Template:Kyoto/Notebook/Sep 6

From 2013.igem.org

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==Sep 6==
==Sep 6==
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[[File:Igku_Notebook_Sep6_1.jpg]]
 
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===Electrophoresis===
===Electrophoresis===
<div class="experiment">
<div class="experiment">
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|8||100bp ladder
|8||100bp ladder
|}
|}
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[[File:igku_xxxxxx.xxx]]<br>
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[[File:Igku Sep6 ColonyPCRN1.jpg]]<br>
</div>
</div>
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===Colony PCR===
===Colony PCR===
<div class="experiment">
<div class="experiment">
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|5min||30s||30s||40s||30cycles
|5min||30s||30s||40s||30cycles
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[[File:igku_Sep6_ColonyPCR_n2_1b.jpg]]<br>
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|13||Pcon-pT181 antisense -(4)
|13||Pcon-pT181 antisense -(4)
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{| class="wikitable"
{| class="wikitable"
!Lane||Sample
!Lane||Sample
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|9||Plac-pT181 attenuator -(4)
|9||Plac-pT181 attenuator -(4)
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|}
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[[File:Igku_xxxxxx.xxx]]
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[[File:igku_Sep6_COlonyPCRN1_1a.jpg]]<br>
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[[File:igku_Sep6_colonyPCR_N2_1b.jpg]]<br>
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</div>
===Miniprep===
===Miniprep===
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|11||100bp ladder
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|3
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{| class="wikitable"
{| class="wikitable"
!Name||concentration[&micro;g/mL]||260/280||260/230
!Name||concentration[&micro;g/mL]||260/280||260/230
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|P&lambda;-luxI (EcoRI & SpeI)||4.5||1.79||0.31
|P&lambda;-luxI (EcoRI & SpeI)||4.5||1.79||0.31
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[[File:igku_Sep6_gel_extraction_N5_1.jpg]]<br>
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!Sample||medium
!Sample||medium
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|9/5　Pconst-spinach-DT-(1)||Plusgrow medium(+Amp&CP)
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|9/5 Pconst-spinach-DT-(1)||Plusgrow medium(+Amp&CP)
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|9/5　Ptet-pT181 antisense-(1)||Plusgrow medium(+CP)
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|9/5 Ptet-pT181 antisense-(1)||Plusgrow medium(+CP)
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|9/5　Pconst+RBS-tetR-DT-(1)||Plusgrow medium(+Amp&CP)
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|9/5 Pconst+RBS-tetR-DT-(1)||Plusgrow medium(+Amp&CP)
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|9/5　Ptet+RBS-lacZ&alpha;-DT-(1)||Plusgrow medium(+CP)
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|9/5 Ptet+RBS-lacZ&alpha;-DT-(1)||Plusgrow medium(+CP)
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|9/5　Pcon-pT181 attenuator-(1)||Plusgrow medium(+CP)
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|9/5 Pcon-pT181 attenuator-(1)||Plusgrow medium(+CP)
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|9/4　pT181 antisense-(1)||Plusgrow medium(+CP)
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|9/4 pT181 antisense-(1)||Plusgrow medium(+CP)
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|9/4　aptamer 12_1R-(1)||Plusgrow medium(+CP)
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|9/4 aptamer 12_1R-(1)||Plusgrow medium(+CP)
|}
|}
</div>
</div>

Latest revision as of 03:56, 28 September 2013

Contents

Sep 6

Electrophoresis

Hirano

LaneSample
1100bp ladder
29/4 RBS-lysis3-DT -3
39/4 RBS-lysis3-DT -4
49/4 RBS-lysis3-DT -5
59/4 RBS-lysis1-DT -3
69/4 Ptrc-KaiC -1
79/4 pSB4K5 -1
8100bp ladder

Igku Sep6 ColonyPCRN1.jpg

Colony PCR

No name

Samplebase pair
Pconst-spinach-DT-(1~4)563
Plac-spinach-DT-(1~4)659
Pcon-pT181 antisense-(1~4)468
Ptet-pT181 antisense-(1~4)604
Pconst-pT181 attenuator-(1~4)568
Pconst+RBS-tetR-DT-(1~4)1121
Ptet+RBS-lacZα-DT-(1~4)1162
PreDenatureDenatureAnnealingExtensioncycle
94°C94°C55°C68°C--
5min30s30s40s30cycles

Liquid Culture

No name

Samplemedium
9/4 RBS-Lysis3+DT3Plusgrow medium(+CP)
9/4 RBS-Lysis1+DT3Plusgrow medium(+CP)
9/4 pSB4K5Plusgrow medium(+Kan)

