Team:SUSTC-Shenzhen-B/achievement.html

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<h2 id="introduction">Introduction</h2>
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<h3>Mind Road</h3>
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<p>A useful net structural mind map to help users know what the existing synthetic biology projects and what else they can do.</p>
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<h3>LGD</h3>
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<p>Short for logical genetic designer, LGD is a genetic circuit CAD that can present the detail information of the engineering bacteria and “calculate” the relationship of related parts based on our database.</p>
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<h3>TTEC</h3>
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<p>TTEC is the abbreviation of Transcriptional Terminator Efficiency Calculator. It is the last year’s project of SUSTC and can calculate the efficiency of a terminator. TTEC plays an important role of building up our synthetic biology community in the future.</p>
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<h2 id="circuit">Circuit Registry</h2>
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                                        <h4>Mind Road</h4>
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<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
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<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
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<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
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<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
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<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
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<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
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<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
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<h2 id="achievement">Achievement</h2>
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<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
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            <h1 class="ui dividing header">Achievement</h1>
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            <p class="lead">Below are requirements and our achievements.</p>
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          <a class="active item">Bronze Medal requiement</a>
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          <a class="item">Silver Medal requirement</a>
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          <a class="item">Gold Medal requirement</a>
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          <a class="active item" href="/Team:SUSTC-Shenzhen-B">Back to Homepage</a>
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        <h2 class="ui dividing header">Bronze Medal requirement</h2>
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        <section id="motivation"></section>
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              <th class="eight wide">Requirement</th>
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              <th class="eight wide">Achievement</th>
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                  1.Register the team, have a great summer, and have fun attending the Jamboree.
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                </td>
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                <td>
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                  We really enjoyed the whole summer of learning, coding, debating and laghing. You can also see our <a href="about.html">about</a> us page of wiki.
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                </td>
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                  2.Create and share a description of the team's project via the iGEM wiki.
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                </td>
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                <td>
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                  Thank you for watching our wiki now!
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              </tr>
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              <tr>
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                <td>
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                  3.Present a Poster and Talk at the iGEM Jamboree.
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                <td>
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                  Believe us, we will do it!
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                </td>
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              </tr>
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              <tr>
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                <td>
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                  4.Develop and make available via The Registry of Software Toolsan open source software tool that supports synthetic biology based on-BioBrick standard biological parts (remember, the iGEM judges will be looking for substantial team-based software projects).
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                <td>
 +
                  our software is open source and all the code has already upload to github, you may clone it by <a href="https://github.com/hejiankui/biocommunity-circuitsregistry.git">GitHub~</a>. allright it is also based on standard biobricks. check it out in our <a href="http://circuitplus.org/">software</a>!
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          </tbody>
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        <h2 class="ui dividing header">Silver Medal requirement</h2>
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        <section id="motivation"></section>
 +
        <p>To earn a Silver Medal, in addition to the Bronze Medal requirements, a team must :</p>
 +
