Team:Groningen/Project/Silk

From 2013.igem.org

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<h1>Spider Silk</h1>
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NOTE: This part should contain an introduction to how cool silk is an why it is so good as an coating product (Silk vs collagen)
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<p>
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<br><br><br><br>
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Spider silk is a biomaterial with great potential. On one hand it has incredible high tensile strength combined with elasticity, which makes spider silk as strong as steel and tougher than kevlar [1]. On the other hand spider silk also has some peculiar medical properties. Foremost the fact that spider silk (and silk in general) does not cause a strong immune response in the human body [7]. Immune response obviously being one of the major concerns when placing implants inside patients, so our iGEM team saw a great opportunity to combine the spider silk with the implants.
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</p>
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<h2>Background</h2>
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<p>
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<h1>Silk</h1>
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There are many arthropods that have the ability to produce silk, most popular being the <i>Bombyx mori</i> silk worm used in the production of silk for clothing. However the spider easily takes the crown in terms of applications. The spider uses its silk as their Swiss Army Knife, some of these uses include, spinnig webs for catching preys, Dragline's for better movement, and for reproduction [2]. Over the 400 million years of evolution the silk is optimized in many aspects. Like with many fascinating phenomena from nature, humans have learned to utilize the spider webs. The Nephila spiders in tropical rain forests (of Papua New Guinea) have powerful webs to catch flying birds, and ancient cultures have used these webs for fishing purposes [13].</p>
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<p>Silk is a natural protein fibre that is known for its use in textiles. The best known silk comes from the silk moth pupa but arthropods are also capable of producing silk. One of the arthropods well known for its silk is the spider.</p>
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<p>Spider Silk is amazing but currently large scale production is impossible. Various techniques to produce spider silk are being considered and one of them is letting bacteria produce the silk. This idea is promising although one of the main challenges is the low production rate of bacteria. </p>
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<p>Silk has some really nice attributes and some of these attributes are feasible for medical devices. Silk is an inalergic biomaterial and it is proven to enhance the healing process when it is used as a cover of implants, allowing for better acceptance by the human body (Vepari & Kaplan 2007, Mandal et al 2012).</p>
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<p>The industry from which silk is obtained, however, is less than ideal. Scientists have therefore begun to design silk-producing micro-organisms. The 2012 iGEM team from Utah have indeed successfully designed BioBricks for this very purpose.</p>
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<p>Though there has been some success in producing silk in bacteria (Xia et al 2010), currently the bacteria needs to be killed in order to extract the silk. In this project the plan is to have the bacteria secrete the silk so that it can live and continue to produce more silk. Also the the design needs to be made such that most of the silk production happens at the required location to compensate for the low production volume.</p>
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<h2> The properties of silk </h2>
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<p>The unique properties of silk are a result of its highly constant and repetitive amino-acid structure. The sequence of amino-acids determines what secondary structures will arise, and thus the final preferred protein conformation. The secondary structures may be beta sheets, beta-spirals, and beta-helices, of which the sheets realize the silk's amazing tensile strength, and the spirals and helices its elongation.</p>
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<p>In the figure below a stress-strain diagram can be found (Frank K. Ko, et at. 2001) where Clavipus spider silk is compared to, Kevlar 29, normal silkworm silk, PET (polyethylene terephthalate), Nylon 6, and Merino wool. The stress-strain diagram relates the degree of deformation to the amount of energy absorbed. </p>
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<img src="http://img13.imageshack.us/img13/4076/el5c.jpg" width="100%">
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</html>[[File:Stressstrain.JPG]] <html>
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<br>
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<p>
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The medical properties of spider silk have been known for a long time; there are many records of uses throughout history.
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<br>The oldest known application of a spider web dates back to from Ancient Greece were it was used as wound dressing [13]. Some other historical mentions date from around 1600. In the Polish book ‘With Fire and Sword’:
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<br><i>‘ “This is nothing, nothing at all” said he, feeling the wounds with his fingers. “He will be well to-morrow. I will take care of him. Mix up bread and spider-webs for me! ’</i>
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<br>
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<br>
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And in the famous Shakespearian  comedy ‘Midsummer Night’s Dream’:
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<br><i>“I shall desire you of more acquaintance, good master cobweb,
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If I cut my finger, I shall make bold of you.”</i>
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</p>
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<img src="http://img546.imageshack.us/img546/439/vdre.jpg" width="100%">
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</td></tr></table>
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<br>
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<p>
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When used as clothing, silk has many beneficial properties. Its smooth, compact surface feels and looks nice, and it enables easy removal of dirt. It is a bad conductor of heat, making it cool in the summer and warm in the winter. Furthermore, it has a water absorption efficiency similar to that of wool, and is resistant to insects and mildew.
