign="top" style="width:176.9pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">1µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="292" valign="top" style="width:219.1pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">EcoRI</span></p> | ||
+ | </td> | ||
+ | <td width="236" valign="top" style="width:176.9pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">1µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="292" valign="top" style="width:219.1pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">NEB | ||
+ | cutter buffer (10x)</span></p> | ||
+ | </td> | ||
+ | <td width="236" valign="top" style="width:176.9pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">5µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="292" valign="top" style="width:219.1pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">H<sub>2</sub>O</span></p> | ||
+ | </td> | ||
+ | <td width="236" valign="top" style="width:176.9pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">23µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </tbody></table> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif""> </span></p> | ||
+ | <p class="MsoListParagraphCxSpMiddle" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:54.0pt;margin-bottom:.0001pt;text-indent:-18.0pt; | ||
+ | line-height:normal"><span lang="EN-US" style="font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-family:"Arial","sans-serif"">incubation for 30min at 37°C</span></p> | ||
+ | <p class="MsoListParagraphCxSpMiddle" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:54.0pt;margin-bottom:.0001pt;text-indent:-18.0pt; | ||
+ | line-height:normal"><span lang="EN-US" style="font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-family:"Arial","sans-serif"">heat inactivation for 20min at 65°C</span></p> | ||
+ | <p class="MsoListParagraphCxSpMiddle" style="margin-top:0cm;margin-right:0cm; | ||
+ | margin-bottom:0cm;margin-left:54.0pt;margin-bottom:.0001pt;text-indent:-18.0pt; | ||
+ | line-height:normal"><span lang="EN-US" style="font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-family:"Arial","sans-serif"">store at -20°C</span></p> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif""> </span></p> | ||
+ | <p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">Dephosphorylation of vector pSB1C3</span></b></p> | ||
+ | <table class="MsoTableGrid" border="1" cellspacing="0" cellpadding="0" style="border-collapse:collapse;border:none"> | ||
+ | <tbody><tr> | ||
+ | <td width="295" valign="top" style="width:221.2pt;border:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">Components:</span></p> | ||
+ | </td> | ||
+ | <td width="233" valign="top" style="width:174.8pt;border:solid black 1.0pt; | ||
+ | border-left:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">Volume</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="295" valign="top" style="width:221.2pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">digested | ||
+ | pSB1C3</span></p> | ||
+ | </td> | ||
+ | <td width="233" valign="top" style="width:174.8pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">50µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="295" valign="top" style="width:221.2pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">antarch’s | ||
+ | buffer (10x)</span></p> | ||
+ | </td> | ||
+ | <td width="233" valign="top" style="width:174.8pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">5µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="295" valign="top" style="width:221.2pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">antarch’s | ||
+ | phosphatase</span></p> | ||
+ | </td> | ||
+ | <td width="233" valign="top" style="width:174.8pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">1µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </tbody></table> | ||
+ | <p class="MsoListParagraph" style="margin-left:0cm;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif""> </span></p> | ||
+ | <p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">Measurement of DNA concentration</span></b></p> | ||
+ | <table class="MsoTableGrid" border="1" cellspacing="0" cellpadding="0" style="border-collapse:collapse;border:none"> | ||
+ | <tbody><tr> | ||
+ | <td width="322" valign="top" style="width:241.65pt;border:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">Sample</span></p> | ||
+ | </td> | ||
+ | <td width="206" valign="top" style="width:154.35pt;border:solid black 1.0pt; | ||
+ | border-left:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">Concentration</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="322" valign="top" style="width:241.65pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">pSB1C3 (digested/dephosphorylated) </span></p> | ||
+ | </td> | ||
+ | <td width="206" valign="top" style="width:154.35pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">5,4ng/µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="322" valign="top" style="width:241.65pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">Strep-Tag | ||
+ | (digested) | ||
+ | </span></p> | ||
+ | </td> | ||
+ | <td width="206" valign="top" style="width:154.35pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">126ng/µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="322" valign="top" style="width:241.65pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">S. areus DAC domain | ||
+ | (digested) </span></p> | ||
