Team:DTU-Denmark/Attributions

From 2013.igem.org

(Difference between revisions)
(→30px Thomas Trolle)
(→Graphics)
 
(67 intermediate revisions not shown)
Line 1: Line 1:
{{:Team:DTU-Denmark/Templates/StartPage|Attributions}}
{{:Team:DTU-Denmark/Templates/StartPage|Attributions}}
-
__NOTOC__
 
-
<div class="overviewPage">
 
-
<div class="overviewBox left">
 
-
 
== Work done by the team ==
== Work done by the team ==
-
 
+
<hr/>
===== [[File:Poland_Flag.gif|30px]] Katarzyna Chyzynska =====
===== [[File:Poland_Flag.gif|30px]] Katarzyna Chyzynska =====
-
* Performed [[Team:DTU-Denmark/Experiments|validation experiments]]
+
* Performed [[Team:DTU-Denmark/Experiments|characterization and verification experiments]]
 +
* Designed our poster
 +
* Participated in high school outreach and the Biobrick workshop
===== [[File:Canada_Flag.jpg|30px]] Helen Cook =====
===== [[File:Canada_Flag.jpg|30px]] Helen Cook =====
-
* Performed [[Team:DTU-Denmark/Experiments|validation experiments]]
+
* Performed and analyzed data from the [[Team:DTU-Denmark/Experiments|characterization and verification experiments]]
 +
* Created the diagrams describing our project
 +
* Participated in high school outreach, Biobrick workshop and the discussion on IP and synthetic biology.
===== [[File:Denmark_Flag.gif|30px]] Kristian Davidsen =====
===== [[File:Denmark_Flag.gif|30px]] Kristian Davidsen =====
* Lead user cloning work in the 208 lab; designed primers
* Lead user cloning work in the 208 lab; designed primers
-
* Constructed the [[Team:DTU-Denmark/pBAD_SPL pBAD_SPL]]
+
* Constructed the [[Team:DTU-Denmark/pBAD_SPL|pBAD_SPL]]
* Found sponsors and funding
* Found sponsors and funding
 +
* Starred in our [https://www.youtube.com/watch?v=7EiVttJpXH4 bricks of knowledge video on USER cloning]
 +
* Participated in high school outreach and the Biobrick workshop
===== [[File:Greece_Flag.jpg|30px]] Ariadni Droumpali =====
===== [[File:Greece_Flag.jpg|30px]] Ariadni Droumpali =====
-
* Performed [[Team:DTU-Denmark/Experiments|validation experiments]]
+
* Performed [[Team:DTU-Denmark/Experiments|characterization and verification experiments]]
 +
* Participated in high school outreach, Biobrick workshop and the discussion on IP and synthetic biology.
===== [[File:Poland_Flag.gif|30px]] Piotr Dworzynski =====
===== [[File:Poland_Flag.gif|30px]] Piotr Dworzynski =====
-
* Simulation of [[Team:DTU-Denmark/HelloWorld GFP in the periplasm]] for Hello World project
+
* Simulation of [[Team:DTU-Denmark/HelloWorld|GFP in the periplasm]] for Hello World project
-
===== [[File:Poland_Flag.gif|30px]] Gosia Futyma =====
+
===== [[File:Poland_Flag.gif|30px]] Malgorzata Futyma =====
* USER cloning and other work in 208 lab
* USER cloning and other work in 208 lab
 +
* Drew pictures for our banner and the slideshow in the front page
 +
* Participated in high school outreach and the Biobrick workshop
===== [[File:Denmark_Flag.gif|30px]] Jakob Berg Jespersen =====
===== [[File:Denmark_Flag.gif|30px]] Jakob Berg Jespersen =====
Line 31: Line 36:
* Designed our t-shirts and business cards
* Designed our t-shirts and business cards
* Found sponsors and funding
* Found sponsors and funding
 +
* Participated in high school outreach and the Biobrick workshop
===== [[File:Germany_Flag.gif|30px]] Vanessa Jurtz =====
===== [[File:Germany_Flag.gif|30px]] Vanessa Jurtz =====
* Modeled [[Team:DTU-Denmark/Kinetic_Model|kinetics of our reactions]]
* Modeled [[Team:DTU-Denmark/Kinetic_Model|kinetics of our reactions]]
* Modeled a [[Team:DTU-Denmark/Reactor_Model|continuous flow reactor]]
* Modeled a [[Team:DTU-Denmark/Reactor_Model|continuous flow reactor]]
 +
* Participated in high school outreach and the Biobrick workshop
===== [[File:Greece_Flag.jpg|30px]] Anastasia Mourka =====
===== [[File:Greece_Flag.jpg|30px]] Anastasia Mourka =====
* Wiki design and implementation
* Wiki design and implementation
 +
* Participated in the discussion on IP and synthetic biology.
===== [[File:Greece_Flag.jpg|30px]] Natalia Papargyri =====
===== [[File:Greece_Flag.jpg|30px]] Natalia Papargyri =====
-
* Responsible for our [[Team:DTU-Denmark/Safety safety]] form and section
+
* Responsible for our [[Team:DTU-Denmark/Safety|safety]] form and section
 +
* Participated in high school outreach and the Biobrick workshop
===== [[File:Italy_Flag.png|30px]] Julia Villarroel =====
===== [[File:Italy_Flag.png|30px]] Julia Villarroel =====
-
* USER cloning
+
* USER cloning in 208 lab
-
 
