Team:UCSF

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Thanks a lot to the 2011 Brown-Stanford and 2012 Lethbridge iGEM teams for snippets of their code!
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https://2011.igem.org/Team:Brown-Stanford
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https://2012.igem.org/Team:Lethbridge
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<h2><center>Operation CRISPR: Deploying precision guided tools to target unique species in a complex microbiome</h2></center> <p>
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In microbial communities, bacterial populations are commonly controlled using indiscriminate, broad range antibiotics. There are few ways to target specific strains effectively without disrupting the entire microbiome and local environment. The goal of our project is to take advantage of a natural horizontal gene transfer mechanism in bacteria to precisely affect gene expression in selected strains. We combine bacterial conjugation with CRISPRi, an RNAi-like repression system developed from bacteria, to regulate gene expression in targeted strains within a complex microbial community. One possible application is to selectively repress pathogenic genes in a microbiome, leaving the community makeup unaffected. In addition, we use CRISPRi to lay the groundwork for transferring large circuits that enable complex functionality and decision-making in cells. </p>
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You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2009.igem.org/Help:Template/Examples">HERE</a>.
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You <strong>MUST</strong> have all of the pages listed in the menu below with the names specified. PLEASE keep all of your pages within your teams namespace. 
 
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                    <div><a href="https://2013.igem.org/Team:UCSF/About_Us">
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<img src="https://static.igem.org/mediawiki/2013/2/29/2013UCSF_MainBox_Team.jpg" class="blur"></a>
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                    <a href="https://2013.igem.org/Team:UCSF/About_Us"><h3>Team</h3></a>
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                    <p>Meet our dedicated team of under-graduates who conceived of, planned, and carried out the whole project.</p></a>
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              </td>
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              <a href="https://2013.igem.org/Team:UCSF/Project/Background"><img src="https://static.igem.org/mediawiki/2013/c/c2/UCSF2013_MainBox_Project-1.jpg" class="blur"></a>
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              <a href="https://2013.igem.org/Team:UCSF/Project/Background"><h3>Project</h3></a>
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                    <p>Discover our precision guided tools to target unique species in a complex microbiome and our groundwork for transferring large circuits that enable complex functionality and decision-making in cells.</p>           
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                    <a href="https://2013.igem.org/Team:UCSF/Modeling">
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<img src="https://static.igem.org/mediawiki/2013/a/af/UCSF2013_MainBox_Modeling-1.jpg" class="blur" />
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<!--img src="https://static.igem.org/mediawiki/2013/9/97/UCD_2013_HO_Button.jpg" class="blur"--></a>
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                    <a href="https://2013.igem.org/Team:UCSF/Modeling"><h3>Modeling</h3></a>
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                    <p>Take a look at how we use mathematical modeling to facilitate the design and construct of our project.                    </p>
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              <a href="https://2013.igem.org/Team:UCSF/Exploratorium"><img src="https://static.igem.org/mediawiki/2013/7/7c/UCSF2013_MainBox_HP.jpg" class="blur"</a>
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              <a href="https://2013.igem.org/Team:UCSF/Exploratorium"><h3>Human Practice</h3></a>
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                    <p>Examine how we teach Synthetic Biology to the general public through night event at Exploratorium and to high school students through a collaboration with Lincoln High School.</p>
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              </td>   
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{|align="justify"
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|You can write a background of your team here.  Give us a background of your team, the members, etc.  Or tell us more about something of your choosing.
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|[[Image:UCSF_logo.png|200px|right|frame]]
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''Tell us more about your project.  Give us background.  Use this as the abstract of your project.  Be descriptive but concise (1-2 paragraphs)''
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|[[Image:UCSF_team.png|right|frame|Your team picture]]
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|align="center"|[[Team:UCSF | Team UCSF]]
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<!--Sponsors-->
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!align="center"|[[Team:UCSF|Home]]
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!align="center"|[[Team:UCSF/Team|Team]]
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!align="center"|[https://igem.org/Team.cgi?year=2013&team_name=UCSF Official Team Profile]
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<h2><center>Special Thanks to Our 2013 iGEM Team Sponsors!</h2></center>
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!align="center"|[[Team:UCSF/Project|Project]]
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<center><img style="margin-top:20px; width: 500px; padding:5;"src="https://dl.dropbox.com/u/24404809/iGEM%202012/igem%202012%20website%20photos/Logos/2012%20Sponsors.jpg" usemap="#sponsor">
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!align="center"|[[Team:UCSF/Parts|Parts Submitted to the Registry]]
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!align="center"|[[Team:UCSF/Modeling|Modeling]]
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!align="center"|[[Team:UCSF/Notebook|Notebook]]
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!align="center"|[[Team:UCSF/Attributions|Attributions]]
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Latest revision as of 16:41, 28 October 2013

UCSF Home

UCSF iGEM 2013 Group Photo
Brainstorming project ideas during our second week of Bootcamp
Presenting a poster at the UCSF Center for Systems and Synthetic Biology retreat
Having a skype meeting with one of our mentors!
Human Practices: Speaking about Synthetic Biology at the SF Exploratorium
Having fun outside of the lab making ice cream with dry ice

Operation CRISPR: Deploying precision guided tools to target unique species in a complex microbiome

In microbial communities, bacterial populations are commonly controlled using indiscriminate, broad range antibiotics. There are few ways to target specific strains effectively without disrupting the entire microbiome and local environment. The goal of our project is to take advantage of a natural horizontal gene transfer mechanism in bacteria to precisely affect gene expression in selected strains. We combine bacterial conjugation with CRISPRi, an RNAi-like repression system developed from bacteria, to regulate gene expression in targeted strains within a complex microbial community. One possible application is to selectively repress pathogenic genes in a microbiome, leaving the community makeup unaffected. In addition, we use CRISPRi to lay the groundwork for transferring large circuits that enable complex functionality and decision-making in cells.


Team

Meet our dedicated team of under-graduates who conceived of, planned, and carried out the whole project.

Project

Discover our precision guided tools to target unique species in a complex microbiome and our groundwork for transferring large circuits that enable complex functionality and decision-making in cells.

Modeling

Take a look at how we use mathematical modeling to facilitate the design and construct of our project.

Human Practice

Examine how we teach Synthetic Biology to the general public through night event at Exploratorium and to high school students through a collaboration with Lincoln High School.

Special Thanks to Our 2013 iGEM Team Sponsors!


Retrieved from "http://2013.igem.org/Team:UCSF"