Sponsors/MathWorks

From 2013.igem.org

(Difference between revisions)

Latest revision as of 20:39, 4 April 2013

Accelerating the pace of engineering and science

Software Offer

MathWorks is pleased to sponsor the 2013 iGEM competition. As an iGEM partner, MathWorks will provide software and technical support to all iGEM teams that request it. Please complete the Software Request Form (must be completed by faculty advisor) to request the complementary software kit.

The complementary software kit includes the following 9 products:

MATLAB
Simulink
SimBiology

Optimization Toolbox
Statistics Toolbox
Bioinformatics Toolbox

Global Optimization Toolbox
Curve Fitting Toolbox
Symbolic Math Toolbox

** See details of Offer of Complementary Software License(s)

MATLAB in Past iGEMs

See how former iGEMers used MathWorks tools, such as MATLAB and SimBiology, for a variety of modeling and simulation projects. A few examples from last year!

Team UCL built multiple models to validate, predict and optimize various aspects of their project, Plastic Republic.
Team Calgary created an deterministic model to predict the time course and response time of their electrochemical sensor, FRED.
Team Carnegie Mellon derived an ODE model and used it with experimental time-course data to estimate key parameters like transcriptional and translational efficiency.
Team Slovenia performed parameter scans to better characterize the effects of the parameters space on the behavior their bistable system, Switch IT.

Getting Started!

Interested in using MATLAB for your in silico projects? We have put together a few video tutorials to help you get started.

For more resources, check out the product pages, webinars, and additional tutorials.

Technical Mentoring

Can't find what you are looking for? Have a specific question about using MATLAB tools for your iGEM work? We are here to help. Feel free to contact Asawari Samant via email at asamant AT mathworks.com to request assistance.

Good luck with your projects!

