Team:Berkeley/Notebooks

From 2013.igem.org

(Difference between revisions)
 
(33 intermediate revisions not shown)
Line 1: Line 1:
{{Team:Berkeley/header}}
{{Team:Berkeley/header}}
-
{{Team:Berkeley/navigation}}
+
<html>
-
{{Team:Berkeley/css1}}
+
-
<html xmlns="http://www.w3.org/1999/xhtml">
+
<body data-spy="scroll" data-target="#navbar">
-
+
        <div id="navbar">
-
<div id="fb-root"></div>
+
            <ul class="nav">
 +
                <li id="TitleID"> <a id=TitleID href="https://2013.igem.org/Team:Berkeley/Notebooks">Lab Notebooks</a>  
 +
                </li>
 +
                <li><a href="#1">Bernie</a></li>
 +
                <li><a href="#2">Hojae</a></li>
 +
                <li><a href="#3">Roy</a></li>
 +
                <li><a href="#4">Ramya</a></li>
 +
                <li><a href="#5">Thomas</a></li>         
 +
            </ul>
 +
        </div>
 +
        <div id="inner-content">
 +
            <div class="heading-large"><a>Notebooks</a>
 +
            </div>
 +
         
 +
<div id="1">
 +
<div class = "heading"><a>Bernardo Cervantes' Notebook</a></div>
 +
-
<link rel="stylesheet" href="https://2012.igem.org/Template:Team:Berkeley/nivocss?action=raw&ctype=text/css" type="text/css"/>
+
<a target="_new" href="https://static.igem.org/mediawiki/2013/5/56/B.Cervantes-Notebook.pdf"><img src="http://www.downsizetothrive.com/books_transparent.gif" width="200px"/></a>
-
<script type="text/javascript" src="http://ajax.googleapis.com/ajax/libs/jquery/1.3.2/jquery.min.js"></script>
+
-
<script type="text/javascript" src="https://2012.igem.org/Template:Team:Berkeley/javascript/javanivoslider?action=raw&ctype=text/javascript"></script>
+
-
</script>
+
-
<script>
 
-
$("#slideshow > div:gt(0)").hide();
 
-
setInterval(function() {
 
-
  $('#slideshow > div:first')
 
-
    .fadeOut(1000)
 
-
    .next()
 
-
    .fadeIn(1000)
 
-
    .end()
 
-
    .appendTo('#slideshow');
 
-
},  3000);
 
-
</script>
 
-
<div class="row">
 
-
<div class="col12" id="spacer4" >
 
-
<div class="col12" id="spacer4">
 
-
</div>
 
-
<img src="https://static.igem.org/mediawiki/2012/3/37/Home_header1.jpg" width="980">
 
-
</div>
 
-
<div class="row">
 
-
<div class="col12" id="spacer2"></div>
 
-
<div class="row-end"> </div>
 
-
</div>
 
 +
    </div>
 +
   
 +
    <div id="2">
 +
<div class = "heading"><a>Hojae Lee's Notebook</a></div>
 +
 +
                   
 +
<a target="_new" href="https://static.igem.org/mediawiki/2013/b/b8/Hojae%27s_Lab_Notebook.pdf"><img src="http://www.downsizetothrive.com/books_transparent.gif" width="200px"/></a>
-
<div class="row">
+
    </div>
-
<div class="col6" align="justify" >
+
    <div id="3">
-
<p>
+
<div class = "heading"><a>Roy Park's Notebook</a></div>
-
Many applications in synthetic biology demand precise control over subcellular localization, cell morphology, motility, and other such phenotypes that are only observable via microscopy. At present, engineering these properties is challenging due in large part to the inherent throughput limitation imposed by microscopy. We have developed a strategy that enables high-throughput library screening with microscopy by coupling a unique fluorescence signature with each genotype present in a library. These MiCodes (microscopy barcodes) are generated by targeting combinations of fluorophores to several organelles within yeast, and they eliminate the need to isolate and observe clonal populations separately. MiCodes can potentially scale to library sizes of 10^6 or more, and their analysis can be largely automated using existing image processing software. As a proof of principle, we applied MiCodes to the problem of finding unique pairs of protein-protein interaction parts.
+
-
<br>
+
<a target="_new" href="https://static.igem.org/mediawiki/2013/4/48/Roy_Notebook.pdf"><img src="http://www.downsizetothrive.com/books_transparent.gif" width="200px"/>
-
<br>
+
                 
