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| | + | {{:Team:Shenzhen BGIC 0101/Templates/Header}} |
| | <html> | | <html> |
| - | <head>
| + | <body> |
| - | <!-- iGem wiki hacks -->
| + | <br/> |
| - | <!-- Remove all empty <p> tags -->
| + | <h1>Overview：Genome Design Suite</h1> |
| - | <script type="text/javascript">
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| - | $(document).ready(function() {
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| - | $("p").filter( function() {
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| - | return $.trim($(this).html()) == '';
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| - | }).remove();
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| - | });
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| - | </script>
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| - | | + | |
| - | <!-- Remove "team" from the menubar -->
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| - | <script type="text/javascript">
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| - | $(document).ready(function() {
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| - | $("menubar > ul > li:last-child").remove();
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| - | });
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| - | </script>
| + | |
| - | | + | |
| - | <!-- Empty heading? - Then remove it.. -->
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| - | <script type="text/javascript">
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| - | $(document).ready(function() {
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| - | if ("" == "</html>{{{1}}}<html>") {
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| - | $("#heading").remove();
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| - | }
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| - | });
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| - | </script>
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| - | <script type="text/javascript">
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| - | $(document).ready(function() {
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| - | // document.getElementById("p-logo").style.display= "none";
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| - | document.getElementsByClassName("right-menu noprint")[0].style.display= "none";
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| - | //document.getElementById("searchform").style.display= "none";
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| - | </script>
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| - | <link rel="stylesheet" href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/css?action=raw&ctype=text/css" type="text/css" />
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| - | <link rel="stylesheet" href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/style?action=raw&ctype=text/css" type="text/css" />
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| - | <script src="http://code.jquery.com/jquery-1.7.2.min.js"></script>
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| - | <script type="text/javascript" src="https://2013.igem.org/Team:Shenzhen_BGIC_0101/easying?action=raw&ctype=text/javascript"></script>
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| - | <script type="text/javascript" src="//use.typekit.net/jlr8wlp.js"></script>
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| - | <script type="text/javascript">try{Typekit.load();}catch(e){}</script>
| + | |
| - | <script type="text/javascript">
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| - | function FloatMenu(){
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| - | var animationSpeed=1500;
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| - | var animationEasing='easeOutQuint';
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| - | var scrollAmount=$(document).scrollTop();
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| - | var newPosition=menuPosition+scrollAmount;
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| - | if($(window).height()<$('#fl_menu').height()+$('#fl_menu .menu').height()){
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| - | $('#fl_menu').css('top',menuPosition);
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| - | } else {
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| - | $('#fl_menu').stop().animate({top: newPosition}, animationSpeed, animationEasing);
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| - | }
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| - | }
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| - | $(window).load(function(){
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| - | menuPosition=$('#fl_menu').position().top;
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| - | FloatMenu();
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| - | });
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| - | $(window).scroll(function(){
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| - | FloatMenu();
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| - | });
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| - | $(document).ready(function(){
