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Yuxiang Li
Yuxiang Li is a postgraduate of USAS, majoring in bioengineering. He is responsible for constructing the data structure, designing CRISPR site, enzyme modification and codon optimization in Genovo project.
Team:Shenzhen BGIC 0101/Team
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Revision as of 01:42, 28 October 2013
Consortium
Shenzhen_BGIC_0101 is a union team:
6 universities
– UCAS, SCUT, UESTC, SCNU, SCU and HUST
9 members
– 2 postgraduates and 7 undergraduates
– They are all co-culture students between BGI college and their home universities.
Members
Postgraduate
Xinming Liang
Liang is a postgraduate in UCAS, majoring in Bioengineering. Everyone calls him "Xiao ming". He loves badminton, orienteering, swimming and other outdoor sports. In addition, he also is a HD movie fan.
Undergraduate
Jianhui Gong
Gong just graduated from his college SCUT and now works for BGI as a synthetic biology-bioinformatics analyst. He is a crazy SBer and is responsible for chromosome segmentation.
Xujia Lu
Xujia is from UESTC
Yincheng Li
Li is an undergraduate from SCNU, specializing in Information and Computer Science. He focus on the pathway processing. He enjoys the project and the teamwork.
Chao Zhang
Czh is a student from UESTC, he is insteresting in bioinformatics and web technology. In his spare time, he enjoy playing e-sports (DOTA) with his little buddies.
Wenzhuo Zeng
Wenzhuo or Table is an undergraduate student in SCNU, majoring in Software Engineering. She is responsible for the pathway drawing of Genovo and she has passion for doing such significant software.
Boxian Lai
Boxian lai is student form South China Normal University, major in computer sciences. He is responsible for designing oligonucleotides and primers for synthesis on a chip.His interest is play computer program and mine information form bio_data.
Zeyun Hu
Huzeyun is a student from Sichuan university, major in biotechnology, his is also a parter of Innovation Class of BGI. His hobby is play for the belife "life is a charming game, we should go all out."
Instructor & advisor
Huanming YANG
Yun WANG
Yue SHEN
Yu CHEN
Kang KANG
Attribution
1. Jianhui Gong designed most of the projects.
2. Xujia Lu covers graphical user interface and software framework of Genovo and also the drag & drop operation method.
3. Xinming Liang, Yuxiang Li and Jianhui Gong cover programming for chromosome structure constructing, nucleotide sequence editing and chromosome segmentation for assembly respectively.
4. Chao Zhang covers wiki establishment.
5. Yincheng Li covers BioStudio installation and debugging.
6. Wenzhuo Zeng covers kgml parsing and presentation.
7. Boxian Lai covers linking segmentation with OLS method for synthesizing DNA.
8. Zeyun Hu covers database collecting.
Support
1. Financial support:
BGI College, it paid team & attendance registration fee, travel allowance and accommodation fee for us.
2. Workplace & desktop & test environment provider:
BGI, Shenzhen, it provided us enough room to discuss, work together, organize meetings and also at least 7 desktops. BGI also allowed us to test our plug-ins and program on mainframe.
3. Server support:
Dr. Huixiong Li from UESTC and Liping Yang from BGI assisted us to establish web-server.
4. Software design guidance:
Mr. Yun Wang assisted us to design the third module SegmMan, assembly from 2k minichunks to 10k chunks, and then to 30k megachunks.
Dr. Patrick Yizhi Cai pointed out some errors of design principle, especially in the homologous recombination from 30k megachunks to whole chromosome.
5. Software based framework provider:
Jbrowse & Gbrowse from GMOD.
GeneDesign & BioStudio from Dr. Sarah Richardson of John Hopkins University.
GASP from Dr. Eroshenko from Harvard School of Engineering and Applied
Sciences
Some nameless frameworks from D3 library and KEGG.
6. Team shirt design support:
Mr. Kang Kang helped us to design two types of shirts, one for team members, one for advertising and sales.
