Template:Kyoto/Notebook/Sep 15

From 2013.igem.org

(Difference between revisions)

Latest revision as of 00:39, 27 September 2013

Sep 15

Miniprep

No name

DNA	concentration[µg/mL]	260/280	260/230
Pλ-luxI	225	1.59	0.83

Liquid Culture

No name

Sample	medium
9/13 Pλ-luxI-1
9/7 pSB4K5-1
9/11 Plac-3

Ligation

No name

state	Vector		Inserter		Ligation High ver.2
experiment	9/13 Pcon(SpeI & PstI)	3.6 µL	9/12 RBS-lacZα-DT(XbaI & PstI)	4.7 µL	8 µL

Restriction Enzyme Digestion

No Name

	DNA	EcorI	SpeI	Buffer	BSA	MilliQ	total
9/7Pcon-RBS-tetR-DT (EcoRI & SpeI)	15 µL	1 µL	1 µL	3 µL	3 µL	6 µL	30 µL
NC	0.7 µL	0 µL	0 µL	1 µL	1 µL	7.3 µL	10 µL

	DNA	EcoRI	SpeI	Buffer	BSA	MilliQ	total
9/12 Pcon-pT181 attenuator-DT (EcoRI & SpeI)	6.8 µL	1 µL	1 µL	3 µL	3 µL	15.2 µL	30 µL
NC	0.3 µL	0 µL	0 µL	1 µL	1 µL	7.7 µL	10 µL

	DNA	EcoRI	SpeI	Buffer	BSA	MilliQ	total
9/12 Pcon-apt12_1R-DT(EcoRI & SpeI)	6.6 µL	1 µL	1 µL	3 µL	3 µL	15.4 µL	30 µL
NC	0.3 µL	0 µL	0 µL	1 µL	1 µL	7.7 µL	10 µL

	DNA	EcoRI	SpeI	Buffer	BSA	MilliQ	total
9/8 Pcon-spinach-DT (EcoRI & SpeI)	7.6 µL	1 µL	1 µL	3 µL	3 µL	15.4 µL	30 µL
NC	0.3 µL	0 µL	0 µL	1 µL	1 µL	7.7 µL	10 µL

	DNA	XbaI	PstI	Buffer	BSA	MilliQ	total
9/11 Pcon-pT181 anticodone-spinach-DT(XbaI & PstI)	7.2 µL	1 µL	1 µL	3 µL	3 µL	14.8 µL	30 µL
NC	0.4 µL	0 µL	0 µL	1 µL	1 µL	7.6 µL	10 µL

	DNA	XbaI	PstI	Buffer	BSA	MilliQ	total
8/17 RBS-lacZα-DT (XbaI & PstI)	5.3 µL	1 µL	1 µL	3 µL	3 µL	16.7 µL	30 µL
NC	0.5 µL	0 µL	0 µL	1 µL	1 µL	7.5 µL	10 µL

	DNA	EcoRI	XbaI	Buffer	BSA	MilliQ	total
9/7 Ptet-RBS-LacZα-DT (EcoRI & XbaI)	2.9 µL	1 µL	1 µL	3 µL	3 µL	18.5 µL	30 µL
NC	1.5 µL	0 µL	0 µL	1 µL	1 µL	7 µL	10 µL

Electrophoresis

No Name

Lane	Sample	Enzyme1	Enzyme2
1,14	100bp ladder
2	Pcon-RBS-tetR-DT	EcoRI	SpeI
3	Pcon-RBS-tetR-DT
4	Pcon-pT181 attenuator-DT	EcoRI	SpeI
5	Pcon-pT181 attenuator-DT
6	Pcon-apt12-1R-DT	EcoRI	SpeI
7	Pcon-apt12-1R-DT
8	Pcon-spinach-DT	EcoRI	SpeI
9	Pcon-spinach-DT
10	Pcon-pT181 antisense-spinach-DT	XbaI	PstI
11	Pcon-pT181 antisense-spinach-DT
12	RBS-lacZα-DT	XbaI	PstI
13	RBS-lacZα-DT
15	Ptet-RBS-lacZα-DT	EcoRI	XbaI
16	Ptet-RBS-lacZα-DT
17	1kbp ladder