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Apparently the medical properties of spider webs have been known for a long time. Its use as wound cover improves the recovery without causing problems. What is it that gives the spider silk such excellent healing properties?</p>
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</p><p>
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A final general property of silk it that it can be integrated with the human body - it will not induce an immune response - potentially making it an ideal choice for many biomedical applications. Its compatibility extends to the gastrointestinal tract, that is, it is even safe to eat!
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<br>
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<h2>Biomedical properties</h2>
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<div align="center">
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<table id="layout" width="55%">
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<td>
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<A href="http://www.flickr.com/photos/basf/5412675961/in/set-72157624601397168"><img src="http://farm5.staticflickr.com/4110/5412675961_5defa98b10.jpg" width="100%"></a>
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<font size="1">Figure 1, Cells growing under a spider silk non-woven bandage. Magnification 3200:1.<b> [11]</b></i></font>
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</table>
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<br>
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<p>
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Normal cells need a scaffold to adhere to. If there is a wound the tissue is repaired very slowly, and only after that the cells from the wound are able to completely recover. When a wound is covered with a good biomedical material, the cells will start to spread, proliferate and differentiate more quickly. On an unsuitable material, the interaction can lead to immune responses and cell death.
</p>
</p>
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<p>
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Spider silk is suitable as biomedical material because:
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<ol type="numbers">
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<li>
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<b>It has no toxicity [3-5]</b>. Short-term and long-term tests with various cell lines gave no indication of toxicity.
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</li>
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<li>
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<b>No/low immune response [7-9]</b>. Different types of cells were examined for immunological response to silk. One study compared collagen, which is used as biomaterial for coating, to silk. The results favoured silk, and deemed silk as being biocompatible [7].</li><li>
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<b>No inflammation</b>. The body will not detect the silk as a foreign material, as it consists of a smooth protein layer.</li><li>
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<b>Cell adherence [6]</b>. This depends on the processing of the silk. With small modifications (for instance, genetic addition of an RGD motif) cell adhesion can be improved, to stimulate tissue recovery of a wound. However, for the use of implants, cell adhesion is undesired, as fibrosis can occur.</li><li>
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<b>Biodegradable</b>. Spider silk has a slow biodegradability, which is useful for medical applications.</li><li>
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<b>Elasticity and mechanical properties</b>. The spider silk material is strong and stable material. The elasticity of a biomedical material has shown to influence cell growth and proliferation, and therefore the flexible and adjustable spider silk is very potent.</li><li>
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<b>Does not swell</b>. Due to the nature of the protein it is both hydrophilic and hydrophobic, the latter preventing any major uptake of water.</li><li>
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<b>No bacterial or fungal degradation [7]</b>; this is credited to the long evolution. One can imagine that if the base of a spiders nature, its web, would be easily torn apart by the hundreds of bacteria and fungi around, then they would not have gotten this far. The silk typically has a very flat surface that does not allow cells to grow on it very easily, nor be identified by antibodies.</li></ol>
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</p>
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<br>
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<h2> The production of silk</h2>
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<div align="center">
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<p>The farming of silk is an arduous, time consuming, and costly process. Although a single cocoon may produce up to one mile of filament, 4 to 8 filaments are needed to produce a single thread, and approximately 5500 cocoons are needed for one kilogram of silk. Eight fully grown mulberry trees would have been needed for this single kilogram, and 48 hours of man-labor required to hand-reel it. Finally, the caterpillars required a full month to mature and three to five days to spin their cocoons, after which they were brutally boiled alive.
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Harvesting the more desired and rare silk from spiders requires an even more labor-extensive process. Each thread actually has to be pulled individually by hand from the spiders gland - needless to say, not a viable business plan!
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<img src="http://img819.imageshack.us/img819/9168/1o11.png" width="100%"></a>
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<font size="1">Figure 2, Overview of biomedical advantages </i></font>
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</td>
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</table>
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<br>
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<p>
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Studies performed with coated implants in mice and pigs support these medical properties. Also spider silk coated breast implants are tested in preclinical trials, and have so far shown promising results [10].
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</p>
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<br>
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<table  id="normal" width=60%>
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<tr>
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<th>Biomedical material</th>
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<th>Spider Silk</th>
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<th>Collagen</th>
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</tr>