+
* Participated in high school outreach and the Biobrick workshop
===== [[File:Germany_Flag.gif|30px]] Henrike Zschach =====
===== [[File:Germany_Flag.gif|30px]] Henrike Zschach =====
 +
* USER cloning in the 208 lab
 +
* Participated in high school outreach, Biobrick workshop and the discussion on IP and synthetic biology.
-
== Work done by our supervisors ==
+
== Assistance provided by our supervisors ==
 +
<hr/>
 +
===== [[File:USA_Flag.png|30px]] Chris Workman (PI)=====
 +
* Provided perl and R scripts to analyze raw biolector data
 +
* Provided lab space for us to work in (building 208)
-
===== [[File:USA_Flag.png|30px]] Chris Workman (PI)=====
 
===== [[File:Flag_of_Belgium.svg.png|30px]] Barth Smets =====
===== [[File:Flag_of_Belgium.svg.png|30px]] Barth Smets =====
 +
* Provided the idea for our project
 +
* Provided lab space for us to work in (building 115)
-
== Advisors ==
+
== Assistance provided by our advisors ==
<hr/>
<hr/>
-
{|border="0" cellspacing="30"
 
-
 
-
<html>
 
-
  <span class="mw-headline" id="Thomas_Trolle"></span><br><br>
 
-
<img style="float: right;" src="https://static.igem.org/mediawiki/2013/1/1f/Dtu_thomas.jpeg"></img>
 
-
<div style="display: table; height: 300px;">
 
-
  <div style="display: table-cell; vertical-align: middle;">
 
-
</html>
 
===== [[File:Denmark_Flag.gif|30px]] Thomas Trolle =====
===== [[File:Denmark_Flag.gif|30px]] Thomas Trolle =====
-
I am currently a PhD student at the Center for Biological Sequence Analysis (CBS) at DTU, working within the field of immunoinformatics. I have a passion for molecular biology, bioinformatics and immunology. I was part of the 2010 DTU iGEM team, which gave me a lot of experience planning a project from start to finish, as well as in depth experience with a variety of molecular biology techniques, both wet lab and in silico.
+
* Provided early advice on the design of the pBAD SPL
-
 
+
* Helped during the BioBrick workshop
-
<html>
+
-
  </div>
+
-
</div>
+
-
</html>
+
-
 
+
-
<html>
+
-
  <span class="mw-headline" id="Anne_Mathilde_Lund"></span><br><br>
+
-
<img style="float: left; height: 200px;" src="https://static.igem.org/mediawiki/2013/f/ff/Dtu_mathilde.jpg"></img>
+
-
<div style="display: table; height: 300px;">
+
-
  <div style="display: table-cell; vertical-align: middle;">
+
-
</html>
+
===== [[File:Denmark_Flag.gif|30px]] Anne Mathilde Lund =====
===== [[File:Denmark_Flag.gif|30px]] Anne Mathilde Lund =====
-
Anne is currently a PhD student at Technical University of Denmark performing system-wide studies of cell biology of CHO cells. She did her Bsc. and Msc. studies in Biotechnology at DTU, too and has a great experience in molecular biology. She was part of the DTU team with the the project "Plug 'n' Play with DNA" at the iGem competition in 2011.
+
* Generously provided us with X7 polymerase and assistance with debugging PCR reactions
-
<html>
+
* Arranged all experiments under the BioBrick workshop
-
  </div>
+
* Great help with primer design for USER cloning as with introduction on how to use the gradient PCR-machine ([https://2013.igem.org/Team:DTU-Denmark/Notebook/13_August_2013 link to notebook])
-
</div>
+
* Helped in "hard to amplify" PCR situations
-
</html>
+
-
 
