Team:Groningen/protocols/biofilm media

From 2013.igem.org

(Difference between revisions)
 
(7 intermediate revisions not shown)
Line 22: Line 22:
<div class="mainContent">
<div class="mainContent">
-
 
+
Make an overnight culture of the strains of interest in LB broth.
-
<br>Grow the strains overnight at 37°C on LB broth.  
+
<br>1 ml of the O/N culture is required for every 10 ml of Sgg medium (2x SG supplemented with 1% [wt/vol] glycerol).
-
<br>Use 1 ml of liquid culture for every 10 ml 2x Sgg medium to inoculate every 10 ml 2x Sgg.
+
<br>This will be incubated at 27&deg;C for 5 days.
-
<br>Iincubated at 27&deg;C for 5 days.
+
-
<br> Sgg is 2x SG supplemented with 1% [wt/vol] glycerol.
+
-
<br>
+
-
 
+
<h5>Media for macrocolony formation</h5>
<h5>Media for macrocolony formation</h5>
-
 
+
<H5 id="special">2x SG Medium (100 ml)</H5>
-
<br><H5>2x SG medium (100 mL)</H5>
+
<table id="normal" width="70%">
-
<table id="normal">
+
   <tr>
   <tr>
     <th>compound</th>
     <th>compound</th>
Line 42: Line 37:
   <tr>
   <tr>
     <td>Nutrient broth (Difco)</td>
     <td>Nutrient broth (Difco)</td>
-
     <td ALIGN=CENTER>1.6 g</td>
+
     <td>1.6 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 48: Line 43:
   <tr>
   <tr>
     <td>KCl</td>
     <td>KCl</td>
-
     <td ALIGN=CENTER>0.2 g</td>
+
     <td>0.2 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 54: Line 49:
   <tr>
   <tr>
     <td>MgSO<sub>4</sub>.7H<sub>2</sub>O </td>
     <td>MgSO<sub>4</sub>.7H<sub>2</sub>O </td>
-
     <td ALIGN=CENTER>0.05 g</td>
+
     <td>0.05 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 60: Line 55:
   <tr>
   <tr>
     <td>agar</td>
     <td>agar</td>
-
     <td ALIGN=CENTER>1.5 g</td>
+
     <td>1.5 g</td>
-
     <td> </td>
+
     <td></td>
   </tr>
   </tr>
<tr>
<tr>
     <td></td>
     <td></td>
-
     <td ALIGN=CENTER></td>
+
     <td></td>
     <td> add everything together and autoclave</td>
     <td> add everything together and autoclave</td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>Ca(NO<sub>3</sub>)<sub>2</sub>.4H<sub>2</sub>O  1 mM</td>
+
     <td>Ca(NO<sub>3</sub>)<sub>2</sub>.4H<sub>2</sub>O  (1 mM)</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 ml</td>
-
     <td> </td>
+
     <td></td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O 0.1 mM</td>
+
     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O (0.1 mM)</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>FeSO<sub>4</sub>  1 &micro;M</td>
+
     <td>FeSO<sub>4</sub>  (1 &micro;M)</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 ml</td>
-
     <td> </td>
+
     <td></td>
   </tr>
   </tr>
<tr>
<tr>
     <td>0.1% glucose </td>
     <td>0.1% glucose </td>
-
     <td ALIGN=CENTER>0.5 mL</td>
+
     <td>0.5 ml</td>
-
     <td> </td>
+
     <td></td>
   </tr>
   </tr>
</table>  
</table>  
Line 97: Line 92:
-
<br><H5>LB/Mn/glucose medium (100 mL)</H5>
+
<br><H5 id="special">LB/Mn/Glucose Medium (100 ml)</H5>
-
<table id="normal">
+
<table id="normal" width="70%">
   <tr>
   <tr>
     <th>compound</th>
     <th>compound</th>
Line 106: Line 101:
   <tr>
   <tr>
-
     <td>LB/ 1.5% agar</td>
+
     <td>LB 1.5% agar</td>
-
     <td ALIGN=CENTER>100 ml</td>
+
     <td>100 ml</td>
     <td>autoclave</td>
     <td>autoclave</td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O  0.1 mM</td>
+
     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O  (0.1 mM)</td>
-
     <td ALIGN=CENTER>0.1mL</td>
+
     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 119: Line 114:
<tr>
<tr>
     <td>0.1% glucose </td>
     <td>0.1% glucose </td>
-
     <td ALIGN=CENTER>0.5 mL</td>
+
     <td>0.5 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 127: Line 122:
-
<br><H5> MSgg medium (100 mL)</H5>
+
<br><H5 id="special"> MSgg Medium (100 ml)</H5>
-
<table id="normal">
+
<table id="normal" width="70%">
   <tr>
   <tr>
     <th>compound</th>
     <th>compound</th>
Line 137: Line 132:
   <tr>
   <tr>
     <td>KH<sub>2</sub>PO<sub>4</sub></td>
     <td>KH<sub>2</sub>PO<sub>4</sub></td>
-
     <td ALIGN=CENTER>0.026 g</td>
+
     <td>0.026 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
<tr>
<tr>
     <td>K<sub>2</sub>HPO<sub>4</sub></td>
     <td>K<sub>2</sub>HPO<sub>4</sub></td>
-
     <td ALIGN=CENTER>0.061 g</td>
+
     <td>0.061 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
   <tr>
   <tr>
-
     <td>MOPS 100 mM</td>
+
     <td>MOPS (100 mM)</td>
-
     <td ALIGN=CENTER>2.09 g</td>
+
     <td>2.09 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
   <tr>
   <tr>
-
     <td>MgCl<sub>2</sub>.6H<sub>2</sub>O  2 mM</td>
+
     <td>MgCl<sub>2</sub>.6H<sub>2</sub>O  (2 mM)</td>
-
     <td ALIGN=CENTER>0.04 g</td>
+
     <td>0.04 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 160: Line 155:
   <tr>
   <tr>
     <td>agar</td>
     <td>agar</td>
-
     <td ALIGN=CENTER>1.5 g</td>
+
     <td>1.5 g</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 166: Line 161:
<tr>
<tr>
     <td></td>
     <td></td>
-
     <td ALIGN=CENTER></td>
+
     <td></td>
     <td>add everything together and autoclave</td>
     <td>add everything together and autoclave</td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>CaCl<sub>2</sub>  700 mM</td>
+
     <td>CaCl<sub>2</sub>  (700 mM)</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>MnCl<sub>2</sub> 50 &micro;M</td>
+
     <td>MnCl<sub>2</sub> (50 &micro;M)</td>
-
     <td ALIGN=CENTER>50 &micro;L</td>
+
     <td>50 &micro;l</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>FeCl<sub>3</sub>  50 &micro;M</td>
+
     <td>FeCl<sub>3</sub>  (50 &micro;M)</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>ZnCl<sub>2</sub> 1 &micro;M</td>
+
     <td>ZnCl<sub>2</sub> (1 &micro;M)</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
-
     <td>thiamine 2 &micro;M</td>
+
     <td>thiamine (2 &micro;M)</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 202: Line 197:
<tr>
<tr>
     <td>0.5% glycerol </td>
     <td>0.5% glycerol </td>
-
     <td ALIGN=CENTER>0.57 mL</td>
+
     <td>0.57 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 208: Line 203:
<tr>
<tr>
     <td>0.5% glutamate </td>
     <td>0.5% glutamate </td>
-
     <td ALIGN=CENTER>10 mL</td>
+
     <td>10 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 214: Line 209:
<tr>
<tr>
     <td>tryptophan </td>
     <td>tryptophan </td>
-
     <td ALIGN=CENTER>1 mL</td>
+
     <td>1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>