+ | </td> | ||
+ | <td width="206" valign="top" style="width:154.35pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">181ng/µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </tbody></table> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif""> </span></p> | ||
+ | <p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">Ligation of Strep-Tag; S. aureus DAC domain purified | ||
+ | and S.aureus non purified with pSB1C3</span></b></p> | ||
+ | <table class="MsoTableGrid" border="1" cellspacing="0" cellpadding="0" style="border-collapse:collapse;border:none"> | ||
+ | <tbody><tr> | ||
+ | <td width="292" valign="top" style="width:219.1pt;border:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">Strep-Tag - | ||
+ | components:</span></p> | ||
+ | </td> | ||
+ | <td width="236" valign="top" style="width:176.9pt;border:solid black 1.0pt; | ||
+ | border-left:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">Volume</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="292" valign="top" style="width:219.1pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">insert | ||
+ | (Strep-Tag)</span></p> | ||
+ | </td> | ||
+ | <td width="236" valign="top" style="width:176.9pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">1µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="292" valign="top" style="width:219.1pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">plasmid | ||
+ | DNA (pSB1C3)</span></p> | ||
+ | </td> | ||
+ | <td width="236" valign="top" style="width:176.9pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">2µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="292" valign="top" style="width:219.1pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">T4 | ||
+ | ligase</span></p> | ||
+ | </td> | ||
+ | <td width="236" valign="top" style="width:176.9pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">1µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="292" valign="top" style="width:219.1pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">T4 | ||
+ | ligase buffer (10x)</span></p> | ||
+ | </td> | ||
+ | <td width="236" valign="top" style="width:176.9pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">2µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="292" valign="top" style="width:219.1pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">H<sub>2</sub>O</span></p> | ||
+ | </td> | ||
+ | <td width="236" valign="top" style="width:176.9pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">14µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </tbody></table> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif""> </span></p> | ||
+ | <table class="MsoTableGrid" border="1" cellspacing="0" cellpadding="0" style="border-collapse:collapse;border:none"> | ||
+ | <tbody><tr> | ||
+ | <td width="384" valign="top" style="width:288.25pt;border:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">S.aureus purified | ||
+ | and non purified - components:</span></p> | ||
+ | </td> | ||
+ | <td width="144" valign="top" style="width:107.75pt;border:solid black 1.0pt; | ||
+ | border-left:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">Volume</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="384" valign="top" style="width:288.25pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">insert | ||
+ | (S. aureus DAC domain)</span></p> | ||
+ | </td> | ||
+ | <td width="144" valign="top" style="width:107.75pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">1µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="384" valign="top" style="width:288.25pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">plasmid | ||
+ | DNA (pSB1C3)</span></p> | ||
+ | </td> | ||
+ | <td width="144" valign="top" style="width:107.75pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">2µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="384" valign="top" style="width:288.25pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">T4 | ||
+ | ligase</span></p> | ||
+ | </td> | ||
+ | <td width="144" valign="top" style="width:107.75pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">1µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="384" valign="top" style="width:288.25pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">T4 | ||
+ | ligase buffer (10x)</span></p> | ||
+ | </td> | ||
+ | <td width="144" valign="top" style="width:107.75pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">2µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td width="384" valign="top" style="width:288.25pt;border:solid black 1.0pt; | ||
+ | border-top:none;padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpFirst" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">H<sub>2</sub>O</span></p> | ||
+ | </td> | ||
+ | <td width="144" valign="top" style="width:107.75pt;border-top:none;border-left: | ||
+ | none;border-bottom:solid black 1.0pt;border-right:solid black 1.0pt; | ||
+ | padding:0cm 5.4pt 0cm 5.4pt"> | ||
+ | <p class="MsoListParagraphCxSpLast" style="margin-bottom:0cm;margin-bottom: | ||
+ | .0001pt;line-height:normal"><span lang="EN-US" style="font-family:"Arial","sans-serif"">14µl</span></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </tbody></table> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif""> </span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:54.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">incubation for 1h | ||
