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Team:Shenzhen BGIC 0101/Software
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Revision as of 09:43, 28 October 2013
Overview：Genome Design Suite
Genovo is a Computer-Aided Design（CAD） suite to assist users to create new system denovo.
We developed its GUI & multiple functions basing upon JBrowse, a genome browse with a fully dynamic AJAX interface, which is included in GMOD in the CLOUD toolset.
It sets us free in the laborious, complex creating procedure, including choosing genes of new system (here the system refers to new pathways which is in form of a chromosome), changing chromosome’s structure, editing coding DNA sequence, splitting the chromosome into equipped fragments for synthesis and assembly.
Genovo’s UI is mainly developed on a genome browser, Jbrowse interface Functionally, Genovo is partially based on GeneDesign algorithm suite, and BioStudio development environment under SC2.0 project, but it has great extensions.
