Team:Groningen/protocols/biofilm media

From 2013.igem.org

(Difference between revisions)
 
(13 intermediate revisions not shown)
Line 22: Line 22:
<div class="mainContent">
<div class="mainContent">
 +
Make an overnight culture of the strains of interest in LB broth.
 +
<br>1 ml of the O/N culture is required for every 10 ml of Sgg medium (2x SG supplemented with 1% [wt/vol] glycerol).
 +
<br>This will be incubated at 27&deg;C for 5 days.
-
<br>The strains were grown overnight at 37°C on LB broth.
+
<h5>Media for macrocolony formation</h5>
-
<br>Next, 1 ml of liquid culture was used to inoculate every 10 ml MSgg medium. this in turn was incubated at 27&deg;C for 5 days.
+
<H5 id="special">2x SG Medium (100 ml)</H5>
-
 
+
<table id="normal" width="70%">
-
 
+
-
 
+
-
<h2>Media for macrocolony formation</h2>
+
-
 
+
-
<br><H5>2x SG medium (100 mL)</H5>
+
-
<table id="normal">
+
   <tr>
   <tr>
     <th>compound</th>
     <th>compound</th>
Line 40: Line 37:
   <tr>
   <tr>
     <td>Nutrient broth (Difco)</td>
     <td>Nutrient broth (Difco)</td>
-
     <td ALIGN=CENTER>1.6 g</td>
+
     <td>1.6 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 46: Line 43:
   <tr>
   <tr>
     <td>KCl</td>
     <td>KCl</td>
-
     <td ALIGN=CENTER>0.2 g</td>
+
     <td>0.2 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 52: Line 49:
   <tr>
   <tr>
     <td>MgSO<sub>4</sub>.7H<sub>2</sub>O </td>
     <td>MgSO<sub>4</sub>.7H<sub>2</sub>O </td>
-
     <td ALIGN=CENTER>0.05 g</td>
+
     <td>0.05 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 58: Line 55:
   <tr>
   <tr>
     <td>agar</td>
     <td>agar</td>
-
     <td ALIGN=CENTER>1.5 g</td>
+
     <td>1.5 g</td>
-
     <td> </td>
+
     <td></td>
   </tr>
   </tr>
<tr>
<tr>
     <td></td>
     <td></td>
-
     <td ALIGN=CENTER></td>
+
     <td></td>
     <td> add everything together and autoclave</td>
     <td> add everything together and autoclave</td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>Ca(NO<sub>3</sub>)<sub>2</sub>.4H<sub>2</sub>O  1 mM</td>
+
     <td>Ca(NO<sub>3</sub>)<sub>2</sub>.4H<sub>2</sub>O  (1 mM)</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 ml</td>
-
     <td> </td>
+
     <td></td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O 0.1 mM</td>
+
     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O (0.1 mM)</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>FeSO<sub>4</sub>  1 &micro;M</td>
+
     <td>FeSO<sub>4</sub>  (1 &micro;M)</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 ml</td>
-
     <td> </td>
+
     <td></td>
   </tr>
   </tr>
<tr>
<tr>
     <td>0.1% glucose </td>
     <td>0.1% glucose </td>
-
     <td ALIGN=CENTER>0.5 mL</td>
+
     <td>0.5 ml</td>
-
     <td> </td>
+
     <td></td>
   </tr>
   </tr>
</table>  
</table>  
Line 95: Line 92:
-
<br><H5>LB/Mn/glucose medium (100 mL)</H5>
+
<br><H5 id="special">LB/Mn/Glucose Medium (100 ml)</H5>
-
<table id="normal">
+
<table id="normal" width="70%">
   <tr>
   <tr>
     <th>compound</th>
     <th>compound</th>
Line 104: Line 101:
   <tr>
   <tr>
-
     <td>LB/ 1.5% agar</td>
+
     <td>LB 1.5% agar</td>
-
     <td ALIGN=CENTER>100 ml</td>
+
     <td>100 ml</td>
     <td>autoclave</td>
     <td>autoclave</td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O  0.1 mM</td>
+
     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O  (0.1 mM)</td>
-
     <td ALIGN=CENTER>0.1mL</td>
+
     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 117: Line 114:
<tr>
<tr>
     <td>0.1% glucose </td>
     <td>0.1% glucose </td>
-
     <td ALIGN=CENTER>0.5 mL</td>
+
     <td>0.5 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 125: Line 122:
-
<br><H5> MSgg medium (100 mL)</H5>
+
<br><H5 id="special"> MSgg Medium (100 ml)</H5>
-
<table id="normal">
+
<table id="normal" width="70%">
   <tr>
   <tr>
     <th>compound</th>
     <th>compound</th>
Line 135: Line 132:
   <tr>
   <tr>
     <td>KH<sub>2</sub>PO<sub>4</sub></td>
     <td>KH<sub>2</sub>PO<sub>4</sub></td>
-
     <td ALIGN=CENTER>0.026 g</td>
+
     <td>0.026 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
<tr>
<tr>
     <td>K<sub>2</sub>HPO<sub>4</sub></td>
     <td>K<sub>2</sub>HPO<sub>4</sub></td>
-
     <td ALIGN=CENTER>0.061 g</td>
+
     <td>0.061 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
   <tr>
   <tr>
-
     <td>MOPS 100 mM</td>
+
     <td>MOPS (100 mM)</td>
-
     <td ALIGN=CENTER>2.09 g</td>
+
     <td>2.09 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
   <tr>
   <tr>
-
     <td>MgCl<sub>2</sub>.6H<sub>2</sub>O  2 mM</td>
+
     <td>MgCl<sub>2</sub>.6H<sub>2</sub>O  (2 mM)</td>
-
     <td ALIGN=CENTER>0.04 g</td>
+
     <td>0.04 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 158: Line 155:
   <tr>
   <tr>
     <td>agar</td>
     <td>agar</td>
-
     <td ALIGN=CENTER>1.5 g</td>
+
     <td>1.5 g</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 164: Line 161:
<tr>
<tr>
     <td></td>
     <td></td>
-
     <td ALIGN=CENTER></td>
+
     <td></td>
     <td>add everything together and autoclave</td>
     <td>add everything together and autoclave</td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>CaCl<sub>2</sub>  700 mM</td>
+
     <td>CaCl<sub>2</sub>  (700 mM)</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>MnCl<sub>2</sub> 50 &micro;M</td>
+
     <td>MnCl<sub>2</sub> (50 &micro;M)</td>
-
     <td ALIGN=CENTER>50 &micro;L</td>
+
     <td>50 &micro;l</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>FeCl<sub>3</sub>  50 &micro;M</td>
+
     <td>FeCl<sub>3</sub>  (50 &micro;M)</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>ZnCl<sub>2</sub> 1 &micro;M</td>
+
     <td>ZnCl<sub>2</sub> (1 &micro;M)</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>thiamine 2 &micro;M</td>
+
     <td>thiamine (2 &micro;M)</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 200: Line 197:
<tr>
<tr>
     <td>0.5% glycerol </td>
     <td>0.5% glycerol </td>
-
     <td ALIGN=CENTER>0.57 mL</td>
+
     <td>0.57 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 206: Line 203:
<tr>
<tr>
     <td>0.5% glutamate </td>
     <td>0.5% glutamate </td>
-
     <td ALIGN=CENTER>10 mL</td>
+
     <td>10 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 212: Line 209:
<tr>
<tr>
     <td>tryptophan </td>
     <td>tryptophan </td>
-
     <td ALIGN=CENTER>1 mL</td>
+
     <td>1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 219: Line 216:
</p>
</p>
-
<br>Grow cells overnight in LB / glass tubes at 37&deg;C.
 