+ | at room temperature</span></p> | ||
+ | <p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family: | ||
+ | "Arial","sans-serif"">Transformation of ligated samples with competent E.coli | ||
+ | cells</span></b></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">add | ||
+ | ligation sample to 200µl of comp. cells and incubate for 30min on ice</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:54.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:Wingdings">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">each 2µl and 10µl | ||
+ | of ligated Strep-Tag, DAC domain S.aureus and relegation control used</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">90sec | ||
+ | heat shock at 42°C</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">5min on | ||
+ | ice</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">add | ||
+ | 800µl LB medium and incubate for 1h at 37°C with agitation</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">plate | ||
+ | out 100µl of transformation mixture on LB medium containing 35µg/ml chloamph. | ||
+ | </span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">centrifuge | ||
+ | tubes for 1min, discard 800µl and plate out the rest on new plates</span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:36.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">-<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif"">incubate | ||
+ | plates for 2 days at 37°C</span></p> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif""> </span></p> | ||
+ | <p class="MsoNormal" align="left" style="margin-left:54.0pt;text-align:left; | ||
+ | text-indent:-18.0pt;text-autospace:ideograph-other;vertical-align:baseline"><span lang="EN-US" style="font-size:11.0pt;font-family:Wingdings;color:#00B050">è<span style="font:7.0pt "Times New Roman""> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif";color:#00B050">Transformation | ||
+ | failed</span></p> | ||
+ | <p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Arial","sans-serif""> </span></p> | ||
+ | |||
+ | |||
+ | <div class="fbutton">Fold ↑</div> | ||
</div> | </div> | ||
</div> | </div> | ||
- | + | </div> | |
+ | <br /> | ||
<div class="tlob start" id="tl_0701"> | <div class="tlob start" id="tl_0701"> | ||
<span class="date">01st<img src="https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png" /></span> | <span class="date">01st<img src="https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png" /></span> | ||
<div class="cont"> | <div class="cont"> | ||
- | <p class="timeline-title">Restriction of parts 1 – 4 to cut out promoters for ligation with operator plasmid and restriction of part 8 for inserting GFP-Terminator cassette</p> | + | <p class="timeline-title goe-rt">Restriction of parts 1 – 4 to cut out promoters for ligation with operator plasmid and restriction of part 8 for inserting GFP-Terminator cassette</p> |
<div class="timeline-cont"> | <div class="timeline-cont"> | ||
Line 902: | Line 1,755: | ||
<div class="fbutton">Fold ↑</div> | <div class="fbutton">Fold ↑</div> | ||
</div> | </div> | ||
- | </ | + | <p class="timeline-title goe-dac">Primer iGEM_17 designed (used for deletion of the restriction site in DAC domain of S. pneumoniae</p> |
- | < | + | <div class="timeline-cont"> |
+ | |||
+ | <div class="fbutton">Fold ↑</div> | ||
+ | </div></div> | ||
+ | </div> | ||
+ | <br /> | ||
</html> | </html> |
Latest revision as of 19:59, 30 September 2013
![](https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png)
Colonies on LBAmp plates!!!
Transformation of Ligation with GFP-Terminator insert and part 8 backbone worked!!!
No clones on negative control, but very few clones on without insert control. à possibly again incomplete digestion of part 8 (just 20 min) à use 1 h for dig, since reaction for gel ex yesterday seemed to be more completely digested….
Stored at 4 °C
No colonies on LBCm plates
è Further incubation till next morning
![](https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png)
Rerstriction digestion of part 7 and the GFP-Terminator construct
Part 7:
15 µl part 7 plasmid DNA (1 µg)
10 µl NEB buffer 2.1
2 µl EcoRI
2 µl PstI
71 µl H2O
GFP-Term:
5 µl GFP-Term C1 plasmid DNA (1 µg)
10 µl NEB buffer 2.1
2 µl XbaI
2 µl PstI
81 µl H2O
Both reactions were split into 2x 50µl (for more thorough reaction)
Both incubated for 30 min at 37°C, then heat inactivation for 20 min at 80°C
Gel-Extraction of pSB1C3 from the restriction digest of part 7 (EcoRI+PstI) for future ligations
Gel:
Purification of DNA from gel using Qiagen PCR purification kit:
- like Katrin 25.06.2013
Elution with 30 µl HPLC water (pre-warmed)
NanoDrop:
pSB1C3 clone |
Concentration (ng/µl) |
A260nm/A280nm |
A260nm/A230nm |
1 |
6.2 |
1.35 |
0.12 |
2 |
11.3 |
1.27 |
0.21 |
3 |
10.2 |
1.71 |
0.06 |
è DNA frozen away in one of the red boxes with today´s date on the vial.
Clonation of the RBS-GFP-Terminator Construct:
Gel-Extraction of the GFP-Terminator construct from the restriction digest (XbaI+PstI), ligation into opened RBS-Vector (Part 8) and transformation
Gel:
Purification of DNA from gel using Qiagen PCR purification kit:
- like Katrin 25.06.2013
- Elution with 30 µl HPLC water (pre-warmed)
NanoDrop:
GFP-Term clone |
Concentration (ng/µl) |
A260nm/A280nm |
A260nm/A230nm |
1 |
5.4 |
1.75 |
0.07 |
2 |
19.5 |
1.62 |
0.19 |
3 |
6.2 |
1.32 |
0.10 |
è DNA frozen away in one of the red boxes with today´s date on the vial.