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| - | var fadeSpeed=500;
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| - | $("#fl_menu").hover(function(){
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| - | $('#fl_menu .label').fadeTo(fadeSpeed, 1);
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| - | $("#fl_menu .menu").fadeIn(fadeSpeed);
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| - | },function(){
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| - | $('#fl_menu .label').fadeTo(fadeSpeed, 0.75);
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| - | $("#fl_menu .menu").fadeOut(fadeSpeed);
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| - | });
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| - | </script>
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| - | <style>
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| - | .container{
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| - | width:65%;
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| - | left: 5%;
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| - | }
| + | |
| - | /* fl_menu */
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| - | #fl_menu{position:absolute;top:150px;left:-2px;z-index:9999;
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| - | width:200px;
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| - | height:50px;
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| - | }
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| - | #fl_menu .label{line-height:50px;font-size:18px;font-weight:bold;background: #1B1B1B;color:#fff;letter-spacing:5px;text-align: center;box-shadow: 2px 1px 6px #272727;border-radius: 2px;opacity: 0.75;}
| + | |
| - | #fl_menu .label a{color:#83f;text-decoration: none;}
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| - | #fl_menu .label a:hover{color:#38f;}
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| - | | + | |
| - | </style>
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| - | <!--[if lt IE 9]><script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script><![endif]-->
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| - | <style type="text/css">.recentcomments a{display:inline !important;padding:0 !important;margin:0 !important;}</style>
| + | |
| - | | + | |
| - | </head>
| + | |
| - | <body class="blog developer-wanted"> | + | |
| - | <div id="fl_menu"> | + | |
| - | <div class="label"><a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Software#">Overview</a></div>
| + | |
| - | <div class="label"><a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Modules">Modules</a></div> | + | |
| - | <div class="label"><a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Next_version">Next version</a></div>
| + | |
| - | <div class="label"><a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Compatibility">Compatibility</a></div>
| + | |
| - | <div class="label"><a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/NewStandard">New Standard</a></div>
| + | |
| - | <div class="label"><a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Web-based_trial">Web-based trial</a></div>
| + | |
| - | | + | |
| - | <div class="label"><a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Software_Assessment">Assessment</a></div>
| + | |
| - | <div class="label"><a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Downloadsl">Downloads</a></div>
| + | |
| - | | + | |
| - | | + | |
| - | </div>
| + | |
| - | <div id="wrap" style="background:url(https://static.igem.org/mediawiki/igem.org/f/fb/Backgd.jpg);">
| + | |
| - | <header class="light">
| + | |
| - | <a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Home" id="logo">logo</a>
| + | |
| | | | |
| - | <nav class="menu-main-navigation-container"><a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Home" class="menu-item-20 menu-item menu-item-type-post_type menu-item-object-page">Home</a> <a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Team" class="menu-item-19 menu-item menu-item-type-post_type menu-item-object-page">Team</a> <a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Software" class="menu-item-18 menu-item menu-item-type-post_type menu-item-object-page current-menu-item">Software</a> <a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Requirements" class="menu-item-17 menu-item menu-item-type-post_type menu-item-object-page">Requirements</a> <a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/HumanPractices" class="menu-item-15 menu-item menu-item-type-post_type menu-item-object-page">Human Practices</a> </nav>
| + | <p>Genovo is a <b>Computer-Aided Design（CAD） suite</b> to assist users to create new system denovo.</p> |
| - | <a href="https://2013.igem.org/Main_Page" id="logo1">logo</a>
| + | <br/> |
| - | </header> | + | |
| | | | |
| - | | + | <p> |
| - | <div id="page-header" style="background: url(https://static.igem.org/mediawiki/igem.org/b/b0/Za.jpg);height: 300px;box-shadow: 4px 3px 25px #000;"> | + | It sets us free in the laborious, complex creating procedure, including choosing genes of new system (here the system refers to new pathways which is in form of a chromosome), changing chromosome’s structure, editing coding DNA sequence, splitting the chromosome into equipped fragments for synthesis and assembly. |
