Sponsors/MathWorks

From 2013.igem.org

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<center><img src="https://static.igem.org/mediawiki/2012/3/3f/MathWorks_logo.png" width="250px" height="50px"> </center>
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Accelerating the pace of engineering and science
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<h2> Software Offer </h2>
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<p> MathWorks is pleased to sponsor the 2013 iGEM Competition. MathWorks will provide software, training and technical support to all iGEM teams. The software kit includes MATLAB, Simulink, SimBiology, and 6 other toolboxes. </p>
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<a href="https://2013.igem.org/Main_Page">
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<img  src="https://static.igem.org/mediawiki/igem.org/d/de/IGEM_basic_Logo_stylized.png " width="" height="55px" style="float:right  ">
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<hx1> Software Offer  </hx1>
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<br><br>
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<p> MathWorks is pleased to sponsor the 2013 iGEM competition. As an iGEM partner, MathWorks will provide software and technical support to all iGEM teams that request it. Please complete the 
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<a href="http://www.mathworks.com/academia/student-competitions/software-request-registration-igem.html"
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style="color:#CC0000"> <b>Software Request Form</b></a> (must be completed by faculty advisor) to request the complementary software kit. </p>
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<p> To request your software, please complete the  <a href="http://www.mathworks.com/academia/student-competitions/software-request-registration-igem.html" style="color: #CC0000"> <b>Software Request Form </b> </a>  
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<p> The complementary software kit includes the following 9 products:</p> 
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<table style="color:#C0C0C0; padding:0px ; border-bottom:solid;border-top:solid;width:100%">
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<td style="padding-left:30px;margin-bottom:0px; padding-top:0px">
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<ul style="padding-right:30px; font-family: Verdana; color:#000000; margin:5px ">
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<li style="padding-bottom:5px"> MATLAB
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<li style="padding-bottom:5px">  Simulink
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<li style="padding-bottom:2px">  SimBiology
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</ul>
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</td>
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<td style="padding-left:30px; ">
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<ul style="padding-right:30px; font-family: Verdana;  color:#000000; margin:5px; ">
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<li style="padding-bottom:5px">  Optimization Toolbox
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<li style="padding-bottom:5px">  Statistics Toolbox
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<li style="padding-bottom:2px">  Bioinformatics Toolbox
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</ul>
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</td>
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<td style="padding-left:35px">
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<ul style="padding-right:30px; font-family: Verdana;  ;color:#000000; margin:5px; ">
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<li style="padding-bottom:5px"> Global Optimization Toolbox
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<li style="padding-bottom:5px"> Curve Fitting Toolbox
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<li style="padding-bottom:2px"> Symbolic Math Toolbox
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</ul>
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<p style = "font-size:75%; text-align:left" > ** See details of
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<a href="https://static.igem.org/mediawiki/igem.org/a/af/IGEM_Offer_of_Complimentary_Software_License%28s%29.pdf"> Offer of Complementary Software License(s) </a> </p> </p>
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<br>
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<h2> Getting Started </h2>
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Watch this video on <b><a href="http://bit.ly/J0Rms3"> Getting Started with SimBiology </a></b>to learn more about using SimBiology for modeling and simulating the dynamics of your synthetic biology systems.  </p>
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<hx1 style="font-size:120%; color:#000000"> MATLAB in Past iGEMs </hx1>
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<a href="http://bit.ly/J0Rms3">
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<p style="padding-right:20px"> See how former iGEMers used MathWorks tools, such as MATLAB and SimBiology, for a variety of modeling and simulation projects. A few examples from last year!
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<center><img src="https://static.igem.org/mediawiki/igem.org/c/ce/Simulation_image_1.png"  
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    title="Simulation plots of the Repressilator model in SimBiology"></center>
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<li> <span style="color:#0080FF "> Team UCL </span> built
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<a href="https://2012.igem.org/Team:University_College_London/Modelling" style="Font-Weight:" > multiple models</a>
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to validate, predict and optimize various aspects of their project, Plastic Republic.
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<li> <span style="color:#0080FF"> Team Calgary </span> created an <a href = "https://2012.igem.org/Team:Calgary/Project/FRED/Modelling" style="Font-Weight:"> deterministic model</a> to predict the time course and response time of their electrochemical sensor, FRED.
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<li> <span style="color:#0080FF"> Team Carnegie Mellon </span> derived an <a href =  "https://2012.igem.org/Team:Carnegie_Mellon/Mod-Overview" style="Font-Weight:"> ODE model</a> and used it with experimental time-course data to estimate key parameters like transcriptional and translational efficiency.
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<li> <span style="color:#0080FF"> Team Slovenia  </span>performed <a href =  "https://2012.igem.org/Team:Slovenia/ModelingPositiveFeedbackLoopSwitch" style="Font-Weight:"> parameter scans</a>  to better characterize the effects of the parameters space on the behavior their bistable system, Switch IT.
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<div class="section" style="width:550px; padding:15px; ">
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<hx1> Getting Started! </hx1>
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<br><br>
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<p style="padding-right:20px">
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Interested in using MATLAB for your <i> in silico </i> projects?
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We have put together a few <u> video tutorials </u> to help you get started. </p>
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<ul>
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<li style="padding-bottom:5px;" > <a href="http://www.mathworks.com/academia/student_center/tutorials/register.html"  style="text-decoration: none"> Getting started with MATLAB </a>
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<li style="padding-bottom:5px;"> <a href="http://www.mathworks.com/videos/building-a-model-in-simbiology-68960.html"  style="text-decoration: none"> Drag-and-drop model-building in SimBiology </a>
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<li style="padding-bottom:5px;"> <a href="http://www.mathworks.com/academia/student_center/tutorials/computational-math/solving-ordinary-diff-equations/player.html"  style="text-decoration: none">  
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Solving nonlinear differential equations in MATLAB </a>
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</ul>
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<p> For more resources, check out the
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<a href="http://www.mathworks.com/products/"> product pages</a>,
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<a href="http://www.mathworks.com/company/events/webinars/index.html"> webinars</a>, and
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<a href="http://www.mathworks.com/academia/student_center/tutorials/"> additional tutorials</a>.
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</p>
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<br>
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<p style="font-weight:bold"> Technical Mentoring </p>
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<p>
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Can't find what you are looking for? Have a specific question about using MATLAB tools for your iGEM work? We are here to help. Feel free to
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contact Asawari Samant via email at <u> asamant AT mathworks.com</u> to request assistance.
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</p>
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<br>
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<p> <b> Good luck with your projects! </b> </p>
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Latest revision as of 20:39, 4 April 2013