Ligation
-Clone 2 was used for ligation to the opened RBS-Vector (also known as part 8 –see 1.7.13)
-ligation was pipetted as follows:
13.5µl HPLC H2O
2µl Ligase buffer
2.5µl RBS-Vector DNA (~20ng)
1µl GFP-Term Clone 2 DNA (~20ng)
1µl Ligase
-For the control, the GFP-Term.-Insert was substituted with HPLC H2O
-Ligation was performed at RT for 10 minutes
-Heat-inactivation was performed at 80°C for 20 minutes
Transformation
-The whole ligation was used for the transformation.
-Transformation performed according to the methods-folder
Extraction of Terminator and RBS from cultures prepared on 03.07.
Digestion of extracted plasmids containing Terminator and RBS
Extraction of Terminator and RBS from cultures prepared on 03.07.
- extraction of plasmids via NucleoSpinRPlasmid kit
- concentration measurement on Nanodrop
Sample |
Concentration |
T1 |
69 ng/µl |
T2 |
80 ng/µl |
T3 |
118 ng/µl |
T4 |
95 ng/µl |
RBS1 |
too low |
RBS2 |
52 ng/µl |
RBS1 |
too low |
RBS1 |
too low |
Digestion of extracted plasmids containing Terminator and RBS
è followed protocol for digestion as written in BioBrickRAssembly Kit
Terminator: |
Volume |
plasmid DNA (pSB1C3) |
500ng |
PstI |
1µl |
EcoRI |
1µl |
NEB cutter buffer (10x) |
5µl |
H2O |
to 50µl |
è incubation for 10min at 37°C
è heat inactivation for 20min at 80°C
è store at -20°C
M| T1| T2| T3| T4 |
è Digestion failed
è set up digestion again è add 1µl of PstI and 1µl of EcoRI-HF è incubation for 45min at 37°C
|
RBS:
Components |
Volume |
plasmid DNA (pSB1C3) |
10µl |
PstI |
1µl |
EcoRI |
1µl |
NEB cutter buffer (10x) |
5µl |
H2O |
33µl |
è incubation for 30min at 37°C
è heat inactivation for 20min at 80°C
è store at -20°C
M |R2 |T1 |T2| T3| T4
![](https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png)
Restriction Digest of Parts 1-4 for cloning from 1.7.13 - Run on 4% gel
- 0.5 µl uncut plasmid + 3.5 µl dH2O + 1 µl LD 5x
- Ca. 40 ng of R.D. of plasmids (= 4 µl) supplied with 1 µl of LD 5x
- Run at 100 V on 4 %-agarose-1xTAE gel; marker: log ladder (3 µl)
- EtBr staining, destaining, UV detection
Uncut plasmids visible (between 3 and 8kb,
although about 2.5kb big), linearized plasmids visible (between 8 and 10 kb…),
promoter fragments not visible at all (should be 30-120bps). Will add picture
later.
Discussion:
The thick gel might have unrepresentative effects on large fragments (e.g. plasmids). This thesis is supported by the unreadable marker bands between 3 and 8 kb.
The promoter fragments might just be too small to be stained properly or they are not in the constructs. Only sequencing can solve this riddle…
Wells used as follows:
M_Part1uncut_Part1RD_Part2uncut_Part2RD_Part3uncut_Part3RD_Part4uncut_part4RD_M
used Marker: NEB Quick-Load 2-Log DNA Ladder (0.1-10kb)
Restriction
digestion of isolated plasmids from yesterday run on 1% gel (for 1.5h)
can not open scn file. Saved under Reporter team gel doc in folder with this date (gel doc 2013-07-03 15hr 29min, control = 14hr 34 min)
Wells as following:
RiboA (C1,C2,C3), RiboB (C1, C2, C3), RiboC (C1), RiboD (C1, C2, C3), lin part7 (C1, C2, C3), DarR (C1, C2, C4), GFP (C1,C2,C4), pSB1C3 (C1, C2, C3)
same order of wells for control
Control:
Digested:
è GFP-Terminator construct could be cloned successfully (fragment of slightly > 1 kb corresponding likely to GFP (ca. 900 bp) and terminator (ca. 170 bp) visible)
è Clones derived from transformation of linearzised part 7 contain apparently plasmid with part 7 (terminator) à ca. 200 bp fragment visible after digest, corresponding presumably to terminator à clones result possibly from transformation of not linearized plasmids present after incomplete digest of part 7
è For C2 of RiboB cloning, a weak band at ca. 200 bp could be detected, that does not fit with the expected insert of 370 bp à something else got cloned…
è For transformations of ligation reactions containing linearized pSB1C3 as a vector, no transformants containing the desired inserts could be obtained à plasmid that was transformed could be one of the residual template plasmids containing Promoter-RBS-RFP-Terminator (ca. 1.5 kb): after R.D., bands at 1.5 kb and 2 kb corresponding to the expected fragments could be detected. However, band at 1.5 kb is very weak, and for uncut plasmids, a strong band at this height representing the supercoiled plasmid could be detected à it’s also possible that pSB1C3 can’t be restricted properly… anyway, linearized pSB1C3 seems not to work for cloning à cut out terminator from part 7, extract backbone (= linearized pSB1C3) and use it for cloning of Ribo- and DarR biobricks instead…
Sequencing
data arrived!