@@ Line 1: / Line 1: @@
 <HTML>
 <HEAD>
-<STYLE type="text/css">
+    <STYLE type="text/css">
 /*hide default igem banner and reformat style into blank slate*/
@@ Line 16: / Line 16: @@
 #content {width: 100%; border:none;}
 #bodyContent {border:none;}
-.left-menu {background-color:#111111; margin:0px 0px 0px 0px; padding:0;}
+.left-menu {background-color:white; margin:0px 0px 0px 0px; padding:0;}
 .left-menu ul {background-color:white; margin:0; padding:0;}
 .right-menu ul li a {background-color:white;}
 /*actual content styles*/
 body {width: 1000px; margin:auto;}
-.heading {
+.section {
-padding: 40px 50px 50px 50px;
+padding: 25px 5px 5px 5px;
 font-family: Lucida Grande, Verdana, Arial, sans-serif;
-font-size: 125% ;
+font-size: 115% ;
-margin-bottom: 150px;
+margin-bottom: 0px;
+color: #3E3E3E;
+}
+.section p {
+text-align:justify	;
 }
-.heading hxx {
+.section hx1 {
-color: /*#2fa001*/ #576f91;
+color: #576f91;
 font-size: 150%;
 font-weight: 150%;
@@ Line 40: / Line 42: @@
 text-shadow: #dadada 1px 1px 1px;
 padding-bottom: 50px;
 }
+.section ul  {
+padding-left: 30px;
+padding-bottom:1px;
+list-style:circle;
+}
+.section ul li{
+padding-bottom:10px;
+text-align:justify	;
+}
 </STYLE>
@@ Line 51: / Line 62: @@
 <BODY>
 <hr>
-<p style = "font-family:verdana; color:#576f91; font-style:italic;font-weight:demi"> <img  src="https://static.igem.org/mediawiki/2012/3/3f/MathWorks_logo.png" width="300px" height="60px" style="padding-right:20px">
+<p style = "font-family:verdana; color:#576f91; font-style:italic;font-weight:demi;">
-Accelerating the pace of engineering and science</p>
+<img  src="https://static.igem.org/mediawiki/2012/3/3f/MathWorks_logo.png" width="300px" height="60px" style="padding-right:20px; vertical-align:middle">
-<hr><br>
-<div class="heading">
+Accelerating the pace of engineering and science
-<hxx> Software Offer  </hxx>
+<a href="https://2013.igem.org/Main_Page">
+<img  src="https://static.igem.org/mediawiki/igem.org/d/de/IGEM_basic_Logo_stylized.png " width="" height="55px" style="float:right  ">
+</a>
+</p>
+<hr>
+<div class="section">
+<hx1> Software Offer  </hx1>
 <br><br>
-<p> MathWorks is pleased to sponsor the 2013 iGEM competition. As an iGEM partner, MathWorks will provide software and technical to all iGEM teams that request it. <br><br> The complementary software kit includes the following tools:
+<p> MathWorks is pleased to sponsor the 2013 iGEM competition. As an iGEM partner, MathWorks will provide software and technical support to all iGEM teams that request it. Please complete the
+<a href="http://www.mathworks.com/academia/student-competitions/software-request-registration-igem.html"
+style="color:#CC0000"> <b>Software Request Form</b></a> (must be completed by faculty advisor) to request the complementary software kit. </p>
 <br>
+<p> The complementary software kit includes the following 9 products:</p>
+<table style="color:#C0C0C0; padding:0px ; border-bottom:solid;border-top:solid;width:100%">
+<td style="padding-left:30px;margin-bottom:0px; padding-top:0px">
+<ul style="padding-right:30px; font-family: Verdana; color:#000000; margin:5px ">
+<li style="padding-bottom:5px">  MATLAB
+<li style="padding-bottom:5px">  Simulink
+<li style="padding-bottom:2px">  SimBiology
+</ul>
+</td>
+<td style="padding-left:30px; ">
+<ul style="padding-right:30px; font-family: Verdana;  color:#000000; margin:5px; ">
+<li style="padding-bottom:5px">  Optimization Toolbox
+<li style="padding-bottom:5px">  Statistics Toolbox
+<li style="padding-bottom:2px">  Bioinformatics Toolbox
+</ul>
+</td>
+<td style="padding-left:35px">
+<ul style="padding-right:30px; font-family: Verdana;  ;color:#000000; margin:5px; ">
+<li style="padding-bottom:5px"> Global Optimization Toolbox
+<li style="padding-bottom:5px"> Curve Fitting Toolbox
+<li style="padding-bottom:2px"> Symbolic Math Toolbox
+</ul>
+</td>
+</table>
+<p style = "font-size:75%; text-align:left" > ** See details of
+<a href="https://static.igem.org/mediawiki/igem.org/a/af/IGEM_Offer_of_Complimentary_Software_License%28s%29.pdf"> Offer of Complementary Software License(s) </a> </p> </p>
+</div>
+<br>
+<div style="width:100%; margin-bottom:100px">
+<div class="section" style="width:350px; border:solid; border-radius:15px; float:right;
+                            padding:15px; font-size:100%; background-color:#F5F5F5">
+<hx1 style="font-size:120%; color:#000000"> MATLAB in Past iGEMs </hx1>
+<p style="padding-right:20px"> See how former iGEMers used MathWorks tools, such as MATLAB and SimBiology, for a variety of modeling and simulation projects. A few examples from last year!
+<ul style="padding-right:20px; padding-left:20px">
+<li> <span style="color:#0080FF "> Team UCL </span> built
+<a href="https://2012.igem.org/Team:University_College_London/Modelling" style="Font-Weight:" > multiple models</a>
+to validate, predict and optimize various aspects of their project, Plastic Republic.
+<li> <span style="color:#0080FF"> Team Calgary </span> created an <a href = "https://2012.igem.org/Team:Calgary/Project/FRED/Modelling" style="Font-Weight:"> deterministic model</a> to predict the time course and response time of their electrochemical sensor, FRED.
+<li> <span style="color:#0080FF"> Team Carnegie Mellon </span> derived an <a href =  "https://2012.igem.org/Team:Carnegie_Mellon/Mod-Overview" style="Font-Weight:"> ODE model</a> and used it with experimental time-course data to estimate key parameters like transcriptional and translational efficiency.
+<li> <span style="color:#0080FF"> Team Slovenia  </span>performed <a href =  "https://2012.igem.org/Team:Slovenia/ModelingPositiveFeedbackLoopSwitch" style="Font-Weight:"> parameter scans</a>  to better characterize the effects of the parameters space on the behavior their bistable system, Switch IT.
-<ul style="padding-left: 15px">
-<li> MATLAB
-<li> Simulink
-<li> Statistics Toolbox
-<li> SimBiology
-<li> Bioinformatics Toolbox
-<li> Optimization Toolbox
-<li> Global Optimization Toolbox
-<li> Curve Fitting Toolbox
-<li> Symbolic Math Toolbox
 </ul>
+</p>
+</div>
-<br>
-Please complete the  <a href="http://www.mathworks.com/academia/student-competitions/software-request-registration-igem.html" style="color: #CC0000"> <b>Software Request Form </b> </a> ( must be completed by faculty advisor) to request the complementary software kit. </p>
+<div class="section" style="width:550px; padding:15px; ">
+<hx1> Getting Started! </hx1>
+<br><br>
+<p style="padding-right:20px">
+Interested in using MATLAB for your <i> in silico </i> projects?
+We have put together a few <u> video tutorials </u> to help you get started. </p>
+<ul>
+<li style="padding-bottom:5px;" > <a href="http://www.mathworks.com/academia/student_center/tutorials/register.html"  style="text-decoration: none"> Getting started with MATLAB </a>
+<li style="padding-bottom:5px;"> <a href="http://www.mathworks.com/videos/building-a-model-in-simbiology-68960.html"  style="text-decoration: none"> Drag-and-drop model-building in SimBiology </a>
+<li style="padding-bottom:5px;"> <a href="http://www.mathworks.com/academia/student_center/tutorials/computational-math/solving-ordinary-diff-equations/player.html"  style="text-decoration: none">
+	 Solving nonlinear differential equations in MATLAB </a>
+</ul>
+<p> For more resources, check out the
+<a href="http://www.mathworks.com/products/"> product pages</a>,
+<a href="http://www.mathworks.com/company/events/webinars/index.html"> webinars</a>, and
+<a href="http://www.mathworks.com/academia/student_center/tutorials/"> additional tutorials</a>.
+</p>
+<br>
+<p style="font-weight:bold"> Technical Mentoring </p>
-</div> <!-- close main item -->
+<p>
+Can't find what you are looking for? Have a specific question about using MATLAB tools for your iGEM work? We are here to help. Feel free to
+contact Asawari Samant via email at <u> asamant AT mathworks.com</u> to request assistance.
+</p>
+<br>
+<p> <b> Good luck with your projects! </b> </p>
+</div>
+</div>
 </BODY>
 </HTML>