        <table class="ui five column table segment">
 +
          <thead>
 +
            <tr>
 +
              <th class="eight wide">Requirement</th>
 +
              <th class="eight wide">Achievement</th>
 +
            </tr>
 +
          </thead>
 +
          <tbody>
 +
              <tr>
 +
                <td>
 +
                  1a. Provide a detailed, draft specification for the next version of your software tool
 +
                </td>
 +
                <td>
 +
                  See <a href="future.html" target="_blank">future</a> part of this wiki.
 +
                </td>
 +
              </tr>
 +
              <tr>
 +
                <td>
 +
                  <b>OR</b><br/> 
 +
                  1b. Provide a second, distinct (yet complementary) software tools project.
 +
                </td>
 +
                <td>
 +
                  Our main primary software project is Circuit+, an genetic circuit database and registry.<br/>
 +
                  As well, we have put <a href="clotho.html" target="_blank">Circuit List</a>, which is Clotho verion of Circuit+.<br/>
 +
                  Also we developed the Synthetic Biology Laboratory Manager, for the management of synthetic biology lab, such as our wet team
 +
                </td>
 +
              </tr>
 +
              <tr>
 +
                <td>
 +
                  2.Provide a demonstration of their software either as a textual or video tutorial made available on their wiki. This tutorial should explain all the features of the tool as well as provide sample input and output as appropriate.
 +
                <td>
 +
                  See <a href="tutorial.html" target="_blank">tutorial</a> part of this wiki.
 +
                </td>
 +
              </tr>
 +
          </tbody>
 +
        </table>
 +
        <h2 class="ui dividing header">Glod Medal requirement</h2>
 +
        <section id="motivation"></section>
 +
        <p>To earn a Gold Medal, in addition to the Silver Medal requirements, a team must:</p>
 +
        <table class="ui five column table segment">
 +
          <thead>
 +
            <tr>
 +
              <th class="eight wide">Requirement</th>
 +
              <th class="eight wide">Achievement</th>
 +
            </tr>
 +
          </thead>
 +
          <tbody>
 +
              <tr>
 +
                <td>
 +
                1. Have another team utilized the software developed by your team. You must clearly show how your software was used and the results that were obtained?
 +
                </td>
 +
                <td>
 +
                The SUSTC-Shenzhen-A has used our LGD in designing their own circuits. see their wiki for how they are using our software: <a href="https://2013.igem.org/Team:SUSTC-Shenzhen-A/Project">Team A</a>.
 +
                <br>
 +
                The Tsinghua-E team has used our software for brainstorming. They trained they freshman students using circuitplus, and they told us that circuitplus is very informatic, and they will continue use it in future. Meanwhile, they propose that they can develop circuitplus 2.0 in collaborating with us.
 +
                <br>
 +
                Team Peking, team HKUST, team CUHK and team Macquarie_Australia also used our software, see their feedback here:<a href="">feedback</a>.
 +
                </td>
 +
              </tr>
 +
              <tr>
 +
                <td>
 +
                2a. Outline and detail how your software effects Human Practices in Synthetic Biology. Such topics include: safety, security, ethics, or ownership, sharing, and innovation.
 +
                </td>
 +
                <td>
 +
                  One of the key points of Circuit+ is to promote <b>sharing gene circuits</b>. And using Mindmap, we can popularize synthetic biology from specialists to average people by asking them thinking of crazy ideas and put them on Mindmap. Meanwhile, using Mindmap to present circuits is one kind of innovation. So <b>Sharing is what we hope to push heigher</b> in synthetic biology. You can nearly <b>share</b> every thing while working for synthetic biology via circuit+ !!!
 +
                </td>
 +
              </tr>
 +
              <tr>
 +
                <td>
 +
                <b>OR</b><br/>
 +
                2b. In place of requirement two, a team may instead use SBOL in your software documentation.
 +
                <td>
 +
                  Circuit+ supports importing and exporting data in form of SBOL. <a href="http://circuitplus.org/circuit/get/sbol/CCt_P130001">here is an example</a>
 +
                </td>
 +
              </tr>
 +
              <tr>
 +
                <td>
 +
                3a. Develop and document a new technical standard that supports one of the following: 1. design of BioBrick Parts or Devices; 2.  construction of BioBrick Parts or Devices; 3.  characterization of BioBrick Parts or Devices; 4. the analysis, modeling, and simulation of BioBrick Parts or Devices; 5. the sharing of BioBrick Parts or Devices, either via physical DNA or as information via the internet.
 +
                <td>
 +
                  We have two technical standards <a href="https://static.igem.org/mediawiki/2013/5/55/BBF_RFC101_Logic_Gene_Module_Standard_.pdf">RFC101</a> <a href="https://static.igem.org/mediawiki/2013/4/45/BBF_RFC_97-Genetic_Circuit_Standard_%28version_2.0%29.pdf">RFC97</a>to define gene circuits and logical gene gate.
 +
                </td>
 +
              </tr>
 +
              <tr>
 +
                <td>
 +
                <b>OR</b> <br/>
 +
                3b. Build upon existing software from a previous iGEM competition found on the The Registry of Software Tools
 +
                <td>
 +
                  This year we put TTEC into Clotho. TTEC is last year’s project of SUSTC-Shenzhen-B, and we made it available in the Clotho platform.
 +
                </td>
 +
              </tr>
 +
          </tbody>
 +
        </table>
 +
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 +
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          &copy; SUSTC-ShenZhen-B
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Latest revision as of 03:56, 29 October 2013

SUSTC-ShenZhen-B

SUSTC-ShenZhen-B
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Achievement

Below are requirements and our achievements.

