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Team:DTU-Denmark/Notebook/16 August 2013
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Set up new gradient PCR for Nir2 USER to run in 223. Reaction mix without MgCl2 but using DMSO and GC-buffer. | Set up new gradient PCR for Nir2 USER to run in 223. Reaction mix without MgCl2 but using DMSO and GC-buffer. | ||
| - | template: Nir2 extraction fragment | + | *template: Nir2 extraction fragment |
| - | + | *primers: 40a, 40b | |
| - | primers: 40a, 40b | + | *additives: 5% DMSO |
| - | + | *buffer: GC | |
| - | additives: 5% DMSO | + | |
| - | + | ||
| - | buffer: GC | + | |
Gradient went from 60C to 72C in 12 steps. | Gradient went from 60C to 72C in 12 steps. | ||
| Line 32: | Line 29: | ||
| temperature || 60.2 || 60.5 || 61.6 || 63.0 || 64.2 || 65.4 || 66.6 || 67.6 || 68.9 || 70.2 || 71.6 || 72 | | temperature || 60.2 || 60.5 || 61.6 || 63.0 || 64.2 || 65.4 || 66.6 || 67.6 || 68.9 || 70.2 || 71.6 || 72 | ||
|} | |} | ||
| + | |||
| + | ===PCR for BioBrick construction=== | ||
| + | |||
| + | PCR amplified the constructs from Hello World and cytochromes and pSB1C3, which will be ligated together into biobricks. | ||
| + | |||
| + | <u>constructs</u>: | ||
| + | *GC-buffer, 5%DMSO, 2uL 50mM MgCl2 | ||
| + | *primers: 53a, 53b | ||
| + | *templates: TAT3-2, Sec2, cycAX | ||
| + | |||
| + | Used two different temperatures. Program: | ||
==Results== | ==Results== | ||
Revision as of 12:00, 16 August 2013
16 August 2013
Contents |
lab 208
Main purpose
Who was in the lab
Kristian, Julia, Henrike
Procedure
Gradient PCR for Nir2 USER
Set up new gradient PCR for Nir2 USER to run in 223. Reaction mix without MgCl2 but using DMSO and GC-buffer.
- template: Nir2 extraction fragment
- primers: 40a, 40b
- additives: 5% DMSO
- buffer: GC
Gradient went from 60C to 72C in 12 steps.
| sample # | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 |
| temperature | 60.2 | 60.5 | 61.6 | 63.0 | 64.2 | 65.4 | 66.6 | 67.6 | 68.9 | 70.2 | 71.6 | 72 |
PCR for BioBrick construction
PCR amplified the constructs from Hello World and cytochromes and pSB1C3, which will be ligated together into biobricks.
constructs:
- GC-buffer, 5%DMSO, 2uL 50mM MgCl2
- primers: 53a, 53b
- templates: TAT3-2, Sec2, cycAX
Used two different temperatures. Program:
Results
Conclusion
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