àNo biobrick in the DarR operator construct!
Transformation of T7 promoter
Cultivation of E.coli containing Terminator and RBS
Transformation of T7 promoter
- use T7 promoter BBa_1712074 in pSB1AK8 backbone (plate 5, 6N)
- resuspend in 10µl H2O
- incubation at RT for 5min.
- transformation of 2µl T7 promoter with 200µl of comp. E.coli cells and incubation for 30min on ice
- 90sec heat shock at 42°C
- 5min on ice
- add 800µl LB medium and incubate for 1h at 37°C with agitation
- plate out 100µl of transformation mixture on LB medium containing amikacin
- centrifuge tubes for 1min, discard 800µl and plate out the rest on new plates
- incubate plates for 2 days at 37°C
Cultivation of E.coli containing Terminator and RBS
- reporter team cloned terminator (BBa_B0015; pSB1C3 backbone; Cm-resistance) and RBS (BBa_0034; pBS1A2; Amp-resistance) into E.coli
- inoculation of each 4 liquid cultures in LB containing Cm and Amp
- incubation at 37°C o/n with agitation
![](https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png)
Plasmid Mini Preparation
Back-up
plates
-
for all inoculated clones
(except for clones containing plasmids for parts 1 – 4)
-
incubation over day at 37 °C
-
stored at 4 °C
Plasmid
Mini Preparation
-
for all inoculated clones
-
kit from Macherey-Nagel
-
elution with pre-warmed 30 µl
HPLC water
-
DarR biobrick clone 3: almost
all lysate spilled…
-
Concentration measurement on
NanoDrop
Concentrations:
è DarR biobrick clone 3 has
strangely high concentration
Test
restriction digest of isolated plasmids
è Cut out inserts with EcoRI and PstI (Fermentas/ThermoScientific
enzymes, not distribution kit!)
è Only 3 clones tested, if there are 5 to waste less enzyme…
For
1 reaction (10 µl total volume)
0.5 µl PstI
0.5 µl EcoRI
1 µl buffer 0 (both enzymes have 100 %
activity and no star activity in this buffer)
3 µl plasmid DNA mix containing ca. 200 –
300 ng plasmid (see picture of NanoDrop table above, rightmost + smallest part
of table)
5 µl dH2O
è Master Mix consisting of
12.5 µl PstI
12.5 µl EcoRI
25 µl buffer 0
125 µl dH2O
è In total: 250 µl
è Add 7 µl to each plasmid DNA mix
Incubation for ca. 1 h at 37 °C
Freezing of samples at -20°C
Digestion of plasmid pSB1C3 with EcoRI and PstI from
linear precursor
Dephosphorylation of vector pSB1C3
Ligation of Strep-Tag; S. aureus DAC domain purified and S.aureus non purified with pSB1C3
Transformation of ligated samples with competent E.coli cells
Digestion of plasmid pSB1C3 with EcoRI and PstI from linear precursor
Components: |
Volume |
plasmid DNA (pSB1C3) |
20µl |
PstI |
1µl |
EcoRI |
1µl |
NEB cutter buffer (10x) |
5µl |
H2O |
23µl |
è incubation for 30min at 37°C
è heat inactivation for 20min at 65°C
è store at -20°C
Dephosphorylation of vector pSB1C3
Components: |
Volume |
digested pSB1C3 |
50µl |
antarch’s buffer (10x) |
5µl |
antarch’s phosphatase |
1µl |
Measurement of DNA concentration
Sample |
Concentration |
pSB1C3 (digested/dephosphorylated) |
5,4ng/µl |
Strep-Tag (digested) |
126ng/µl |
S. areus DAC domain (digested) |
181ng/µl |
Ligation of Strep-Tag; S. aureus DAC domain purified and S.aureus non purified with pSB1C3
Strep-Tag - components: |
Volume |
insert (Strep-Tag) |
1µl |
plasmid DNA (pSB1C3) |
2µl |
T4 ligase |
1µl |
T4 ligase buffer (10x) |
2µl |
H2O |
14µl |
