Team:Newcastle

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Revision as of 10:55, 9 August 2013

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Our Project

Our project focuses on the creation and applications of L-forms: bacteria that grow without a cell wall. We propose L-forms as a novel chassis for synthetic biology. Our principle BioBrick switches Bacillus subtilis cells between rod-shape and L-form.

We will use microfluidics to attempt genome shuffling and shape-shifting. It is easier to fuse bacteria without cell walls. Fusion will cause genetic recombination, allowing directed evolution. We will put L-forms in moulds to observe if they adopt different shapes.

L-forms exist symbiotically in plants, which we will visualise by growing GFP labelled L-forms inside seedlings. L-forms could be engineered to supply nutrients to their host. L-forms are osmotically sensitive, giving biosecurity that they lyse if they escape from the plant.

As outreach we reflected upon our project's implications with stakeholders, created a BioGame for the public and developed a workshop for those new to modelling. Finally, we evaluated the relationship between synthetic biology and architecture.

Rod to L-form Switch BioBrick

An L-form is a bacterium that has no cell wall but is still able to multiply. Many species including Bacillus subtilis and Escherichia coli have an L-form. Losing the cell wall alters the characteristics of a bacterium creating a wealth of new applications for a bacterial species. In order to produce L-forms we have developed a BioBrick to allow the switching between the rod and L-form state of B. subtilis.

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Shape Shifting

The loss of the cell wall leaves L-forms protected by only a cell membrane. The plasma membrane of L-forms acts as a fluid, similar to that of eukaryotic cells. This allows L-forms to adapt to shapes of cracks and cavities, and possibly squeeze through tiny channels to deliver cargo to otherwise inaccessible targets.

We will inject L-forms into specially designed microfluidics chambers and observe their behaviour and shape. We are modelling membrane behaviour under stress conditions, which includes cell growth and boundaries provided by the chamber walls.

L-forms in Plants

L-forms and plants can exist in a symbiotic relationship as plants provide an osmotically suitable environment. In return, L-forms can confer benefits to their host including reducing the rate of fungal infection. We plan to wash seedlings in a solution of GFP labelled L-forms, allowing the seedlings to take up the bacteria. We will then view our L-forms inside the plant using confocal microscopy.

In the future, L-forms could be engineered to supply nutrients to plants, potentially increasing crop yield in low fertility soil. L-forms are osmotically sensitive, giving the ethical advantage that they lyse if they escape from their host plant into the environment. Please click this box for more information.

L-form

An L-form is a bacterium that has no cell wall. Bacterial morphology is determined by the cell wall, and so their morphology differs from the strain of bacteria from which they are derived, giving rise to a variety of cell sizes. The cell wall is important for cell division. Binary fission is a highly conserved mechanism required for proliferation of almost all cells. Due to the absence of the cell wall, L-forms are easily transformed, so we propose to use inducible L-forms of Bacillus subtilis as a novel chassis.

We are working on four themes which include: Shuffling, Recombination & Endosymbiosis; Introducing and detecting L-forms in Plants; Shape-shifting; Investigating two-component systems in L-forms. Details of the individual themes can be found under "Projects" on the main menu

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-The loss of the cell wall leaves L-forms protected by only a cell membrane. The plasma membrane of L-forms is quite fluid and it's shape is governed by laws of physics, just like that of eukaryotic cells. The advantage of this is that cells would be able to adapt to shapes of various cracks and cavities, or will be able to "squeeze through" tiny channels and deliver cargo to a hard-to reach target.
+The loss of the cell wall leaves L-forms protected by only a cell membrane. The plasma membrane of L-forms acts as a fluid, similar to that of eukaryotic cells. This allows L-forms to adapt to shapes of cracks and cavities, and possibly squeeze through tiny channels to deliver cargo to otherwise inaccessible targets.
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-We will test this hypothesis by injecting the L-forms into specially designed microfluidics chambers and observe their behaviour under the microscope. Prior to the experiment we will attempt to construct a rough model of the membrane behaviour under stress conditions, which include cell growth and boundaries provided by the chamber walls.
+We will inject L-forms into specially designed microfluidics chambers and observe their behaviour and shape. We are modelling membrane behaviour under stress conditions, which includes cell growth and boundaries provided by the chamber walls.
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