Gel Extraction

No Name 1

Lane	DNA	Enzyme
1	100bp ladder
2~4	Pcon-pT181 attenuator-DT	EcoRI & SpeI
6~8	Pcon-apt12_1R-DT
10~12	Pcon-spinach-DT

2

Lane	DNA	Enzyme
1	100bp ladder
2~4	Pcon-pT181 anticodone-spinach-DT	XbaI & PstI
6~8	RBS-lacZα-DT	XbaI & PstI
10~12	Pcon-RBS-tetR-DT	EcoRI & SpeI

Name	concentration[µg/mL]	260/280	260/230
9/15 Ptet-RBS-lacZα-DT (EcoRI & SpeI)	1.9	1.08	0.77
9/15 Pcon-RBS-tetR-DT (EcoRI & SpeI)	5.9	1.30	0.17
9/15 RBS-lacZα-DT (XbaI & PstI)	1.0	0.85	0.44
Pcon-pT181 anticodone-spinach-DT (XbaI & PstI)	1.3	0.95	0.28
Pcon-spinach-DT	0.9	1.37	0.05
Pcon-apt12_1R-DT	1.7	1.42	0.29
Pcon-pT181 attenuator-DT (EcoRI & SpeI)	2.1	1.53	0.46

Ligation

No Name

state	Vector		Inserter		Ligation High ver.2
experiment	9/13 pSB1C3 EcoRI & SpeI	4.7 µL	9/15 Pcon-RBS-tetR-DT EcoRI & SpeI	1.9 µL	xx µL
experiment	9/13 pSB1C3 EcoRI & SpeI	4.7 µL	9/15 Pcon-spinach-DT EcoRI & SpeI	4.7 µL	xx µL
experiment	9/13 pSB1C3 EcoRI & SpeI	4.7 µL	9/15 Pcon-apt12_1R-DT EcoRI & SpeI	2.0 µL	xx µL
experiment	9/13 pSB1C3 EcoRI & SpeI	4.7 µL	9/15 Pcon-pT181 attenuator-DT EcoRI & SpeI	3.0 µL	xx µL
experiment	9/13 pSB1C3 XbaI & PstI	1.9 µL	9/15 Pcon-pT181 anticodone-spinach-DT XbaI & PstI	4.4 µL	xx µL
experiment	9/13 pSB1C3 EcoRI & SpeI	4.7 µL	9/3 pT181 attenuator EcoRI & SpeI	3.8 µL	xx µL
experiment	9/6 Pcon SpeI & PstI	1.4 µL	9/15 RBS-lacZα-DT XbaI & PstI	2.0 µL	xx µL
experiment	9/14 pSB 4k5 EcoRI & SpeI	µL	9/15 Pcon-spinach-DT EcoRI & SpeI	9.4 µL	xx µL
experiment	9/15 Peet-RBS-lacZα-DT EcoRI & XbaI	2.6 µL	Pcon-RBS-tetR-DT EcoRI & SpeI	1.5 µL	xx µL

Restriction Enzyme Digestion

No Name

	DNA	XbaI	PstI	Buffer	BSA	MilliQ	total
9/13 pT181 attenuator XbaI & PstI	6.3 µL	1 µL	1 µL	3 µL	3 µL	15.7 µL	30 µL
NC	0.3 µL	0 µL	0 µL	1 µL	1 µL	7.7 µL	10 µL

	DNA	EcoRI	SpeI	Buffer	BSA	MilliQ	total
9/10 pSB1C3 EcoRI & SpeI	8.1 µL	1 µL	1 µL	3 µL	3 µL	13.9 µL	30 µL
NC	0.4 µL	0 µL	0 µL	1 µL	1 µL	7.6 µL	10 µL

	DNA	XbaI	PstI	Buffer	BSA	MilliQ	total
9/14 pSB4k5 XbaI & PstI	9.5 µL	1 µL	1 µL	3 µL	3 µL	12.5 µL	30 µL
NC	0.5 µL	0 µL	0 µL	1 µL	1 µL	7.5 µL	10 µL

	DNA	SpeI	PstI	Buffer	BSA	MilliQ	total
9/11 DT SpeI & PstI	10.4 µL	1 µL	1 µL	3 µL	3 µL	11.6 µL	30 µL
NC	0.5 µL	0 µL	0 µL	1 µL	1 µL	7.5 µL	10 µL