+
-
<html>
+
-
<img style="float: right; height: 200px;" src="https://static.igem.org/mediawiki/2013/6/6e/Dtu-andreas.png"></img>
+
-
<div style="display: table; height: 300px;">
+
-
  <div style="display: table-cell; vertical-align: middle;">
+
-
</html>
+
===== [[File:Denmark_Flag.gif|30px]] Andreas Porse =====
===== [[File:Denmark_Flag.gif|30px]] Andreas Porse =====
-
I am a master student with a broad (and deep) interest in biotechnological research, which is why I use most of my spare time in the lab. My main interests are in the fields of (medical) microbial biotechnology, biodiversity and bioinformatics, although I’m always curious about getting new angles or using an array of scientific disciplines if relevant in solving an interesting problem. Therefore I love to help out in ambitious projects were many aspects of biology are involved, and where I might be able to contribute with my relevant experience - which is why I appreciate my role in this iGEM project.
+
* Reviewed our initial plan and provided insight into ''E. coli'' specific signal peptides
-
<html>  </div></div> </html>
+
* Assisted in primer design for USER cloning i the "Hello World project"
 +
* General questions about sequencing, PCR, lab techniques etc.
-
<html>
 
-
  <span class="mw-headline" id="Julie_Rank"></span><br><br>
 
-
<img style="float: left; height: 200px;" src="https://static.igem.org/mediawiki/2013/4/43/Dtu_julie.jpg"></img>
 
-
<div style="display: table; height: 300px;">
 
-
  <div style="display: table-cell; vertical-align: middle;">
 
-
</html>
 
===== [[File:Denmark_Flag.gif|30px]] Julie Rank =====
===== [[File:Denmark_Flag.gif|30px]] Julie Rank =====
 +
* Viewed early versions of our presentation and provided excellent feedback on how we could improve
 +
* Helped during the BioBrick workshop
-
<html>
 
-
  </div>
 
-
</div>
 
-
</html>
 
-
 
-
<html>
 
-
  <span class="mw-headline" id="Ali_Altıntaş "></span><br><br>
 
-
<img style="float: right;" src="https://static.igem.org/mediawiki/2013/3/30/Dtu_ali.jpeg"></img>
 
-
<div style="display: table; height: 300px;">
 
-
  <div style="display: table-cell; vertical-align: middle;">
 
-
</html>
 
===== [[File:Turkey_Flag.png|30px]] Ali Altıntaş =====
===== [[File:Turkey_Flag.png|30px]] Ali Altıntaş =====
-
 
+
* Provided assistance in the 208 lab with general lab technique
-
<html>
+
* Help with debugging gel pictures and methods
-
  </div>
+
* Kindly gave us filter sterilization units
-
</div>
+
-
</html>
+
-
 