S.aureus purified and non purified - components: |
Volume |
insert (S. aureus DAC domain) |
1µl |
plasmid DNA (pSB1C3) |
2µl |
T4 ligase |
1µl |
T4 ligase buffer (10x) |
2µl |
H2O |
14µl |
è incubation for 1h at room temperature
Transformation of ligated samples with competent E.coli cells
- add ligation sample to 200µl of comp. cells and incubate for 30min on ice
è each 2µl and 10µl of ligated Strep-Tag, DAC domain S.aureus and relegation control used
- 90sec heat shock at 42°C
- 5min on ice
- add 800µl LB medium and incubate for 1h at 37°C with agitation
- plate out 100µl of transformation mixture on LB medium containing 35µg/ml chloamph.
- centrifuge tubes for 1min, discard 800µl and plate out the rest on new plates
- incubate plates for 2 days at 37°C
è Transformation failed
![](https://static.igem.org/mediawiki/2013/b/b7/Goe-timeline-dot.png)
Restriction of parts 1 – 4 to cut out promoters for ligation with operator plasmid and restriction of part 8 for inserting GFP-Terminator cassette
Reactions according to manual of
Distribution kit:
-
Parts 1 – 3: restriction of 1
µg plasmid DNA with SpeI and EcoRI-HF; 100 µl in total (DNA, enzyme amounts
and buffer amount doubled compared to common 50 µl reaction; but distributed
to 2 epis with 50 µl each à more complete reaction)
-
Part 4: restriction of ca.
250 ng plasmid DNA (8.7 µl from 29.5 ng/µl solution) with SpeI and EcoRI-HF
-
Part 8: restriction of 500 ng
plasmid DNA with SpeI and PstI
-
For parts 1,2, and 3:
MasterMix consisting of both enzymes and buffer and sufficient for 4
reactions was used
è 20 min at 37 °C digestion
è 20 min at 80 °C heat-kill
-
1xTAE-1%agarose gel
-
Load 3 µl of each digest (ca.
30 ng) and 1 µl of plasmid as a control, supplied with 5xDLD
-
3 µl of log ladder as marker
-
Run at 100 V
-
EtBr staining + destaining
Gel:
è Still, R.D. is partial à next time: try 30 min incubation
è One can conclude linearization of all plasmids, but promoter
fragments are not visible…. Try higher concentrated gel and load higher
amounts of DNA
è Reactions stored at – 20 °C
Transformation
from 27.6.13
-
Colonies grew on all plates
except for negative controls and those of pSB1C3 transformation
-
Colonies on
without-insert-control of linearized pSB1C3 look slightly pink à remaining template from PCR transformed = pSB1C3 plasmid?
-
Colonies on
without-insert-control of linearized part 7 vector might result from not
digested plasmid (partial digestion, as usual….)
-
Just 1 clone for Riboswitch
biobrick C…
-
Inoculation of 5 clones for
each (except for Ribo C) transformation; for without-insert-controls, 3
clones each were inoculated; 4 ml LB+Cm (35 µg/ml)
-
Incubation ON
New
plasmid preparation for parts 1 – 4
-
Inoculation of parts 1, 3, 4 C1
and part 2 C2 in 4 ml LB+Amp
-
Incubation ON
Re-streak clones for parts 6 and 7 on 35 µg/ml Cm plates + incubation on
Purification
of part 8 (RD) products from today
PCR
clean-up with Qiagen kit
Elution with 50 µl HPLC water
(pre-warmed)
NanoDrop:
|
Concentration (ng/µl) |
A260nm/A280nm |
A260nm/A230nm |
part 8 purification |
7.5 |
1.34 |
1.39 |
Either just low amounts of DNA in the sample or the purification was not very efficient. Eluded a second time
with 20µl, no DNA found.
Primer iGEM_17 designed (used for deletion of the restriction site in DAC domain of S. pneumoniae