"
Team:Paris Saclay/Modeling/FNR/hsimcode
From 2013.igem.org
(Difference between revisions)
(Created page with "//translation fnr to FNR inactived fnr -> fnr + FNRi [Probability]; //2 FNRi bind FNRi + FNRi -> FNRa [Probability]; //to many FNRa will reduce FNR production FNRa + mfnr -> FNRa...") |
|||
| (One intermediate revision not shown) | |||
| Line 1: | Line 1: | ||
| - | //translation fnr to FNR inactived | + | <blockquote> |
| - | fnr -> fnr + FNRi [Probability]; | + | //translation fnr to FNR inactived<br> |
| - | //2 FNRi bind | + | fnr -> fnr + FNRi [Probability];<br> |
| - | FNRi + FNRi -> FNRa [Probability]; | + | //2 FNRi bind <br> |
| - | //to many FNRa will reduce FNR production | + | FNRi + FNRi -> FNRa [Probability];<br> |
| - | FNRa + mfnr -> FNRa*mfnr [Probability]; | + | //to many FNRa will reduce FNR production<br> |
| - | FNRa*mfnr -> FNRa + mfnr [Probability]; | + | FNRa + mfnr -> FNRa*mfnr [Probability];<br> |
| - | //deactivation FNR | + | FNRa*mfnr -> FNRa + mfnr [Probability];<br> |
| - | FNRa + o2 -> FNRi + FNRi [Probability]; | + | //deactivation FNR<br> |
| - | //degradation FNR | + | FNRa + o2 -> FNRi + FNRi [Probability];<br> |
| - | FNRi + ClpXP -> ClpXP [Probability]; | + | //degradation FNR<br> |
| - | FNRa + proteinase1 -> proteinase1 [Probability]; | + | FNRi + ClpXP -> ClpXP [Probability];<br> |
| - | //green reporter protein production | + | FNRa + proteinase1 -> proteinase1 [Probability];<br> |
| - | FNRa + FNRa -> FNRa_binded [Probability]; | + | //green reporter protein production<br> |
| - | FNRa_binded -> FNRa + FNRa [Probability]; | + | FNRa + FNRa -> FNRa_binded [Probability];<br> |
| - | FNRa_binded + green_proteingreen_protein_gene -> FNRa_binded_green_proteingreen_protein_gene [Probability]; | + | FNRa_binded -> FNRa + FNRa [Probability];<br> |
| - | FNRa_binded_green_protein_gene -> FNRa_binded + green_protein_gene[Probability]; | + | FNRa_binded + green_proteingreen_protein_gene -> FNRa_binded_green_proteingreen_protein_gene [Probability];<br> |
| - | FNRa_binded_green_protein_gene -> green_protein + FNRa_binded_green_protein[Probability]; | + | FNRa_binded_green_protein_gene -> FNRa_binded + green_protein_gene[Probability];<br> |
| - | //red protein repression with 4 FNR activated | + | FNRa_binded_green_protein_gene -> green_protein + FNRa_binded_green_protein[Probability];<br> |
| - | FNRa_binded + red_protein_gene -> FNRa_binded_red_protein_gene [Probability]; | + | //red protein repression with 4 FNR activated<br> |
| - | FNRa_binded_red_protein_gene + FNRa_binded_red_protein_gene -> repression_red_protein [Probability]; | + | FNRa_binded + red_protein_gene -> FNRa_binded_red_protein_gene [Probability];<br> |
| - | repression_red_protein -> FNRa_binded_red_protein_gene + FNRa_binded_red_protein_gene [Probability]; | + | FNRa_binded_red_protein_gene + FNRa_binded_red_protein_gene -> repression_red_protein [Probability];<br> |
| - | FNRa_binded_red_protein_gene -> FNRa_binded + red_protein_gene[Probability]; | + | repression_red_protein -> FNRa_binded_red_protein_gene + FNRa_binded_red_protein_gene [Probability];<br> |
| - | //production of red protein when aerobic | + | FNRa_binded_red_protein_gene -> FNRa_binded + red_protein_gene[Probability];<br> |
| - | red_protein_gene + red_protein_gene -> red_protein_gene_binded[Probability]; | + | //production of red protein when aerobic<br> |
| - | red_protein_gene_binded -> red_protein_gene_binded + red_protein [Probability]; | + | red_protein_gene + red_protein_gene -> red_protein_gene_binded[Probability];<br> |
| - | GPR_binded -> red_protein_gene + red_protein_gene[Probability]; | + | red_protein_gene_binded -> red_protein_gene_binded + red_protein [Probability];<br> |
| - | //degradation of protein | + | GPR_binded -> red_protein_gene + red_protein_gene[Probability];<br> |
| - | red_protein + proteinase2 -> proteinase2 [Probability]; | + | //degradation of protein<br> |
| - | green_protein + proteinase3 -> proteinase3 [Probability]; | + | red_protein + proteinase2 -> proteinase2 [Probability];<br> |
| + | green_protein + proteinase3 -> proteinase3 [Probability];<br> | ||
| + | </blockquote> | ||
| + | |||
| + | |||
| + | [https://2013.igem.org/Team:Paris_Saclay/Modeling/FNR#Transcribe_equation_to_Hsim_code Back] | ||
Latest revision as of 00:15, 5 October 2013
//translation fnr to FNR inactived
fnr -> fnr + FNRi [Probability];
//2 FNRi bind
FNRi + FNRi -> FNRa [Probability];
//to many FNRa will reduce FNR production
FNRa + mfnr -> FNRa*mfnr [Probability];
FNRa*mfnr -> FNRa + mfnr [Probability];
//deactivation FNR
FNRa + o2 -> FNRi + FNRi [Probability];
//degradation FNR
FNRi + ClpXP -> ClpXP [Probability];
FNRa + proteinase1 -> proteinase1 [Probability];
//green reporter protein production
FNRa + FNRa -> FNRa_binded [Probability];
FNRa_binded -> FNRa + FNRa [Probability];
FNRa_binded + green_proteingreen_protein_gene -> FNRa_binded_green_proteingreen_protein_gene [Probability];
FNRa_binded_green_protein_gene -> FNRa_binded + green_protein_gene[Probability];
FNRa_binded_green_protein_gene -> green_protein + FNRa_binded_green_protein[Probability];
//red protein repression with 4 FNR activated
FNRa_binded + red_protein_gene -> FNRa_binded_red_protein_gene [Probability];
FNRa_binded_red_protein_gene + FNRa_binded_red_protein_gene -> repression_red_protein [Probability];
repression_red_protein -> FNRa_binded_red_protein_gene + FNRa_binded_red_protein_gene [Probability];
FNRa_binded_red_protein_gene -> FNRa_binded + red_protein_gene[Probability];
//production of red protein when aerobic
red_protein_gene + red_protein_gene -> red_protein_gene_binded[Probability];
red_protein_gene_binded -> red_protein_gene_binded + red_protein [Probability];
GPR_binded -> red_protein_gene + red_protein_gene[Probability];
//degradation of protein
red_protein + proteinase2 -> proteinase2 [Probability];
green_protein + proteinase3 -> proteinase3 [Probability];
