Team:UNITN-Trento/Notebook/Labposts/07/18

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Latest revision as of 10:36, 3 October 2013

{"date" : "2013-07-05","author" : "emil","title" : " Purification of the second run of Inocula of ligation and re-ligation of the digested products ","content" : " I added 1µl of DPN1 to the insert and 1µl of SAP to the backbones.Then I have purified the inocula following the miniprep protocol.Afterwards I quantified them toghether with the results of the purification of the digestion products(performed following the purification protocol ) with the following results:

Quantification

Sample	Quantification
1:1 024+0840 E	482.6ng/µl
1:1 024+0840 E	700ng/µl
1:1 024+0840	373.1ng/µl
1:3 024+0840	423.5ng/µl
1:3 024+0840	327.8ng/µl
1:1 026+0840	293.1ng/µl
1:1 026+0840	1243ng/µl
1:3 026+0840	766.4ng/µl
1:3 026+0840	369.1ng/µl
GFP	15.9ng/µl
K823026	36.3ng/µl
K823026	43.7ng/µl

Then I digested 800 ng of each sample with EcoR1 HF and Pst1 following the digestion protocol with the following results:

Gel order

Sample	Well
Ladder 1kb Fermentas	1
BBa_K823024+BBa_E0840 A	3
BBa_K823024+BBa_E0840 B	5
BBa_K823024+BBa_E0840 C	6
BBa_K823024+BBa_E0840 D	7
BBa_K823024+BBa_E0840 E	8
BBa_K823026+BBa_E0840 F	9
BBa_K823026+BBa_E0840 G	10
BBa_K823026+BBa_E0840 H	11
BBa_K823026+BBa_E0840 I	12

Gel image

As we can see no one of the wells shows the right insert in the lower band(there is always the previous insert the RFP + Lac promoter ~ 1200 bp).At the same time I did the ligation of K823024+E0840 and K823026+E0840 previously digested following the ligation protocol .
N.B. Remember always to spin the ligation buffer before using
After that I plated the product of the ligation as done before(1:1,1:3,ctrl for each sample) on Ampicillin added LB.","tags" : "K832024-K823026-E0840"}

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+{"date" : "2013-07-05","author" : "emil","title" : " Purification of the second run of Inocula of ligation and re-ligation of the digested products ","content" : "<html> I added 1&micro;l of DPN1 to the insert and 1&micro;l of SAP to the backbones.Then I have purified the inocula following the <a href=\"https://2013.igem.org/Team:UNITN-Trento/Protocols#miniprep\"> miniprep protocol</a>.Afterwards I quantified them toghether with the results of the purification of the digestion products(performed following the <a href=\"https://2013.igem.org/Team:UNITN-Trento/Protocols#Promega-PCR-Gel\"> purification protocol </a>) with the following results:</html>{{:Team:UNITN-Trento/Templates/Styles/Spoiler|Quantification|<html><center><table class=\"tn-sp-table\"><tr><th>Sample</th><th>Quantification</th></tr><tr><td>1:1 024+0840 E</td><td>482.6ng/&micro;l</td></tr><tr><td>1:1 024+0840 E</td><td>700ng/&micro;l</td></tr><tr><td>1:1 024+0840</td><td>373.1ng/&micro;l</td></tr><tr><td>1:3 024+0840</td><td>423.5ng/&micro;l</td></tr><tr><td>1:3 024+0840</td><td>327.8ng/&micro;l</td></tr><tr><td>1:1 026+0840</td><td>293.1ng/&micro;l</td></tr><tr><td>1:1 026+0840</td><td>1243ng/&micro;l</td></tr><tr><td>1:3 026+0840</td><td>766.4ng/&micro;l</td></tr><tr><td>1:3 026+0840</td><td>369.1ng/&micro;l</td></tr><tr><td>GFP</td><td>15.9ng/&micro;l</td></tr><tr><td>K823026</td><td>36.3ng/&micro;l</td></tr><tr><td>K823026</td><td>43.7ng/&micro;l</td></tr></table></center></html>}}<html>Then I digested 800 ng of each sample with EcoR1 HF and Pst1 following the <a href=\"https://2013.igem.org/Team:UNITN-Trento/Protocols#Digestion\">digestion protocol</a> with the following results:</html>{{:Team:UNITN-Trento/Templates/Styles/Spoiler|Gel order|<html><center><table class=\"tn-sp-table\"><tr><th>Sample</th><th>Well</th></tr><tr><td>Ladder 1kb Fermentas</td><td>1</td></tr><tr><td>BBa_K823024+BBa_E0840 A</td><td>3</td></tr><tr><td>BBa_K823024+BBa_E0840 B</td><td>5</td></tr><tr><td>BBa_K823024+BBa_E0840 C</td><td>6</td></tr><tr><td>BBa_K823024+BBa_E0840 D</td><td>7</td></tr><tr><td>BBa_K823024+BBa_E0840 E</td><td>8</td></tr><tr><td>BBa_K823026+BBa_E0840 F</td><td>9</td></tr><tr><td>BBa_K823026+BBa_E0840 G</td><td>10</td></tr><tr><td>BBa_K823026+BBa_E0840 H</td><td>11</td></tr><tr><td>BBa_K823026+BBa_E0840 I</td><td>12</td></tr></table></center></html>}}{{:Team:UNITN-Trento/Templates/Styles/Spoiler|Gel image|<html><img src=\"https://static.igem.org/mediawiki/2013/4/4b/Tn-20130705-ET-Ligation_screening2.jpg\" width=\"450\" /></html>}}<html>As we can see no one of the wells shows the right insert in the lower band(there is always the previous insert the RFP + Lac promoter ~ 1200 bp).At the same time I did the ligation of K823024+E0840 and K823026+E0840 previously digested following the <a href=\"https://2013.igem.org/Team:UNITN-Trento/Protocols#Ligation\"> ligation protocol </a>.<br>N.B. Remember always to spin the ligation buffer before using<br> After that I plated the product of the ligation as done before(1:1,1:3,ctrl for each sample) on Ampicillin added LB.</html>","tags" : "K832024-K823026-E0840"}
-	"date" : "2013-07-21",
-	"author" : "fabio-bruno",
-	"title" : " blue and red light sensors!!",
-	"content" : "<html> today we decided to get our parts sequenced, so I prepared sequencing samples and tomorrow they will be sent to a sequencing company. <br>We also inoculate the new part: k952003. From now on Bruno and I will take our own paths!!</html>",
-	"tags" : " YF1_FixJ - FixK2- ho1_PcyA_cph8-OmpR-YF1_FixJ_PfixK2_amilGFP"
-}