+
-
<html>
+
-
  <span class="mw-headline" id="Sébastien_Muller"></span><br><br>
+
-
<img style="float: left;" src="https://static.igem.org/mediawiki/2013/f/ff/Dtu_sebastian.jpeg"></img>
+
-
<div style="display: table; height: 300px;">
+
-
  <div style="display: table-cell; vertical-align: middle;">
+
-
</html>
+
===== [[File:Flag_of_France.png|30px]] Sébastien Muller =====
===== [[File:Flag_of_France.png|30px]] Sébastien Muller =====
 +
* Provided assistance in the 208 lab with general lab technique
 +
* Helped debugging PCR-reactions
 +
* Kindly gave us loading dye and DNA ladder
-
<html>
+
== Special Thanks to ==
-
  </div>
+
<hr/>
-
</div>
+
Gizem Mutlu, PhD student DTU Environmental Engineering for her help with initial calibration of the N<sub>2</sub>O and NO sensors, and for preparing the NO standard solution.
-
</html>
+
-
|}
+
Tina Johansen, Laboratory Technician DTU Systems biology for her technical help with the bioreactor set up and to Jette Thykær, Associate Professor DTU Systems Biology for her assistance scheduling time on the bioreactor.
-
</div>
+
-
<div style="clear: both;"></div>
+
-
<div class="overviewBox left">
+
Natalia Skawińska, who participated in the high school outreach, and provided advice on cloning in ''E. coli''.
-
== Special Thanks to ==
+
Morten Nørholm, who developed the X7 polymerase ([http://www.biomedcentral.com/1472-6750/10/21 link])
-
<hr/>
+
[http://www.cbs.dtu.dk/ Center for Biological Sequence Analysis] for letting us use one of their offices and their coffee machine!
[http://www.cbs.dtu.dk/ Center for Biological Sequence Analysis] for letting us use one of their offices and their coffee machine!
[https://2011.igem.org/Team:DTU-Denmark/How_to_customize_an_iGEM_wiki DTU iGEM 2011 Team] for their Wiki Guide, which helped in the creation of this site.
[https://2011.igem.org/Team:DTU-Denmark/How_to_customize_an_iGEM_wiki DTU iGEM 2011 Team] for their Wiki Guide, which helped in the creation of this site.
-
 
-
[https://2011.igem.org/Team:DTU-Denmark-2 DTU iGEM 2011 Team-2] members Mathilde and Julie for lab assistance and pitch training.
 
-
 
-
[https://2010.igem.org/Team:DTU-Denmark/SPL DTU iGEM 2010 Team] members for assisting us, and introducing us to their Synthetic Promoter Libraries.
 
[https://2009.igem.org/Team:DTU_Denmark/USERprogram DTU iGEM 2009 Team] for their software, [http://www.cbs.dtu.dk/services/PHUSER/ PHUSER 2.0], that we have used and beta tested.
[https://2009.igem.org/Team:DTU_Denmark/USERprogram DTU iGEM 2009 Team] for their software, [http://www.cbs.dtu.dk/services/PHUSER/ PHUSER 2.0], that we have used and beta tested.
-
[[Team:UNIK_Copenhagen|University of Copenhagen iGEM 2013 Team]] and [[Team:SDU-Denmark|University of Southern Denmark iGEM 2013 Team]] for joining us for an introductory lab session and indian food.
+
[[Team:UNIK_Copenhagen|University of Copenhagen iGEM 2013 Team]] and [[Team:SDU-Denmark|University of Southern Denmark iGEM 2013 Team]] for joining us for the [[Team:DTU-Denmark/Biobrick_Workshop|Biobrick Workshop]] and indian food.
[[Team:SDU-Denmark|University of Southern Denmark iGEM 2013 Team]] for arranging the DK-Meet-up.
[[Team:SDU-Denmark|University of Southern Denmark iGEM 2013 Team]] for arranging the DK-Meet-up.
-
</div>
 
-
<div style="clear: both;"></div>
 
-
 
-
<div class="overviewBox left">
 
-
 
==Graphics==
==Graphics==
<hr/>
<hr/>
-
Top banner is made from a [http://commons.wikimedia.org/wiki/File:Discharge_pipe.jpg public domain] photo from [http://www.usda.gov US Department of Agriculture].
 
National flags, are obtained from Wikipedia.
National flags, are obtained from Wikipedia.
Other graphics are made by our team.
Other graphics are made by our team.
-
</div>
 
-
<div style="clear: both;"></div>
 
-
 
-
<div class="overviewBox left">
 
== Sponsors ==
== Sponsors ==
<hr/>
<hr/>
-
{|border="0" cellspacing="30"
+
{|border="0"  
-
|[[File:DTU otto.jpg|450px|left|link=http://www.ottomoensted.dk/]] ||
+
|[[File:DTU otto.jpg|250px|left|link=http://www.ottomoensted.dk/]] ||
Otto Mønsted Fonden
Otto Mønsted Fonden
|-
|-
Line 211: Line 163:
|-
|-
|}
|}
-
</div>
 
-
<div style="clear: both;"></div>
 
-
 
-
<div class="overviewBox left">
 
-
</div>
 
-
<div style="clear: both;"></div>
 
-
</div>
 
{{:Team:DTU-Denmark/Templates/EndPage}}
{{:Team:DTU-Denmark/Templates/EndPage}}
<!-- {{:Team:DTU-Denmark/Templates/Footer1}} -->
<!-- {{:Team:DTU-Denmark/Templates/Footer1}} -->

