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Team:Exeter/Project
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== The Biology == | == The Biology == | ||
| - | The focus of our wet work is the creation of three | + | The focus of our wet work is the creation of three independent 'light to output' pathways in E. coli. Each pathway will control the transcription of selected genes using Red, Green or Blue light. Incident light will prevent the transcription of the selected gene. |
In our bio-camera the controlled genes will be those that code for the production of cyan, magenta and yellow pigments: | In our bio-camera the controlled genes will be those that code for the production of cyan, magenta and yellow pigments: | ||
| - | * Red light prevents the production of cyan pigment | + | * Red light prevents the production of cyan pigment |
| - | * Green light prevents the production of magenta pigment | + | * Green light prevents the production of magenta pigment (show the not gates diagram here - from the presentation) |
* Blue light prevents the production of Yellow pigment | * Blue light prevents the production of Yellow pigment | ||
| - | Each sensor prevents the production of | + | Each sensor prevents the production of its opposing pigment, producing the pigment which is the same colour of light that the light sensor detects. The mix of pigments will reproduce the colour of light incident on the bacteria. |
=== Red light pathway === | === Red light pathway === | ||
| - | This pathway uses Cph8 red light sensor (composing of Cph1 and Envz) which acts to phosphorylate OmpR to OmpRp in the absence of red light. OmpRp then binds to the OmpF promoter upstream of the HO-pcyA gene which codes for cyan pigment, and stop codon. This | + | This pathway uses the well characterised Cph8 red light sensor (composing of Cph1 and Envz) which acts to phosphorylate OmpR to OmpRp in the absence of red light. OmpRp then binds to the OmpF promoter upstream of the HO-pcyA gene which codes for cyan pigment, and stop codon. This is then transcribed and cyan pigment protein produced. |
| - | + | ||
| - | is then transcribed and cyan pigment protein produced. | + | |
=== Green light pathway === | === Green light pathway === | ||
Revision as of 13:45, 17 July 2013
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Contents |
Introduction
Our project aims to produce a Red, Green and Blue ([http://en.wikipedia.org/wiki/Additive_color RGB]) light control brick for E. coli. To demonstrate the system we will control the production of Cyan, Magenta and Yellow ([http://en.wikipedia.org/wiki/Subtractive_color CMY]) pigments to produce the world's first colour bio-photograph or [http://parts.igem.org/Coliroid coliroid].
We will be building upon the work done by previous iGEM teams, most notably Texas/Austin 2004, Edinburgh 2010 and Uppsala 2011.
The Camera
Bio-Photography is the application of genetically engineered bacteria as the light sensor of a camera, replacing digital sensors (CCD/CMOS) or photographic film. The surface area of bacteria is on the order of microns, much smaller than a digital sensor. This gives bio-cameras the potential to produce images with far greater resolution.
We aim to produce the world's first colour bio-photograph by producing Cyan, Magenta and Yellow pigments in response to Red, Green and Blue light. We plan to combine this system with a lens to focus the image onto plated bacteria to form the world's first colour bio-camera.
Colour system
To produce the full colour spectrum requires all three [http://en.wikipedia.org/wiki/Primary_color primary colours]. This is because any colour can be produced by mixing the primary colours but primary colours cannot be produced by mixing any colours.
In our system we are using two sets of primary colours. Red, Green and Blue for light and Cyan, Magenta and Yellow for pigments. This is because light and pigment mix differently; light is additive and pigment is subtractive:
Light and pigment produce colour in different ways. While coloured light has a peak wavelength corrosponding to its colour, coloured pigment absorbs all wavelengths that do not correspond to its colour and so reflect the corrosponding coloured light:
In this system Red is the opposite of cyan, green opposite magenta and blue opposite yellow. Hence our choice of sensors and pigments.
It must be noted that while [http://en.wikipedia.org/wiki/RGB_color_model RGB] light give a full spectrum of colour and tone. CMY is a simplified version of the CYMK colour system used in printing. This was done because to engineer the pathways for[http://en.wikipedia.org/wiki/CMYK_color_model CYMK] colour system outputs is too complex. however as CMY is subtractive there will be tone as Cyan + Magenta and Yellow will approximate black.
The Biology
The focus of our wet work is the creation of three independent 'light to output' pathways in E. coli. Each pathway will control the transcription of selected genes using Red, Green or Blue light. Incident light will prevent the transcription of the selected gene.
In our bio-camera the controlled genes will be those that code for the production of cyan, magenta and yellow pigments:
- Red light prevents the production of cyan pigment
- Green light prevents the production of magenta pigment (show the not gates diagram here - from the presentation)
- Blue light prevents the production of Yellow pigment
Each sensor prevents the production of its opposing pigment, producing the pigment which is the same colour of light that the light sensor detects. The mix of pigments will reproduce the colour of light incident on the bacteria.
Red light pathway
This pathway uses the well characterised Cph8 red light sensor (composing of Cph1 and Envz) which acts to phosphorylate OmpR to OmpRp in the absence of red light. OmpRp then binds to the OmpF promoter upstream of the HO-pcyA gene which codes for cyan pigment, and stop codon. This is then transcribed and cyan pigment protein produced.
Green light pathway
The CcaS green light sensor phosphorylates CcaR to CcaRp in the presence of green light. CcaRp binds to a promoter upstream of a gene that codes for cl repressor protein. The cl protein binds to the promoter upstream of the magenta pigment gene and stop codon. This prevents transcription and stops production of the magenta pigment pigment.
Blue light pathway
The YtvA/FixL blue light sensor phosphorylates FixJ to Fixjp in the absence of blue light. FixJp then binds to the promoter for the Yellow pigment gene and stop codon. So in the absence of blue light the Yellow pigment is produced.
The future
Our project aims to provide a foundation for the control of organisms using multiple wavelengths of light for future development. Using lasers to control bacteria will provide high spatial control while a well characterised system will provide good temporal control. This technology has many implications for the future.
