Team:Dundee/Project/LabOverview

From 2013.igem.org

(Difference between revisions)
 
(10 intermediate revisions not shown)
Line 1: Line 1:
 +
{{:Team:Dundee/Templates/Navigationbar}}
 +
<html>
<html>
<html lang="en">
<html lang="en">
-
  <head>
 
-
    <meta charset="utf-8">
 
-
    <title>iGEM Dundee 2013 &middot; Toxi-Mop</title>
 
-
    <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-
    <meta name="description" content="">
 
-
    <meta name="author" content="">
 
-
 
-
    <!-- CSS -->
 
-
    <link href=' http://fonts.googleapis.com/css?family=Open+Sans' rel='stylesheet' type='text/css'>
 
-
    <link href="http://www.kyleharrison.co.uk/igem/assets/css/bootstrap.css" rel="stylesheet">
 
-
    <link href="http://www.kyleharrison.co.uk/igem/assets/css/style.css" rel="stylesheet">
 
-
 
-
    <!--
 
-
    <link href="http://www.kyleharrison.co.uk/igem/assets/css/bootstrap-responsive.css" rel="stylesheet">
 
-
-->
 
-
    <!-- HTML5 shim, for IE6-8 support of HTML5 elements -->
 
-
    <!--[if lt IE 9]>
 
-
      <script src="http://www.kyleharrison.co.uk/igem/assets/js/html5shiv.js"></script>
 
-
    <![endif]-->
 
-
 
-
    <!-- Fav and touch icons -->
 
-
    <link rel="apple-touch-icon-precomposed" sizes="144x144" href="../assets/ico/apple-touch-icon-144-precomposed.png">
 
-
    <link rel="apple-touch-icon-precomposed" sizes="114x114" href="../assets/ico/apple-touch-icon-114-precomposed.png">
 
-
      <link rel="apple-touch-icon-precomposed" sizes="72x72" href="../assets/ico/apple-touch-icon-72-precomposed.png">
 
-
                    <link rel="apple-touch-icon-precomposed" href="../assets/ico/apple-touch-icon-57-precomposed.png">
 
-
                                  <link rel="shortcut icon" href="../assets/ico/favicon.png">
 
-
  </head>
 
-
 
-
  <body>
 
-
 
-
    <!-- Part 1: Wrap all page content here -->
 
-
    <div id="wrap">
 
-
 
-
      <!-- Fixed navbar -->
 
-
      <div class="navbar navbar-fixed-top">
 
-
        <div class="navbar-inner">
 
-
 
-
          <div class="container">
 
-
            <button type="button" class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse">
 
-
              <span class="icon-bar"></span>
 
-
              <span class="icon-bar"></span>
 
-
              <span class="icon-bar"></span>
 
-
            </button>
 
-
            <a class="brand" href="/Team:Dundee">Dundee iGEM 2013</a>
 
-
            <div class="nav-collapse collapse">
 
-
              <ul class="nav">
 
-
                <li class="active"><a href="/Team:Dundee">Home</a></li>
 
-
                <li class="dropdown">
 
-
                  <a href="#" class="dropdown-toggle" data-toggle="dropdown">Team <b class="caret"></b></a>
 
-
                  <ul class="dropdown-menu">
 
-
                    <li><a href="/Team:Dundee/Team">Meet the Team</a></li>
 
-
                    <li><a href="https://igem.org/Team.cgi?id=1012">Team Information</a></li>
 
-
                    <li><a href="/Team:Dundee/Team/Acknowledgements">Acknowledgements</a></li>
 
-
                    <li><a href="/Team:Dundee/Team/Attributions">Attributions</a></li>
 
-
                    <li><a href="/Team:Dundee/Team/Gallery">Gallery</a></li>
 
-
                    <li><a href="/Team:Dundee/Team/Contact">Contact</a></li>
 
-
                  </ul>
 
-
                </li>
 
-
 
-
                <li class="dropdown">
 
-
                  <a href="#" class="dropdown-toggle" data-toggle="dropdown">Project <b class="caret"></b></a>
 
-
                  <ul class="dropdown-menu">
 
-
                    <li><a href="/Team:Dundee/Project">Project Overview</a></li>
 
-
                    <li><a href="/Team:Dundee/Project/Notebook">Notebook</a></li>
 
-
                    <li class="divider"></li>
 
-
                    <li class="nav-header">Lab</li>
 
-
 
-
                    <li><a href="/Team:Dundee/Project/LabOverview">Lab Overview</a></li>
 
-
                    <li><a href="/Team:Dundee/Project/Mop">Mop</a></li>
 
-
                    <li><a href="/Team:Dundee/Project/Detector">Detector</a></li>
 
-
                    <li class="divider"></li>
 
-
                    <li class="nav-header">Modelling </li>
 
-
                    <li><a href="/Team:Dundee/Project/MathOverview">Modelling Overview</a></li>
 
-
                    <li><a href="/Team:Dundee/Project/MathTheory">Theory</a></li>
 