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<tr>
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<td>No inflammation</td>
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<td></html>[[File:Green_tick.gif | 25px]]<html></td>
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<td></html>[[File:Green_tick.gif | 25px]]<html></td>
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</tr>
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<tr>
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<td>No immune response</td>
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<td></html>[[File:Green_tick.gif | 25px]]<html></td>
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<td></html>[[File:Green_tick.gif | 25px]]<html></td>
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</tr>
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<tr>
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<td>High tensile strength</td>
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<td></html>[[File:Green_tick.gif | 25px]]<html></td>
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<td></html>[[File:Green_tick.gif | 25px]]<html></td>
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</tr>
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<tr>
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<td>Low bacterial adherence</td>
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<td></html>[[File:Green_tick.gif | 25px]]<html></td>
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<td></td>
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</tr>
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<tr>
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<td>Stable, slow-degrading</td>
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<td></html>[[File:Green_tick.gif | 25px]]<html></td>
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<td></td>
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</tr>
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<tr>
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<td>No disease transmission</td>
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<td></html>[[File:Green_tick.gif | 25px]]<html></td>
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<td></td>
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</tr>
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<tr>
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<td>Promotes cell adherence</td>
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<td></html>[[File:Green_tick.gif | 25px]]<html></td>
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<td></html>[[File:Green_tick.gif | 25px]]<html></td>
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</tr>
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<td>Promotes regeneration</td>
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<td></html>[[File:Green_tick.gif | 25px]]<html></td>
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<td></td>
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<td colspan="3"><font size="1">Table 1: Comparison of spider silk with another biomedical material: collagen. Collagen is a mammalian fibrous protein, and in many respects similar to spider silk. However, there are still limits to collagen, and some aspects where spider silk is superiour [8]</font></td>
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</tr>
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</table>
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</div>
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<p>
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Spider silk is our choice to approach the problems of medical implants. However, so far no large scale production of spider silk is achieved, and production, purification and processing are challenging. Why is the production of the spider silk protein so difficult? How can we make a coating from the spider silk? </p>
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<br>
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<h2>Silk protein</h2>
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<p>
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The spider silk protein is a fibrous protein. It does not have a folded state on its own; it is able to assemble (multimerize) with multiple identical proteins to form the silk material. The protein consists of roughly 3 motifs, each featuring a particular secondary structure in the assembly (Table 2).
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</p>
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<br>
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<table id="normal">
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<tr>
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<th>Amino acid sequence</th>
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<th>Secondary structure</th>
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<th>Properties</th>
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</tr>
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<tr>
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<td>AAAAAAAA</td>
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<td>β-sheet</td>
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<td>Tensile strenght, rigidity, hydrophobicity</td>
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</tr>
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<tr>
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<td>GPG(AG)QQ / GPG(SGG)QQ / GPGGX</td>
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<td>β-spiral / β-turn</td>
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<td>Extensibility, elasticity</td>
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</tr>
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<tr>
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<td>GGX</td>
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<td>3<sub>10</sub> helix</td>
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<td>Link, alignment, flexibility</td>
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</tr>
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</table>
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<font size="1">Table 2, Spider silk protein motifs</font><br><br>
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<p>
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Depending on the processing of the silk proteins the material can have a degree of these secondary structures, defining its properties (Table 2). The processing inside a spider is still not completely elucidated. The spider has a special duct in which many processes take place, among which are drastic decrease in pH, and change in salts [14]. The latter is also utilized in the processing of recombinant spider silk. It was found that kosmotropic ions ("salting-out"), such as phosphate and potassium, induce beta-sheet formation and thus rigidity and hydrophobicity of the silk.</p><p>
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<br>