-
<p>
+
-
To learn more, visit the <a href="https://2012.igem.org/Team:Berkeley/Project">Project subpage</a> or jump straight to the section that interests you via the boxes below.  
+
-
</p>
+
 +
   
 +
    <div id="4">
 +
<div class = "heading"><a>Ramya Prathuri's Notebook</a></div>
 +
<a target="_new" href="https://static.igem.org/mediawiki/2013/6/6f/Ramya_Prathuris_Notebook.pdf"><img src="http://www.downsizetothrive.com/books_transparent.gif" width="200px"/></a>
 +
               
 +
    </div>
 +
    <div id="5">
 +
<div class = "heading"><a>Thomas Rich's Notebook</a></div>
 +
<a target="_new" href="https://static.igem.org/mediawiki/igem.org/1/19/Thomas_iGEM2013notebook.pdf"><img src="http://www.downsizetothrive.com/books_transparent.gif" width="200px"/></a>
 +
               
-
<br>
 
-
<div class="fb-like" data-href="https://www.facebook.com/pages/UC-Berkeley-iGEM-2012/196465580443607" data-send="true" data-width="450" data-show-faces="true"></div>
 
-
 
-
</div>
 
-
<div id = "spacer4">
 
-
</div>
 
-
<div class="col6" align="right">
 
-
<div class="slider-wrapper theme-default">
 
-
            <div class="ribbon"></div>
 
-
            <div id="slider" class="nivoSlider">
 
-
                <img src="https://static.igem.org/mediawiki/2012/c/ce/Slideshow1.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/e/ea/Slideshow2.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/d/db/Slideshow3.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/d/db/Slideshow4.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/d/d0/Slideshow5.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/2/2c/Slideshow6.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/f/f5/Slideshow7.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/0/0d/Slideshow8.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/3/39/Slideshow9.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/b/b2/Slideshow10.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/9/94/Slideshow11.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/2/28/Slideshow12.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/9/9b/Slideshow13.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/b/b5/Slideshow14.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/7/71/Slideshow15.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/c/cc/Slideshow16.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/1/17/Slideshow17.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/1/17/Slideshow18.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/a/aa/Slideshow19.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/e/e2/Slideshow20.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/6/65/Slideshow21.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/2/2d/Slideshow22.jpg"/>
 
-
                <img src="https://static.igem.org/mediawiki/2012/3/34/Slideshow23.jpg"/>
 
-
          </div>
 
     </div>
     </div>
-
  <script type="text/javascript">
+
      
-
  $(window).load(function() {
+
-
        $('#slider').nivoSlider();
+
-
     });
+
-
    </script>
+
-
 
-
<div class="row">
 
-
<div class="col12" id="spacer4"></div>
 
-
<div class="row-end"> </div>
 
-
</div>
 
</div>
</div>
-
 
+
<script>  
-
<div class="row">
+
var offset = 54;
-
<div class="col12" id="spacer4"></div>
+
$('#navbar li a').click(function(event) {
-
<div class="row-end"> </div>
+
if ( ($(this).attr('id')) == 'TitleID') {
-
</div>
+
return;
-
</div>
+
}
-
 
+
else {
-
 
+
    event.preventDefault();
-
<div class="row">
+
    $($(this).attr('href'))[0].scrollIntoView();
-
<div class="col" align = "center">
+
    scrollBy(0, -offset);
-
<a href="https://2012.igem.org/Team:Berkeley/Project">
+
}
-
<img src="https://static.igem.org/mediawiki/2012/d/db/Home_header2.jpg" width="980">
+
});
-
</a></div>
+
</script>
-
<div class="row-end" ></div>
+
-
</div>
+
-
 
+
-
<div class="row">
+
-
<div class="col12" id="spacer3"></div>
+
-
<div class="row-end"> </div>
+
-
</div>
+
-
 
+
-
<div class="row" align="center">
+
-
<div class="col3-2"style="background-color:#101a4d;">
+
-
<a href="https://2012.igem.org/Team:Berkeley/Project/Localization">
+
-
<img src="https://static.igem.org/mediawiki/2012/9/9e/Home_subheader1.jpg"
+
-
onmouseover="this.src='https://static.igem.org/mediawiki/2012/e/e0/Home_subheader1_hover.jpg'"
+
-
onmouseout="this.src='https://static.igem.org/mediawiki/2012/9/9e/Home_subheader1.jpg'" width="230"></a>
+
-
<p style="text-align:center; color:#cccccc;">Localization tags, promoter optimization, and promoter characterization.</p> </div>
+
-
 