	DNA	SpeI	PstI	Buffer	BSA	MilliQ	total
9/6 apt12_1R-DT SpeI & PstI	7.9 µL	1 µL	1 µL	3 µL	3 µL	14.1 µL	30 µL
NC	0.4 µL	0 µL	0 µL	1 µL	1 µL	7.6 µL	10 µL

	DNA	SpeI	PstI	Buffer	BSA	MilliQ	total
9/10 spinach-DT SpeI & PstI	9.9 µL	1 µL	1 µL	3 µL	3 µL	12.1 µL	30 µL
NC	0.5 µL	0 µL	0 µL	1 µL	1 µL	7.5 µL	10 µL

Liquid Culture

No name

Sample	medium
pSB1C3
DT
Spinach-DT

@@ Line 26: / Line 26: @@
 <!-- ここまでをコピーしてね -->
 ===Ligation===
-<!-- こっから -->
 <div class="experiment">
-<span class="author">じっけんしゃ</span>
+<span class="author">No name</span>
 {| class="wikitable"
 !state||colspan="2"|Vector||colspan="2"|Inserter||Ligation High ver.2
@@ Line 36: / Line 34: @@
 |}
 </div>
-<!-- ここまでをコピーしてね -->
 ===Restriction Enzyme Digestion===
 <!-- こっから -->
@@ Line 68: / Line 66: @@
 ! ||DNA||EcoRI||SpeI||Buffer||BSA||MilliQ||total
 |-
-|9/8 Pcon-spin-DT (EcoRI & SpeI)||7.6 &micro;L||1 &micro;L||1 &micro;L||3 &micro;L||3 &micro;L||15.4 &micro;L||30 &micro;L
+|9/8 Pcon-spinach-DT (EcoRI & SpeI)||7.6 &micro;L||1 &micro;L||1 &micro;L||3 &micro;L||3 &micro;L||15.4 &micro;L||30 &micro;L
 |-
 |NC||0.3 &micro;L||0 &micro;L||0 &micro;L||1 &micro;L||1 &micro;L||7.7 &micro;L||10 &micro;L
@@ Line 76: / Line 74: @@
 ! ||DNA||XbaI||PstI||Buffer||BSA||MilliQ||total
 |-
-|9/11 Pcon-pT181 anticodone-spin-DT(XbaI & PstI)||7.2 &micro;L||1 &micro;L||1 &micro;L||3 &micro;L||3 &micro;L||14.8 &micro;L||30 &micro;L
+|9/11 Pcon-pT181 anticodone-spinach-DT(XbaI & PstI)||7.2 &micro;L||1 &micro;L||1 &micro;L||3 &micro;L||3 &micro;L||14.8 &micro;L||30 &micro;L
 |-
 |NC||0.4 &micro;L||0 &micro;L||0 &micro;L||1 &micro;L||1 &micro;L||7.6 &micro;L||10 &micro;L
@@ Line 101: / Line 99: @@
 </div>
 <!-- ここまでをコピーしてね -->
 ===Electrophoresis===
@@ Line 109: / Line 108: @@
 !Lane||Sample||Enzyme1||Enzyme2
 |-
-|1,14 || || ||
+|1,14 ||100bp ladder|| ||
 |-
 |2 ||Pcon-RBS-tetR-DT ||EcoRI ||SpeI
@@ Line 123: / Line 122: @@
 |7 ||Pcon-apt12-1R-DT || ||
 |-
-|8 ||Pcon-spin-DT ||EcoRI ||SpeI
+|8 ||Pcon-spinach-DT ||EcoRI ||SpeI
 |-
-|9 ||Pcon-spin-DT || ||
+|9 ||Pcon-spinach-DT || ||
 |-
-|10 ||Pcon-pT181 antisense-spin-DT ||XbaI ||PstI
+|10 ||Pcon-pT181 antisense-spinach-DT ||XbaI ||PstI
 |-
-|11 ||Pcon-pT181 antisense-spin-DT || ||
+|11 ||Pcon-pT181 antisense-spinach-DT || ||
 |-
 |12 ||RBS-lacZ&alpha;-DT ||XbaI ||PstI
@@ Line 141: / Line 140: @@
 |17 ||1kbp ladder || ||
 |}
-[[File:igku_xxxxxx.xxx]]<br>
+[[File:igku_9151.jpg]]<br>
 </div>
 <!-- ここまでをコピーしてね -->
 ===Gel Extraction===