Electrophoresis

No name

LaneSample
1100bp ladder
2Pconst-spinach-DT -(1)
3Pconst-spinach-DT -(2)
4Pconst-spinach-DT -(3)
5Pconst-spinach-DT -(4)
6Plac-spinach-DT -(1)
7Plac-spinach-DT -(2)
8Plac-spinach-DT -(3)
9Plac-spinach-DT -(4)
10Pcon-pT181 antisense -(1)
11Pcon-pT181 antisense -(2)
12Pcon-pT181 antisense -(3)
13Pcon-pT181 antisense -(4)
LaneSample
1100bp ladder
2Ptet-pT181 antisense -(1)
3Ptet-pT181 antisense -(2)
4Ptet-pT181 antisense -(3)
5Ptet-pT181 antisense -(4)
6Plac-pT181 attenuator -(1)
7Plac-pT181 attenuator -(2)
8Plac-pT181 attenuator -(3)
9Plac-pT181 attenuator -(4)

Igku Sep6 COlonyPCRN1 1a.jpg
Igku Sep6 colonyPCR N2 1b.jpg

Miniprep

Honda and Kojima

DNAconcentration [µg/mL]260/280260/230
pT181 antisense-(1)238.71.681.44
pT181 antisense-(2)248.81.831.77
pT181 antisense-(3)223.21.781.61
pT181 antisense-(4)220.81.891.92
tetR aptamer-(1)252.51.891.90
tetR aptamer-(2)211.21.901.99
DT181 attenuator102.21.982.17
121R aptamer-DT251.71.922.01
pSB4K5212.91.801.90
RBS-lacZα-DT185.71.781.79
RBS-lysis2-DT-(1)84.81.852.24

Restriction Enzyme Digestion

Tatsui

9/6 RBS-lysis2-DT (78.3 µg/mL)XbaIPstIBSABufferMilliQtotal
2 cuts22 µL1 µL1 µL3 µL3 µL0 µL30 µL
NC1.3 µL0 µL0 µL1 µL1 µL6.7 µL10 µL
aptamer-DT (251.7 µg/mL)XbaIPstIBSABufferMilliQtotal
2 cuts0.4 µL1 µL1 µL3 µL3 µL14.1 µL30 µL
NC0.4 µL0 µL0 µL1 µL1 µL7.6 µL10 µL
Pλ-luxI (86.4 µg/mL)EcoRISpeIBSABufferMilliQtotal
2 cuts23.1 µL1 µL1 µL3 µL3 µL1.9 µL30 µL
NC1.2 µL0 µL0 µL1 µL1 µL6.8 µL10 µL
  • at 37 °C, for 1h

Electrophoresis

Hirano

LaneSample
1100bp ladder
2Pconst+RBS-tetR-DT -(1)
3Pconst+RBS-tetR-DT -(2)
4Pconst+RBS-tetR-DT -(3)
5Pconst+RBS-tetR-DT -(4)
6Ptet+RBS-lacZα-DT -(1)
7Ptet+RBS-lacZα-DT -(2)
8100bp ladder
9Ptet+RBS-lacZα-DT -(3)
10Ptet+RBS-lacZα-DT -(4)
11100bp ladder

Igku Sep6 electrophoresis N3.jpg

Gel Extraction

No name

LaneDNAEnzyme
1100bp ladder--
2RBS-lysis2-DTXbaI & PstI
3
4----
5aptamer 12_1R-DTXbaI & PstI
6
LaneDNAEnzyme
1100bp ladder--
2Pλ-luxIEcoRI & SpeI
3

Igku Sep6 gel extraction N4 2.jpg
Igku Sep6 gel extraction N4 3.jpg

Nameconcentration[µg/mL]260/280260/230
RBS-lysis2-DT (XbaI & PstI)7.11.880.07
aptamer 12_1R-DT (XbaI & PstI)15.31.930.70
Pλ-luxI (EcoRI & SpeI)4.51.790.31

Igku Sep6 gel extraction N5 1.jpg
Igku Sep6 gel extraction N5 2.jpg

Liquid Culture

No name

Samplemedium
9/5 Pconst-spinach-DT-(1)Plusgrow medium(+Amp&CP)
9/5 Ptet-pT181 antisense-(1)Plusgrow medium(+CP)
9/5 Pconst+RBS-tetR-DT-(1)Plusgrow medium(+Amp&CP)
9/5 Ptet+RBS-lacZα-DT-(1)Plusgrow medium(+CP)
9/5 Pcon-pT181 attenuator-(1)Plusgrow medium(+CP)
9/4 pT181 antisense-(1)Plusgrow medium(+CP)
9/4 aptamer 12_1R-(1)Plusgrow medium(+CP)

Colony PCR

No name

Samplebase pair
9/5 Plac-spinach-DT-(5~12)563
9/5 Pcon-antisense-(5~12)468
9/5 Plac-attenuator-(5~12)664
9/5 pT181 antisense+Plac-(1)-
PreDenatureDenatureAnnealingExtensioncycle
94°C94°C55°C68°C--
5min30s30s42s30cycles
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