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This is because the assembly of the silk proteins is induced by depletion of solvent (generally water). Any action or substance that can contribute to the removal of water, can also contribute to polymerization and structure of the spider silk. Often methanol is used to improve the formation of beta-sheets[14].
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</p>
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<br>
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<p>
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In order to make our spider silk coating material, a large amount of these proteins are required. The protein has a very repetitive nature (fig. 2), with these motifs (table 2) recurring within the protein. This makes is difficult to translate the protein, because it requires presence of the same tRNAs in a large amount. This can be solved with codon optimization. See <A href="https://2013.igem.org/Team:Groningen/Navigation/Codonoptimization">codon optimization</a> at the modelling section for the explanation of this approach.
</p>
</p>
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<p>The silk industry itself has undergone very little development over the past few millennia. Indeed, the manner in which it is obtained follows the very same process as that since it's initial discovery, albeit at a much grander scale with more specialized equipment. Scientists have therefore begun to design their own silk producing organisms [2]. Moreover, the 2012 iGEM team from Utah successfully designed the first spider-silk producing Biobricks for Escherichia coli  (for more information, please visit their [https://2012.igem.org/Team:Utah_State wiki]). Such advancements are needed to provide the industries and manufacturers with sufficient silk proteins for their applications. </p>
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<h2> Applications for silk</h2>
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<div align="left">
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<p>Silk's journey as a product began as luxurious clothing reserved exclusively for the emperor subsequent to its initial discovery. As the sericulture developed, however, it was soon adopted by all classes of society. New applications were discovered, and it was spun into many different products; fishing lines, musical instruments, and bowstrings to name a few. It's utility and value were also recognized by other kingdoms, and a world-wide, ever increasing demand for the material began. Indeed, the western demand for silk was so great, that the main set of trade routes between Europe and Asia became known as the Silk Road. </p>
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<table  id="layout" width=40%>
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<p> .... Nowadays, the variety of silk applications is even more extensive; bullet-proof clothing, all sorts of ropes and cables, artificial tendons and ligaments, bandages, sewing thread, seat belts, parachutes, biodegradable bottles, and much more..... </p>
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<img src="https://static.igem.org/mediawiki/2013/9/95/Masp2.jpg" width="100%">
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<font size="1">Figure 2, Major ampullate Spidroin 2 (MaSp2) from <i>Argiope aurantia</i></font>
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</table>
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<h2>References</h2></P>
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<font size="1,5">
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[1] &nbsp;&nbsp;&nbsp; Griffiths, J. R., and V. R. Salanitri. "The Strength of Spider Silk." Journal of Materials Science 15.2 (1980): 491-96<br>
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[2] &nbsp;&nbsp;&nbsp; Foelix, Rainer F. Biology of Spiders. New York: Oxford UP, 1996.<br>
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[3] &nbsp;&nbsp;&nbsp; Liu, Tie-lian, Jing-cheng Miao, Wei-hua Sheng, Yu-feng Xie, Quan Huang, Yun-bo Shan, and Ji-cheng Yang. "Cytocompatibility of Regenerated Silk Fibroin Film: A Medical Biomaterial Applicable to Wound Healing." Journal of Zhejiang University SCIENCE B 11.1 (2010): 10-16<br>
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[4] &nbsp;&nbsp;&nbsp; Allmeling, Christina. "Use of Spider Silk Fibres as an Innovative Material in a Biocompatible Artificial Nerve Conduit." Journal of Cellular and Molecular Medicine 10.3 (2006): n. pag.<br>
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[5] &nbsp;&nbsp;&nbsp; Acharya, C., B. Hinz, and S. Kundu. "The Effect of Lactose-conjugated Silk Biomaterials on the Development of Fibrogenic Fibroblasts." Biomaterials 29.35 (2008): 4665-675. Print.<br>
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[6] &nbsp;&nbsp;&nbsp; Seo, Y. K., H. H. Yoon, Y. S. Park, K. Y. Song, W. S. Lee, and J. K. Park. "Correlation between Scaffold in Vivo Biocompatibility and in Vitro Cell Compatibility Using Mesenchymal and Mononuclear Cell Cultures." Cell Biology and Toxicology 25.5 (2009): 513-22<br>
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[7] &nbsp;&nbsp;&nbsp; Meinel, L., S. Hofmann, V. Karageorgiou, C. Kirkerhead, J. Mccool, G. Gronowicz, L. Zichner, R. Langer, G. Vunjaknovakovic, and D. Kaplan. "The Inflammatory Responses to Silk Films in Vitro and in Vivo." Biomaterials 26.2 (2005): 147-55<br>
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[8] &nbsp;&nbsp;&nbsp; MacIntosh, Ana C., Victoria R. Kearns, Aileen Crawford, and Paul V. Hatton. "Skeletal Tissue Engineering Using Silk Biomaterials." Journal of Tissue Engineering and Regenerative Medicine 2.2-3 (2008): 71-80<br>
 +
[9] &nbsp;&nbsp;&nbsp; Panilaitis, B. "Macrophage Responses to Silk." Biomaterials 24.18 (2003): 3079-085<br>
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[10] &nbsp;&nbsp;&nbsp; AMSilk GmbH, http://www.amsilk.com/en/products/implant-coating.html, Copyright © 2013 AMSilk GmbH<br>
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[11] &nbsp;&nbsp;&nbsp; BASF The Chemical Company, January 26 2011, http://www.flickr.com/photos/basf/5412675961/in/set-72157624601397168, Copyright 2011 BASF<br>
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[12] &nbsp;&nbsp;&nbsp; Hayashi, Cheryl Y., Nichola H. Shipley, and Randolph V. Lewis. "Hypotheses That Correlate the Sequence, Structure, and Mechanical Properties of Spider Silk Proteins." International Journal of Biological Macromolecules 24.2-3 (1999): 271-75<br>
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[13] &nbsp;&nbsp;&nbsp; Scheibel T., ETSI Caminos, "Silk structure, silk protein folding and assembly", http://www.youtube.com/watch?feature=player_detailpage&v=vIcMd9BjSFo#t=211<br>
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[14]  &nbsp;&nbsp;&nbsp; Spiess, Kristina, Andreas Lammel, and Thomas Scheibel. "Recombinant Spider Silk Proteins for Applications in Biomaterials." Macromolecular Bioscience 10.9 (2010): 998-1007<br>
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Latest revision as of 03:35, 5 October 2013