-
<br>Inoculate 2 &micro;L spot on plate dry 15 minutes at 30&deg;C
 
-
<br>Inoculate 30&deg;C 2-4 days
 

Latest revision as of 00:27, 5 October 2013

Make an overnight culture of the strains of interest in LB broth.
1 ml of the O/N culture is required for every 10 ml of Sgg medium (2x SG supplemented with 1% [wt/vol] glycerol).
This will be incubated at 27°C for 5 days.
Media for macrocolony formation
2x SG Medium (100 ml)
compound amount treatment
Nutrient broth (Difco) 1.6 g
KCl 0.2 g
MgSO4.7H2O 0.05 g
agar 1.5 g
add everything together and autoclave
Ca(NO3)2.4H2O (1 mM) 0.1 ml
MnCl2.4H2O (0.1 mM) 0.1 ml
FeSO4 (1 µM) 0.1 ml
0.1% glucose 0.5 ml

LB/Mn/Glucose Medium (100 ml)
compound amount treatment
LB 1.5% agar 100 ml autoclave
MnCl2.4H2O (0.1 mM) 0.1 ml
0.1% glucose 0.5 ml

MSgg Medium (100 ml)
compound amount treatment
KH2PO4 0.026 g
K2HPO4 0.061 g
MOPS (100 mM) 2.09 g
MgCl2.6H2O (2 mM) 0.04 g
agar 1.5 g
add everything together and autoclave
CaCl2 (700 mM) 0.1 ml
MnCl2 (50 µM) 50 µl
FeCl3 (50 µM) 0.1 ml
ZnCl2 (1 µM) 0.1 ml
thiamine (2 µM) 0.1 ml
0.5% glycerol 0.57 ml
0.5% glutamate 10 ml
tryptophan 1 ml