Latest revision as of 00:27, 5 October 2013

Make an overnight culture of the strains of interest in LB broth.
1 ml of the O/N culture is required for every 10 ml of Sgg medium (2x SG supplemented with 1% [wt/vol] glycerol).
This will be incubated at 27°C for 5 days.
Media for macrocolony formation
2x SG Medium (100 ml)
compound amount treatment
Nutrient broth (Difco) 1.6 g
KCl 0.2 g
MgSO4.7H2O 0.05 g
agar 1.5 g
add everything together and autoclave
Ca(NO3)2.4H2O (1 mM) 0.1 ml
MnCl2.4H2O (0.1 mM) 0.1 ml
FeSO4 (1 µM) 0.1 ml
0.1% glucose 0.5 ml

LB/Mn/Glucose Medium (100 ml)
compound amount treatment
LB 1.5% agar 100 ml autoclave
MnCl2.4H2O (0.1 mM) 0.1 ml
0.1% glucose 0.5 ml

MSgg Medium (100 ml)
compound amount treatment
KH2PO4 0.026 g
K2HPO4 0.061 g
MOPS (100 mM) 2.09 g
MgCl2.6H2O (2 mM) 0.04 g
agar 1.5 g
add everything together and autoclave
CaCl2 (700 mM) 0.1 ml
MnCl2 (50 µM) 50 µl
FeCl3 (50 µM) 0.1 ml
ZnCl2 (1 µM) 0.1 ml
thiamine (2 µM) 0.1 ml
0.5% glycerol 0.57 ml
0.5% glutamate 10 ml
tryptophan 1 ml