Bronze Medal requiement Silver Medal requirement Gold Medal requirement Back to Homepage

Bronze Medal requirement

Requirement Achievement
1.Register the team, have a great summer, and have fun attending the Jamboree. We really enjoyed the whole summer of learning, coding, debating and laghing. You can also see our about us page of wiki.
2.Create and share a description of the team's project via the iGEM wiki. Thank you for watching our wiki now!
3.Present a Poster and Talk at the iGEM Jamboree. Believe us, we will do it!
4.Develop and make available via The Registry of Software Toolsan open source software tool that supports synthetic biology based on-BioBrick standard biological parts (remember, the iGEM judges will be looking for substantial team-based software projects). our software is open source and all the code has already upload to github, you may clone it by GitHub~. allright it is also based on standard biobricks. check it out in our software!

Silver Medal requirement

To earn a Silver Medal, in addition to the Bronze Medal requirements, a team must :

Requirement Achievement
1a. Provide a detailed, draft specification for the next version of your software tool See future part of this wiki.
OR
1b. Provide a second, distinct (yet complementary) software tools project. 		Our main primary software project is Circuit+, an genetic circuit database and registry.
As well, we have put Circuit List, which is Clotho verion of Circuit+.
Also we developed the Synthetic Biology Laboratory Manager, for the management of synthetic biology lab, such as our wet team
2.Provide a demonstration of their software either as a textual or video tutorial made available on their wiki. This tutorial should explain all the features of the tool as well as provide sample input and output as appropriate. See tutorial part of this wiki.

Glod Medal requirement

To earn a Gold Medal, in addition to the Silver Medal requirements, a team must:

Requirement Achievement
1. Have another team utilized the software developed by your team. You must clearly show how your software was used and the results that were obtained? The SUSTC-Shenzhen-A has used our LGD in designing their own circuits. see their wiki for how they are using our software: Team A.
The Tsinghua-E team has used our software for brainstorming. They trained they freshman students using circuitplus, and they told us that circuitplus is very informatic, and they will continue use it in future. Meanwhile, they propose that they can develop circuitplus 2.0 in collaborating with us.
Team Peking, team HKUST, team CUHK and team Macquarie_Australia also used our software, see their feedback here:feedback.
2a. Outline and detail how your software effects Human Practices in Synthetic Biology. Such topics include: safety, security, ethics, or ownership, sharing, and innovation. One of the key points of Circuit+ is to promote sharing gene circuits. And using Mindmap, we can popularize synthetic biology from specialists to average people by asking them thinking of crazy ideas and put them on Mindmap. Meanwhile, using Mindmap to present circuits is one kind of innovation. So Sharing is what we hope to push heigher in synthetic biology. You can nearly share every thing while working for synthetic biology via circuit+ !!!
OR
2b. In place of requirement two, a team may instead use SBOL in your software documentation. 		Circuit+ supports importing and exporting data in form of SBOL. here is an example
3a. Develop and document a new technical standard that supports one of the following: 1. design of BioBrick Parts or Devices; 2. construction of BioBrick Parts or Devices; 3. characterization of BioBrick Parts or Devices; 4. the analysis, modeling, and simulation of BioBrick Parts or Devices; 5. the sharing of BioBrick Parts or Devices, either via physical DNA or as information via the internet. We have two technical standards RFC101 RFC97to define gene circuits and logical gene gate.
OR
3b. Build upon existing software from a previous iGEM competition found on the The Registry of Software Tools 		This year we put TTEC into Clotho. TTEC is last year’s project of SUSTC-Shenzhen-B, and we made it available in the Clotho platform.
© SUSTC-ShenZhen-B

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