Spider Silk

Spider silk is a biomaterial with great potential. On one hand it has incredible high tensile strength combined with elasticity, which makes spider silk as strong as steel and tougher than kevlar [1]. On the other hand spider silk also has some peculiar medical properties. Foremost the fact that spider silk (and silk in general) does not cause a strong immune response in the human body [7]. Immune response obviously being one of the major concerns when placing implants inside patients, so our iGEM team saw a great opportunity to combine the spider silk with the implants.

Background

There are many arthropods that have the ability to produce silk, most popular being the Bombyx mori silk worm used in the production of silk for clothing. However the spider easily takes the crown in terms of applications. The spider uses its silk as their Swiss Army Knife, some of these uses include, spinnig webs for catching preys, Dragline's for better movement, and for reproduction [2]. Over the 400 million years of evolution the silk is optimized in many aspects. Like with many fascinating phenomena from nature, humans have learned to utilize the spider webs. The Nephila spiders in tropical rain forests (of Papua New Guinea) have powerful webs to catch flying birds, and ancient cultures have used these webs for fishing purposes [13].


The medical properties of spider silk have been known for a long time; there are many records of uses throughout history.
The oldest known application of a spider web dates back to from Ancient Greece were it was used as wound dressing [13]. Some other historical mentions date from around 1600. In the Polish book ‘With Fire and Sword’:
‘ “This is nothing, nothing at all” said he, feeling the wounds with his fingers. “He will be well to-morrow. I will take care of him. Mix up bread and spider-webs for me! ’

And in the famous Shakespearian comedy ‘Midsummer Night’s Dream’:
“I shall desire you of more acquaintance, good master cobweb, If I cut my finger, I shall make bold of you.”