-
                    <li class="divider"></li>
 
-
                    <li class="nav-header">Software</li>
 
-
                  <li><a href="/Team:Dundee/Project/SoftwareOverview">Software Overview</a></li>
 
-
                  <!--<li><a href="/Team:Dundee/Project/SoftwareTheory">Mop-toppus</a></li>-->
 
-
                  </ul>
 
-
                </li>
 
-
 
-
                <li class="dropdown">
 
-
                  <a href="#" class="dropdown-toggle" data-toggle="dropdown">Parts <b class="caret"></b></a>
 
-
                  <ul class="dropdown-menu">
 
-
                    <li><a href="#">Our Biobricks</a></li>
 
-
                    <li><a href="#">Improvements</a></li>
 
-
                  </ul>
 
-
                </li>
 
-
 
-
                <li class="dropdown">
 
-
                  <a href="#" class="dropdown-toggle" data-toggle="dropdown">Safety <b class="caret"></b></a>
 
-
                  <ul class="dropdown-menu">
 
-
                    <li><a href="#">General Safety</a></li>
 
-
                    <li><a href="#">Safety in the Lab</a></li>
 
-
                    <li><a href="#">Public Safety and Awareness</a></li>
 
-
                    <li><a href="#">Enviromental Safety</a></li>
 
-
                  </ul>
 
-
                </li>
 
-
 
-
                <li class="dropdown">
 
-
                  <a href="#" class="dropdown-toggle" data-toggle="dropdown">Human Practice <b class="caret"></b></a>
 
-
                  <ul class="dropdown-menu">
 
-
                    <li><a href="#">Overview</a></li>
 
-
                    <li><a href="#">Collaboration</a></li>
 
-
                    <li><a href="#">Outreach</a></li>
 
-
                    <li><a href="/Team:Dundee/HumanPractice/CaseStudy">Clatto Case Study</a></li>
 
-
                    <li class="divider"></li>
 
-
                    <li class="nav-header">Media</li>
 
-
                    <li><a href="http://www.youtube.com/channel/UCvHOQ9Y1PqKInj6iCwLqTJw/feed?view_as=public">Youtube Channel</a></li>
 
-
                    <li><a href="#">Graphic Novel</a></li>
 
-
                    <li><a href="http://www.flickr.com/photos/97927329@N05/">Flickr</a></li>
 
-
                    <li><a href="#">Video Game</a></li>
 
-
                    <li class="divider"></li>
 
-
                    <li class="nav-header">Social Media</li>
 
-
                    <li><a href="https://www.facebook.com/DundeeiGem2013">Facebook</a></li>
 
-
                    <li><a href="https://twitter.com/DundeeiGEMTeam">Twitter</a></li>
 
-
                    <li><a href="https://plus.google.com/u/0/116223511035478208262/posts?hl=en_US">Google+</a></li>
 
-
                   
 
-
                  </ul>
 
-
                </li>
 
-
 
-
                <!--
 
-
                <li class="dropdown">
 
-
                  <a href="#" class="dropdown-toggle" data-toggle="dropdown">Sponsors <b class="caret"></b></a>
 
-
                  <ul class="dropdown-menu">
 
-
                    <li><a href="/Team:Dundee/Sponsors">Our Sponsors</a></li>
 
-
                    <li><a href="#">Sponsorship Levels</a></li>
 
-
                  </ul>
 
-
                </li>
 
-
              -->
 
-
              <li><a href="/Team:Dundee/Sponsors">Our Sponsors</a></li>
 
-
 
-
 
-
              </ul>
 
-
            </div><!--/.nav-collapse -->
 
-
          </div>
 
-
        </div>
 
-
      </div>
 
       <!-- Begin page content -->
       <!-- Begin page content -->
Line 145: Line 9:
       <!-- Title -->
       <!-- Title -->
       <div class="page-header">
       <div class="page-header">
-
           <h2><b>Wet Lab Overview </b> </h2>
+
           <h2><b>Lab Overview </b> </h2>
         </div>
         </div>
       <!-- Title End -->
       <!-- Title End -->
Line 152: Line 16:
       <!-- the main content -->  
       <!-- the main content -->  
-
         <div class="span6" style="text-align:justify">
+
         <div class="span12" style="text-align:justify">
-
        <h2 style="margin-top:-10px;"> Insight to the Biological World </h2>
+
<p>The Dundee iGEM team consisted of two teams: the wet lab and the dry lab. The wet team was responsible for all of the experimental lab work as the team comprised of three microbiologists, two molecular biologists and a biomedical scientist. There were four members of the dry team from different disciplines: a mathematical biologist, a mathematician, a physicist and a software developer. <br><br>
-
        <p> Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum. </p>
+
-
        <br>
+
-
        <p> Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum. </p>
+
-
          <!--
+
-
        <br><br> <h3>The modelling of the ToxiMop project will have four main areas:</h3>
+
-
          <br><div style="margin-left:50px;">&nbsp;1. <b>Mop </b>
+
-
          <br>&nbsp;2.  <b>Detector</b>
+
-
          <br>&nbsp;3.  <b>Algae/Microcystin growth/population dynamics- problem justification</b>
+
-
          <br>&nbsp;4.  <b>Predictive</b></div> -->
+
-
        </p>
+
-
        <br>
+
-
        </div>
+
-
        <div class="span6">
+
Working in different locations meant that we had to be efficient in communicating with one another. We held weekly meetings every Friday afternoon to present data and progress from the previous week.<br><br>
-
      <img id="image-6" style="width:600px;height:300px"src="http://www.gregerwikstrand.com/blog/wp-content/uploads/2012/03/wordle-for-gregerwikstrand.jpg">
+
From experimental data the wet team were able to provide the dry team with concentrations of PP1 in <i>E. coli</i> cells and how effective the bacteria mops were so that they could compare the figures to their models. <br><br>
-
          </div>
+
The dry team helped the wet team by creating a Matlab program for calculating molar concentrations and series dilutions of chemicals. Their mathematical models were also able to provide predictive information to allow the wet team to know what step to take next with their lab work. <br><br>
-
      </div><!-- Row End -->
+
-
      <!-- Row two -->
+
This communication between the teams, and how they worked parallel to each other, led to efficient teamwork throughout the project. </p>
-
      <div class="row" style="margin-top:20px;">
+
-
        <div class="span6" style="text-align:justify">
 