| - | <h1></h1>
| + | <br/><br/> |
| - | </div>
| + | Genovo’s UI is mainly developed on a genome browser, <a href="http://www.gmod.org/wiki/JBrowse">Jbrowse</a> interface<br/> |
| | + | <img src="https://static.igem.org/mediawiki/2013/8/82/Genovoui.png" width=850px /> |
| | <br/> | | <br/> |
| - | <a name="overview"></a> | + | <br/><br/> |
| - | <section id="blog" class="container"> | + | Functionally, Genovo is partially based on <a href=" http://54.235.254.95/gd/"> GeneDesign</a> algorithm suite, and BioStudio development environment under < a href=" http://syntheticyeast.org/" >SC2.0 project</a>, but it has great extensions. |
| | + | </p> |
| | | | |
| - | <article class="clearfix" style="background: rgba(29, 28, 28, 0.79);">
| |
| - | <div id="post-1815" class="post-1815 post type-post status-publish format-standard hentry category-evolution" style="background: transparent;color: #E6E6E6;">
| |
| - | <img width="1000" height="315" src="https://static.igem.org/mediawiki/2013/0/00/Test-main.png" class="attachment-blog-thumb wp-post-image" /> <div class="text">
| |
| - | <h2>Genovo</h2>
| |
| - |
| |
| - | <div class="post-content" style="color: #ADFFCF;"><hr/><p>Genovo is a Computer-Aided Design (CAD) tool used for denovo design of genome. The current version consists of 4 parts. </p>
| |
| - | <p>The first, Chromosome Construction will grap genes in a common pathway and chromosome features to build a new genome and let user to define the order and orientation in drap-drop way. The second, Nucleotide Modification will optimize and soften the sequence of CDSs. It also help design the CRIPSR sites so that we can silence the wild type genes. The third, Chromosome Segmentation will cut chromosome into pieces and add 3A & Gibson & Goldengate & Homologous Recombination adaptors to the pieces automatically for assembly. The last one, OLS Design will guide users to gain the chromosome by microarray. </p>
| |
| - | <p>Genovo will enable user to design their innovative chromosome as their wishes and further the research on genome on pathway level.</p>
| |
| | <br/><br/> | | <br/><br/> |
| - | <h2>Plug-in</h2>
| + | <hr style="color:#7380AE; height:2px;" /> |
| - | <hr/> | + | |
| - | <a name="plug-in"></a>
| + | |
| - | <a name="plug1"></a>
| + | |
| - | <p>plug-in 1</p>
| + | |
| - | <p>test test</p><hr/>
| + | |
| - | <a name="plug2"></a>
| + | |
| - | <p>plug-in 2</p>
| + | |
| - | <p>test test</p><hr/>
| + | |
| - | <a name="plug3"></a>
| + | |
| - | <p>plug-in 3</p>
| + | |
| - | <p>test test</p><hr/>
| + | |
| - | <a name="plug4"></a>
| + | |
| - | <p>plug-in 4</p>
| + | |
| - | <p>test test</p><hr/>
| + | |
| - | </div>
| + | |
| - | </div>
| + | |
| - |
| + | |
| - | </div>
| + | |
| - |
| + | |
| - | </article>
| + | |
| - |
| + | |
| - | </section>
| + | |
| - | <a name="tutorial"></a>
| + | |
| - | <section id="blog" class="container">
| + | |
| - |
| + | |
| - | <article class="clearfix" style="background: rgba(29, 28, 28, 0.79);">
| + | |
| - | <div id="post-1815" class="post-1815 post type-post status-publish format-standard hentry category-evolution" style="background: transparent;color: #E6E6E6;">
| + | |
| - | <div class="text">
| + | |
| - | <h2>Tutorial</h2>
| + | |
| - |
| + | |
| - | <div class="post-content" style="color: #ADFFCF;"><hr/><p>test</p>
| + | |
| - | </div>
| + | |
| - | </div>
| + | |
| - |
| + | |
| - | </div>
| + | |
| - |
| + | |
| - | </article>
| + | |
| - |
| + | |
| - | </section>
| + | |
| - | <div class="push"></div>
| + | |
| - | </div><!-- wrapper -->
| + | |
| - | <footer style>
| + | |
| - | <div class="container clearfix">
| + | |
| - | <div class="seven columns" id="footer-contact">
| + | |
| - | <h3>contact us</h3>
| + | |
| - | <p>BGI-Shenzhen, Beishan Industrial Zone<br />
| + | |
| - | Yantian District, Shenzhen, 518083, China</p>
| + | |
| - | <p> <span>email:</span><br />
| + | |
| - | <a href="mailto:gongjianhui@genomics.com">gongjianhui@genomics.com</a></p>
| + | |
| - | </div>
| + | |
| - | <div class="four columns" id="footer-project">
| + | |
| - | <h3>sponsor</h3>
| + | |
| - | <p>BGIC<br/></p>
| + | |
| - | </div>
| + | |
| - | <div class="five columns" id="footer-newsletter">
| + | |
| - | <a href="https://2013.igem.org/Main_Page" ><img width="150" height="120" src="https://static.igem.org/mediawiki/2013/0/02/TB_IGEM_official_logo.png" /></a>
| + | |
| - | </div>
| + | |
| - | </div>
| + | |
| - | </footer>
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| - | <script src="https://2013.igem.org/Team:Shenzhen_BGIC_0101/aaa?action=raw&ctype=text/javascript"></script>
| + | |
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| | | | |
| | </body> | | </body> |
| | </html> | | </html> |
It sets us free in the laborious, complex creating procedure, including choosing genes of new system (here the system refers to new pathways which is in form of a chromosome), changing chromosome’s structure, editing coding DNA sequence, splitting the chromosome into equipped fragments for synthesis and assembly.
Genovo’s UI is mainly developed on a genome browser, Jbrowse interface
Functionally, Genovo is partially based on GeneDesign algorithm suite, and BioStudio development environment under SC2.0 project, but it has great extensions.
"