+
-
<div class="col3-2"style="background-color:#333333;">
+
-
<a href="https://2012.igem.org/Team:Berkeley/Project/Construction">
+
-
<img src="https://static.igem.org/mediawiki/2012/9/96/Home_subheader2.jpg"
+
-
onmouseover="this.src='https://static.igem.org/mediawiki/2012/9/90/Home_subheader2_hover.jpg'"
+
-
onmouseout="this.src='https://static.igem.org/mediawiki/2012/9/96/Home_subheader2.jpg'" width="230"> </a>
+
-
<p style="text-align:center; color:#FFFFFF;">MiCode construction using Golden Gate Assembly.</p></div>
+
-
 
+
-
<div class="col3-2" style="background-color:#101a4d">
+
-
<a href="https://2012.igem.org/Team:Berkeley/Project/Automation">
+
-
<img src="https://static.igem.org/mediawiki/2012/1/18/Home_subheader3.jpg"
+
-
onmouseover="this.src='https://static.igem.org/mediawiki/2012/1/1d/Home_subheader3_hover.jpg'" width="230"
+
-
onmouseout="this.src='https://static.igem.org/mediawiki/2012/1/18/Home_subheader3.jpg'" width="230"></a>
+
-
<p style="text-align:center; color:#cccccc;">Automation techniques for image acquisition and cell identification with Matlab and Cell Profiler.</p></div>
+
-
 
+
-
<div class="col3-2"style="background-color:#333333">
+
-
<a href="https://2012.igem.org/Team:Berkeley/Project/Zippers">
+
-
<img src="https://static.igem.org/mediawiki/2012/a/a7/Home_subheader4.jpg"
+
-
onmouseover="this.src='https://static.igem.org/mediawiki/2012/5/58/Home_subheader4_hover.jpg'"
+
-
onmouseout="this.src='https://static.igem.org/mediawiki/2012/a/a7/Home_subheader4.jpg'" width="230"></a>
+
-
<p style="text-align:center; color:#FFFFFF;">Leucine Zippers affinity assay.</p></div>
+
-
<div class ="row-end"> </div>
+
-
</div>
+
-
 
+
-
 
+
-
<br>
+
-
<div class="row">
+
-
<div class="col" align = "center">
+
-
<img src="https://static.igem.org/mediawiki/2012/9/99/Home_header3.jpg" width="980">
+
-
<div class ="row-end"></div>
+
-
</div>
+
-
 
+
-
<div class="row">
+
-
<div class="col1" align="justify" >
+
-
<p>The UC Berkeley iGEM team would like to thank Agilent and the Synthetic Biology Institute for their financial support, Synberc for their administrative support, and IDT for discounted oligos. </p>
+
-
</div>
+
-
 
+
-
<div class = "row">
+
-
<div class="col1" align="center">
+
-
<a href="http://www.home.agilent.com/agilent/home.jspx?cc=US&lc=eng">
+
-
<img src="https://static.igem.org/mediawiki/2012/6/6b/Agilent_logo.png" width="800" ></a>
+
-
<a href="http://synbio.berkeley.edu/">
+
-
<img src="https://static.igem.org/mediawiki/2012/0/05/SynBioInst_logo.png" width="800"></a>
+
-
<a href="http://www.synberc.org/">
+
-
<img src="https://static.igem.org/mediawiki/2012/6/67/SynBERC_logo.png" width="300" > </a>
+
-
<a href="http://www.nsf.gov/">
+
-
<img src="https://static.igem.org/mediawiki/2012/7/7e/NSF_logo.png" width="250"></a>
+
-
<a href="http://www.idt.com/">
+
-
<img src="https://static.igem.org/mediawiki/2012/0/0a/IDT_logo_trans.png" width="300"></a>
+
-
 
+
-
 
+
-
<div class="row-end">
+
-
</div>
+
-
</div>
+
-
 
+
-
 
+
-
<img src="http://hitwebcounter.com/counter/counter.php?page=4590797&style=0024&nbdigits=5&type=ip&initCount=149" title="Go http://www.hitwebcounter.com/" Alt="Go http://www.hitwebcounter.com/"  border="0" >
+
-
<br/>
+
-
 
+
-
 
+
-
 
+
-
 
+
-
<div class="row">
+
-
<div class="col12" id="spacer4"></div>
+
-
<div class="row-end">
+
-
</div>
+
-
 
+
-
</body>
+
-
 
+
</html>
</html>

Latest revision as of 22:27, 28 October 2013

Notebooks

Retrieved from "http://2013.igem.org/Team:Berkeley/Notebooks"