 <div class="experiment">
@@ Line 157: / Line 157: @@
 |6~8 ||Pcon-apt12_1R-DT ||
 |-
-|10~12 ||Pcon-spin-DT ||
+|10~12 ||Pcon-spinach-DT ||
 |}
+[[File:igku_9152.jpg]]<br>
+[[File:igku_9153.jpg]]<br>
 {| class="wikitable"
@@ Line 165: / Line 167: @@
 |1 ||100bp ladder ||
 |-
-|2~4 ||Pcon-pT181 anticodone-spin-DT ||XbaI & PstI
+|2~4 ||Pcon-pT181 anticodone-spinach-DT ||XbaI & PstI
 |-
 |6~8 ||RBS-lacZ&alpha;-DT ||XbaI & PstI
@@ Line 172: / Line 174: @@
 |}
-[[File:igku_xxbeforexx.xxx]]<br>
+[[File:igku_9154.jpg]]<br>
-[[File:igku_xxafterxx.xxx]]<br>
+[[File:igku_9155.jpg]]<br>
 {| class="wikitable"
 !Name||concentration[&micro;g/mL]||260/280||260/230
@@ Line 183: / Line 185: @@
 |9/15 RBS-lacZ&alpha;-DT (XbaI & PstI) ||1.0 ||0.85 ||0.44
 |-
-|Pcon-pT181 anticodone-spin-DT (XbaI & PstI) ||1.3 ||0.95 ||0.28
+|Pcon-pT181 anticodone-spinach-DT (XbaI & PstI) ||1.3 ||0.95 ||0.28
 |-
-|Pcon-spin-DT ||0.9 ||1.37 ||0.05
+|Pcon-spinach-DT ||0.9 ||1.37 ||0.05
 |-
 |Pcon-apt12_1R-DT ||1.7 ||1.42 ||0.29
@@ Line 192: / Line 194: @@
 |}
 </div>
 ===Ligation===
@@ Line 201: / Line 204: @@
 |experiment||9/13 pSB1C3 EcoRI & SpeI||4.7 &micro;L||9/15 Pcon-RBS-tetR-DT EcoRI & SpeI||1.9 &micro;L||xx &micro;L
 |-
-|experiment||9/13 pSB1C3 EcoRI & SpeI||4.7 &micro;L||9/15 Pcon-spin-DT EcoRI & SpeI||4.7 &micro;L||xx &micro;L
+|experiment||9/13 pSB1C3 EcoRI & SpeI||4.7 &micro;L||9/15 Pcon-spinach-DT EcoRI & SpeI||4.7 &micro;L||xx &micro;L
 |-
 |experiment||9/13 pSB1C3 EcoRI & SpeI||4.7 &micro;L||9/15 Pcon-apt12_1R-DT EcoRI & SpeI||2.0 &micro;L||xx &micro;L
@@ Line 207: / Line 210: @@
 |experiment||9/13 pSB1C3 EcoRI & SpeI||4.7 &micro;L||9/15 Pcon-pT181 attenuator-DT EcoRI & SpeI||3.0 &micro;L||xx &micro;L
 |-
-|experiment||9/13 pSB1C3 XbaI & PstI||1.9 &micro;L||9/15 Pcon-pT181 anticodone-spin-DT XbaI & PstI||4.4 &micro;L||xx &micro;L
+|experiment||9/13 pSB1C3 XbaI & PstI||1.9 &micro;L||9/15 Pcon-pT181 anticodone-spinach-DT XbaI & PstI||4.4 &micro;L||xx &micro;L
 |-
 |experiment||9/13 pSB1C3 EcoRI & SpeI||4.7 &micro;L||9/3 pT181 attenuator EcoRI & SpeI||3.8 &micro;L||xx &micro;L
@@ Line 213: / Line 216: @@
 |experiment||9/6 Pcon SpeI & PstI||1.4 &micro;L||9/15 RBS-lacZ&alpha;-DT XbaI & PstI||2.0 &micro;L||xx &micro;L
 |-
-|experiment||9/14 pSB 4k5 EcoRI & SpeI|| &micro;L||9/15 Pcon-spin-DT EcoRI & SpeI||9.4 &micro;L||xx &micro;L
+|experiment||9/14 pSB 4k5 EcoRI & SpeI|| &micro;L||9/15 Pcon-spinach-DT EcoRI & SpeI||9.4 &micro;L||xx &micro;L
 |-