Apparently the medical properties of spider webs have been known for a long time. Its use as wound cover improves the recovery without causing problems. What is it that gives the spider silk such excellent healing properties?


Biomedical properties

Figure 1, Cells growing under a spider silk non-woven bandage. Magnification 3200:1. [11]

Normal cells need a scaffold to adhere to. If there is a wound the tissue is repaired very slowly, and only after that the cells from the wound are able to completely recover. When a wound is covered with a good biomedical material, the cells will start to spread, proliferate and differentiate more quickly. On an unsuitable material, the interaction can lead to immune responses and cell death.

Spider silk is suitable as biomedical material because:

  1. It has no toxicity [3-5]. Short-term and long-term tests with various cell lines gave no indication of toxicity.
  2. No/low immune response [7-9]. Different types of cells were examined for immunological response to silk. One study compared collagen, which is used as biomaterial for coating, to silk. The results favoured silk, and deemed silk as being biocompatible [7].
  3. No inflammation. The body will not detect the silk as a foreign material, as it consists of a smooth protein layer.
  4. Cell adherence [6]. This depends on the processing of the silk. With small modifications (for instance, genetic addition of an RGD motif) cell adhesion can be improved, to stimulate tissue recovery of a wound. However, for the use of implants, cell adhesion is undesired, as fibrosis can occur.
  5. Biodegradable. Spider silk has a slow biodegradability, which is useful for medical applications.
  6. Elasticity and mechanical properties. The spider silk material is strong and stable material. The elasticity of a biomedical material has shown to influence cell growth and proliferation, and therefore the flexible and adjustable spider silk is very potent.
  7. Does not swell. Due to the nature of the protein it is both hydrophilic and hydrophobic, the latter preventing any major uptake of water.
  8. No bacterial or fungal degradation [7]; this is credited to the long evolution. One can imagine that if the base of a spiders nature, its web, would be easily torn apart by the hundreds of bacteria and fungi around, then they would not have gotten this far. The silk typically has a very flat surface that does not allow cells to grow on it very easily, nor be identified by antibodies.


Figure 2, Overview of biomedical advantages

Studies performed with coated implants in mice and pigs support these medical properties. Also spider silk coated breast implants are tested in preclinical trials, and have so far shown promising results [10].


Biomedical material Spider Silk Collagen
No inflammation 25px 25px
No immune response 25px 25px
High tensile strength 25px 25px
Low bacterial adherence 25px
Stable, slow-degrading 25px
No disease transmission 25px
Promotes cell adherence 25px 25px
Promotes regeneration 25px
Table 1: Comparison of spider silk with another biomedical material: collagen. Collagen is a mammalian fibrous protein, and in many respects similar to spider silk. However, there are still limits to collagen, and some aspects where spider silk is superiour [8]

Spider silk is our choice to approach the problems of medical implants. However, so far no large scale production of spider silk is achieved, and production, purification and processing are challenging. Why is the production of the spider silk protein so difficult? How can we make a coating from the spider silk?


Silk protein

The spider silk protein is a fibrous protein. It does not have a folded state on its own; it is able to assemble (multimerize) with multiple identical proteins to form the silk material. The protein consists of roughly 3 motifs, each featuring a particular secondary structure in the assembly (Table 2).


Amino acid sequence Secondary structure Properties
AAAAAAAA β-sheet Tensile strenght, rigidity, hydrophobicity
GPG(AG)QQ / GPG(SGG)QQ / GPGGX β-spiral / β-turn Extensibility, elasticity
GGX 310 helix Link, alignment, flexibility
Table 2, Spider silk protein motifs

Depending on the processing of the silk proteins the material can have a degree of these secondary structures, defining its properties (Table 2). The processing inside a spider is still not completely elucidated. The spider has a special duct in which many processes take place, among which are drastic decrease in pH, and change in salts [14]. The latter is also utilized in the processing of recombinant spider silk. It was found that kosmotropic ions ("salting-out"), such as phosphate and potassium, induce beta-sheet formation and thus rigidity and hydrophobicity of the silk.


