Team:Groningen/protocols/PCR

From 2013.igem.org

(Difference between revisions)
 
(51 intermediate revisions not shown)
Line 35: Line 35:
<li>DNA template</li>
<li>DNA template</li>
</ul>
</ul>
 +
 +
<p>
<p>
<br>
<br>
<h5>PCR reaction mixture:</h5>
<h5>PCR reaction mixture:</h5>
-
<table border="1">
+
<table id="normal" width="60%">
   <tr>
   <tr>
     <th>Component</th>
     <th>Component</th>
-
     <th width="30%">50 &micro;l</th>
+
     <th>50 ml</th>
-
     <th>Final concentration</th>
+
     <th>Final concentration</th>  
   </tr>
   </tr>
Line 66: Line 68:
   <tr>
   <tr>
     <td>10 mM dNTPs</td>
     <td>10 mM dNTPs</td>
-
     <td>1&micro;l</td>
+
     <td>1 &micro;l</td>
     <td>200 &micro;M</td>
     <td>200 &micro;M</td>
   </tr>
   </tr>
Line 99: Line 101:
<br>
<br>
<h5>Cycling instructions:</h5>
<h5>Cycling instructions:</h5>
-
<table border="1">
+
<table id="normal" width="60%">
   <tr>
   <tr>
     <th>Temperature</th>
     <th>Temperature</th>
Line 108: Line 110:
   <tr>
   <tr>
     <td>98&deg;C</td>
     <td>98&deg;C</td>
-
     <td ALIGN=CENTER>2 min</td>
+
     <td>2 min</td>
     <td>1</td>
     <td>1</td>
   </tr>
   </tr>
Line 114: Line 116:
   <tr>
   <tr>
     <td>98&deg;C</td>
     <td>98&deg;C</td>
-
     <td ALIGN=CENTER>10 sec</td>
+
     <td>10 sec</td>
     <td rowspan="3">34</td>
     <td rowspan="3">34</td>
   </tr>
   </tr>
Line 120: Line 122:
   <tr>
   <tr>
     <td>T<sub>m</sub>-5&deg;C</td>
     <td>T<sub>m</sub>-5&deg;C</td>
-
     <td ALIGN=CENTER>25 sec</td>
+
     <td>25 sec</td>
   </tr>
   </tr>
   <tr>
   <tr>
     <td>72&deg;C</td>
     <td>72&deg;C</td>
-
     <td ALIGN=CENTER>30 sec/kb</td>
+
     <td>30 sec/kb</td>
   </tr>
   </tr>
   <tr>
   <tr>
     <td>72&deg;C</td>
     <td>72&deg;C</td>
-
     <td ALIGN=CENTER>10 min</td>
+
     <td>10 min</td>
     <td>1</td>
     <td>1</td>
   </tr>
   </tr>
Line 136: Line 138:
   <tr>
   <tr>
     <td>4&deg;C</td>
     <td>4&deg;C</td>
-
     <td ALIGN=CENTER>&infin;</td>
+
     <td>&infin;</td>
     <td>1</td>
     <td>1</td>
   </tr>
   </tr>

Latest revision as of 23:25, 4 October 2013

PCR

Materials:
  • PCR tubes
  • MQ water
  • DMSO 5%
  • Phusion buffer
  • DNTPs
  • F- and R-primer
  • Phusion Polymerase
  • DNA template


PCR reaction mixture:
Component 50 ml Final concentration
MQ water up to 50 µl
5x Phusion Buffer 10 µl 1x
DMSO 5% 1.5 µl
10 mM dNTPs 1 µl 200 µM
primer F 2.5 µl 0.5 µM
primer R 2.5 µl 0.5 µM
template DNA 1 µl ∼1 ng
Phusion Polymerase
2 U/µl		 0.3 µl 0.01 U/µl


Cycling instructions:
Temperature Time Number of Cycles
98°C 2 min 1
98°C 10 sec 34
Tm-5°C 25 sec
72°C 30 sec/kb
72°C 10 min 1
4°C ∞ 1

Reference: http://www.thermoscientificbio.com/uploadedFiles/Resources/f-530s-product-information.pdf