 |experiment||9/15 Peet-RBS-lacZ&alpha;-DT EcoRI & XbaI||2.6 &micro;L||Pcon-RBS-tetR-DT EcoRI & SpeI||1.5 &micro;L||xx &micro;L
 |-
+|}
+</div>
+===Restriction Enzyme Digestion===
+<div class="experiment">
+<span class="author">No Name</span>
+{| class="wikitable"
+! ||DNA||XbaI||PstI||Buffer||BSA||MilliQ||total
+|-
+|9/13 pT181 attenuator XbaI & PstI||6.3 &micro;L||1 &micro;L||1 &micro;L||3 &micro;L||3 &micro;L||15.7 &micro;L||30 &micro;L
+|-
+|NC||0.3 &micro;L||0 &micro;L||0 &micro;L||1 &micro;L||1 &micro;L||7.7 &micro;L||10 &micro;L
+|}
+{| class="wikitable"
+! ||DNA||EcoRI||SpeI||Buffer||BSA||MilliQ||total
+|-
+|9/10 pSB1C3 EcoRI & SpeI||8.1 &micro;L||1 &micro;L||1 &micro;L||3 &micro;L||3 &micro;L||13.9 &micro;L||30 &micro;L
+|-
+|NC||0.4 &micro;L||0 &micro;L||0 &micro;L||1 &micro;L||1 &micro;L||7.6 &micro;L||10 &micro;L
+|}
+{| class="wikitable"
+! ||DNA||XbaI||PstI||Buffer||BSA||MilliQ||total
+|-
+|9/14 pSB4k5 XbaI & PstI||9.5 &micro;L||1 &micro;L||1 &micro;L||3 &micro;L||3 &micro;L||12.5 &micro;L||30 &micro;L
+|-
+|NC||0.5 &micro;L||0 &micro;L||0 &micro;L||1 &micro;L||1 &micro;L||7.5 &micro;L||10 &micro;L
+|}
+{| class="wikitable"
+! ||DNA||SpeI||PstI||Buffer||BSA||MilliQ||total
+|-
+|9/11 DT SpeI & PstI||10.4 &micro;L||1 &micro;L||1 &micro;L||3 &micro;L||3 &micro;L||11.6 &micro;L||30 &micro;L
+|-
+|NC||0.5 &micro;L||0 &micro;L||0 &micro;L||1 &micro;L||1 &micro;L||7.5 &micro;L||10 &micro;L
+|}
+{| class="wikitable"
+! ||DNA||SpeI||PstI||Buffer||BSA||MilliQ||total
+|-
+|9/6 apt12_1R-DT SpeI & PstI||7.9 &micro;L||1 &micro;L||1 &micro;L||3 &micro;L||3 &micro;L||14.1 &micro;L||30 &micro;L
+|-
+|NC||0.4 &micro;L||0 &micro;L||0 &micro;L||1 &micro;L||1 &micro;L||7.6 &micro;L||10 &micro;L
+|}
+{| class="wikitable"
+! ||DNA||SpeI||PstI||Buffer||BSA||MilliQ||total
+|-
+|9/10 spinach-DT SpeI & PstI||9.9 &micro;L||1 &micro;L||1 &micro;L||3 &micro;L||3 &micro;L||12.1 &micro;L||30 &micro;L
+|-
+|NC||0.5 &micro;L||0 &micro;L||0 &micro;L||1 &micro;L||1 &micro;L||7.5 &micro;L||10 &micro;L
+|}
+</div>
+===Liquid Culture===
+<div class="experiment">
+<span class="author">No name</span>
+{| class="wikitable"
+!Sample||medium
+|-
+|pSB1C3 ||
+|-
+|DT ||
+|-
+|Spinach-DT ||
 |}
 </div>

Template:Kyoto/Notebook/Sep 15

From 2013.igem.org

Latest revision as of 00:39, 27 September 2013

Contents

Sep 15

Miniprep

Liquid Culture

Ligation

Restriction Enzyme Digestion

Electrophoresis

Gel Extraction

Ligation

Restriction Enzyme Digestion

Liquid Culture