-
          <h2 style="margin-top:-10px;"> Mop (Sensor) </h2>
 
-
          <p> The mop models will firstly incorporate the production and transportation of PP1 in both E. coli and Bacillus. It will then extend to the interaction of the engineered bacterium with microcystin in the mop application with simulations. </p>
 
-
        </div>
 
-
        <div class="span6" style="text-align:justify">
 
-
          <h2 style="margin-top:-10px;"> Detector</h2>
 
-
          <p>
 
-
            The fine details of the detector models are to be confirmed following further research.</p>
 
         </div>
         </div>
-
      </div>
 
-
 
-
        <div class="row">
 
-
      <!-- the main content -->
 
-
 
-
        <div class="span6">
 
-
          <img id="image-6" src="http://placehold.it/600x300/0699C1/000000&text=Mop Image">
 
-
          </div>
 
-
 
-
        <div class="span6">
 
-
          <img id="image-6" src="http://placehold.it/600x300/C6E546/000000&text=Detector Image">
 
-
          </div>
 
       </div><!-- Row End -->
       </div><!-- Row End -->
-
      <!-- Row two -->
+
<div id="push"></div>
-
      <div class="row" style="margin-top:20px;">
+
<div id="push"></div>
-
 
+
<div id="push"></div>
-
        <div class="span6" style="text-align:justify">
+
<div id="push"></div>
-
          <h2 style="margin-top:-10px;"> Algae/Microcystin </h2>
+
<div id="push"></div>
-
          <p>
+
-
          We aim to produce some sort of simulation to help identify the issues of 24 hr detection systems against our planned machine.
+
-
          </p>
+
-
      </div>
+
-
 
+
-
        <div class="span6" style="text-align:justify">
+
-
          <h2 style="margin-top:-10px;"> Predictive</h2>
+
-
          <p>
+
-
            Develop a predictive model to be used in conjunction with octopus detecting machine for ToxiTweet. Octopus detecting machine modelling.</p>
+
-
        </div>
+
-
      </div>
+
-
 
+
-
 
+
-
      <div class="row">
+
-
      <!-- the main content -->
+
-
 
+
-
        <div class="span6">
+
-
          <img id="image-6" src="http://placehold.it/600x300/8066DB/000000&text=Algae/Microcystin">
+
-
          </div>
+
-
 
+
-
        <div class="span6">
+
-
          <img id="image-6" src="http://placehold.it/600x300/EB3C8B/000000&text=Predictive">
+
-
          </div>
+
-
      </div><!-- Row End -->
+
-
 
+
-
 
+
-
 
+
-
 
+
-
 
+
-
 
+
       <div id="push"></div>
       <div id="push"></div>
     </div>
     </div>

Latest revision as of 21:11, 1 October 2013

iGEM Dundee 2013 · ToxiMop

Dundee 2013

Lab Overview

The Dundee iGEM team consisted of two teams: the wet lab and the dry lab. The wet team was responsible for all of the experimental lab work as the team comprised of three microbiologists, two molecular biologists and a biomedical scientist. There were four members of the dry team from different disciplines: a mathematical biologist, a mathematician, a physicist and a software developer.

Working in different locations meant that we had to be efficient in communicating with one another. We held weekly meetings every Friday afternoon to present data and progress from the previous week.

From experimental data the wet team were able to provide the dry team with concentrations of PP1 in E. coli cells and how effective the bacteria mops were so that they could compare the figures to their models.

The dry team helped the wet team by creating a Matlab program for calculating molar concentrations and series dilutions of chemicals. Their mathematical models were also able to provide predictive information to allow the wet team to know what step to take next with their lab work.

This communication between the teams, and how they worked parallel to each other, led to efficient teamwork throughout the project.

Retrieved from "http://2013.igem.org/Team:Dundee/Project/LabOverview"