Accelerating the pace of engineering and science

Software Offer

MathWorks is pleased to sponsor the 2013 iGEM competition. As an iGEM partner, MathWorks will provide software and technical support to all iGEM teams that request it. Please complete the Software Request Form (must be completed by faculty advisor) to request the complementary software kit.


The complementary software kit includes the following 9 products:

  • MATLAB
  • Simulink
  • SimBiology
  • Optimization Toolbox
  • Statistics Toolbox
  • Bioinformatics Toolbox
  • Global Optimization Toolbox
  • Curve Fitting Toolbox
  • Symbolic Math Toolbox

** See details of Offer of Complementary Software License(s)


MATLAB in Past iGEMs

See how former iGEMers used MathWorks tools, such as MATLAB and SimBiology, for a variety of modeling and simulation projects. A few examples from last year!

  • Team UCL built multiple models to validate, predict and optimize various aspects of their project, Plastic Republic.
  • Team Calgary created an deterministic model to predict the time course and response time of their electrochemical sensor, FRED.
  • Team Carnegie Mellon derived an ODE model and used it with experimental time-course data to estimate key parameters like transcriptional and translational efficiency.
  • Team Slovenia performed parameter scans to better characterize the effects of the parameters space on the behavior their bistable system, Switch IT.

Getting Started!

Interested in using MATLAB for your in silico projects? We have put together a few video tutorials to help you get started.

For more resources, check out the product pages, webinars, and additional tutorials.


Technical Mentoring

Can't find what you are looking for? Have a specific question about using MATLAB tools for your iGEM work? We are here to help. Feel free to contact Asawari Samant via email at asamant AT mathworks.com to request assistance.


Good luck with your projects!

Retrieved from "http://2013.igem.org/Sponsors/MathWorks"