This is because the assembly of the silk proteins is induced by depletion of solvent (generally water). Any action or substance that can contribute to the removal of water, can also contribute to polymerization and structure of the spider silk. Often methanol is used to improve the formation of beta-sheets[14].


In order to make our spider silk coating material, a large amount of these proteins are required. The protein has a very repetitive nature (fig. 2), with these motifs (table 2) recurring within the protein. This makes is difficult to translate the protein, because it requires presence of the same tRNAs in a large amount. This can be solved with codon optimization. See codon optimization at the modelling section for the explanation of this approach.


Figure 2, Major ampullate Spidroin 2 (MaSp2) from Argiope aurantia


References

[1]     Griffiths, J. R., and V. R. Salanitri. "The Strength of Spider Silk." Journal of Materials Science 15.2 (1980): 491-96
[2]     Foelix, Rainer F. Biology of Spiders. New York: Oxford UP, 1996.
[3]     Liu, Tie-lian, Jing-cheng Miao, Wei-hua Sheng, Yu-feng Xie, Quan Huang, Yun-bo Shan, and Ji-cheng Yang. "Cytocompatibility of Regenerated Silk Fibroin Film: A Medical Biomaterial Applicable to Wound Healing." Journal of Zhejiang University SCIENCE B 11.1 (2010): 10-16
[4]     Allmeling, Christina. "Use of Spider Silk Fibres as an Innovative Material in a Biocompatible Artificial Nerve Conduit." Journal of Cellular and Molecular Medicine 10.3 (2006): n. pag.
[5]     Acharya, C., B. Hinz, and S. Kundu. "The Effect of Lactose-conjugated Silk Biomaterials on the Development of Fibrogenic Fibroblasts." Biomaterials 29.35 (2008): 4665-675. Print.
[6]     Seo, Y. K., H. H. Yoon, Y. S. Park, K. Y. Song, W. S. Lee, and J. K. Park. "Correlation between Scaffold in Vivo Biocompatibility and in Vitro Cell Compatibility Using Mesenchymal and Mononuclear Cell Cultures." Cell Biology and Toxicology 25.5 (2009): 513-22
[7]     Meinel, L., S. Hofmann, V. Karageorgiou, C. Kirkerhead, J. Mccool, G. Gronowicz, L. Zichner, R. Langer, G. Vunjaknovakovic, and D. Kaplan. "The Inflammatory Responses to Silk Films in Vitro and in Vivo." Biomaterials 26.2 (2005): 147-55
[8]     MacIntosh, Ana C., Victoria R. Kearns, Aileen Crawford, and Paul V. Hatton. "Skeletal Tissue Engineering Using Silk Biomaterials." Journal of Tissue Engineering and Regenerative Medicine 2.2-3 (2008): 71-80
[9]     Panilaitis, B. "Macrophage Responses to Silk." Biomaterials 24.18 (2003): 3079-085
[10]     AMSilk GmbH, http://www.amsilk.com/en/products/implant-coating.html, Copyright © 2013 AMSilk GmbH
[11]     BASF The Chemical Company, January 26 2011, http://www.flickr.com/photos/basf/5412675961/in/set-72157624601397168, Copyright 2011 BASF
[12]     Hayashi, Cheryl Y., Nichola H. Shipley, and Randolph V. Lewis. "Hypotheses That Correlate the Sequence, Structure, and Mechanical Properties of Spider Silk Proteins." International Journal of Biological Macromolecules 24.2-3 (1999): 271-75
[13]     Scheibel T., ETSI Caminos, "Silk structure, silk protein folding and assembly", http://www.youtube.com/watch?feature=player_detailpage&v=vIcMd9BjSFo#t=211
[14]     Spiess, Kristina, Andreas Lammel, and Thomas Scheibel. "Recombinant Spider Silk Proteins for Applications in Biomaterials." Macromolecular Bioscience 10.9 (2010): 998-1007