Latest revision as of 22:35, 4 October 2013

Attributions

Contents

Work done by the team

30px Katarzyna Chyzynska
Canada Flag.jpg Helen Cook
  • Performed and analyzed data from the characterization and verification experiments
  • Created the diagrams describing our project
  • Participated in high school outreach, Biobrick workshop and the discussion on IP and synthetic biology.
30px Kristian Davidsen
Greece Flag.jpg Ariadni Droumpali
30px Piotr Dworzynski
30px Malgorzata Futyma
  • USER cloning and other work in 208 lab
  • Drew pictures for our banner and the slideshow in the front page
  • Participated in high school outreach and the Biobrick workshop
30px Jakob Berg Jespersen
  • Constructed protein models
  • Designed our t-shirts and business cards
  • Found sponsors and funding
  • Participated in high school outreach and the Biobrick workshop
30px Vanessa Jurtz
Greece Flag.jpg Anastasia Mourka
  • Wiki design and implementation
  • Participated in the discussion on IP and synthetic biology.
Greece Flag.jpg Natalia Papargyri
  • Responsible for our safety form and section
  • Participated in high school outreach and the Biobrick workshop
Italy Flag.png Julia Villarroel
  • USER cloning in 208 lab
  • Participated in high school outreach and the Biobrick workshop
30px Henrike Zschach
  • USER cloning in the 208 lab
  • Participated in high school outreach, Biobrick workshop and the discussion on IP and synthetic biology.

Assistance provided by our supervisors

USA Flag.png Chris Workman (PI)
  • Provided perl and R scripts to analyze raw biolector data
  • Provided lab space for us to work in (building 208)
Flag of Belgium.svg.png Barth Smets
  • Provided the idea for our project
  • Provided lab space for us to work in (building 115)

Assistance provided by our advisors

30px Thomas Trolle
  • Provided early advice on the design of the pBAD SPL
  • Helped during the BioBrick workshop
30px Anne Mathilde Lund
  • Generously provided us with X7 polymerase and assistance with debugging PCR reactions
  • Arranged all experiments under the BioBrick workshop
  • Great help with primer design for USER cloning as with introduction on how to use the gradient PCR-machine (link to notebook)
  • Helped in "hard to amplify" PCR situations
30px Andreas Porse
  • Reviewed our initial plan and provided insight into E. coli specific signal peptides
  • Assisted in primer design for USER cloning i the "Hello World project"
  • General questions about sequencing, PCR, lab techniques etc.
30px Julie Rank
  • Viewed early versions of our presentation and provided excellent feedback on how we could improve
  • Helped during the BioBrick workshop
Turkey Flag.png Ali Altıntaş
  • Provided assistance in the 208 lab with general lab technique
  • Help with debugging gel pictures and methods
  • Kindly gave us filter sterilization units
Flag of France.png Sébastien Muller
  • Provided assistance in the 208 lab with general lab technique
  • Helped debugging PCR-reactions
  • Kindly gave us loading dye and DNA ladder

Special Thanks to

Gizem Mutlu, PhD student DTU Environmental Engineering for her help with initial calibration of the N2O and NO sensors, and for preparing the NO standard solution.

Tina Johansen, Laboratory Technician DTU Systems biology for her technical help with the bioreactor set up and to Jette Thykær, Associate Professor DTU Systems Biology for her assistance scheduling time on the bioreactor.

Natalia Skawińska, who participated in the high school outreach, and provided advice on cloning in E. coli.

Morten Nørholm, who developed the X7 polymerase ([http://www.biomedcentral.com/1472-6750/10/21 link])

[http://www.cbs.dtu.dk/ Center for Biological Sequence Analysis] for letting us use one of their offices and their coffee machine!

DTU iGEM 2011 Team for their Wiki Guide, which helped in the creation of this site.

DTU iGEM 2009 Team for their software, [http://www.cbs.dtu.dk/services/PHUSER/ PHUSER 2.0], that we have used and beta tested.

University of Copenhagen iGEM 2013 Team and University of Southern Denmark iGEM 2013 Team for joining us for the Biobrick Workshop and indian food.

University of Southern Denmark iGEM 2013 Team for arranging the DK-Meet-up.

Graphics

National flags, are obtained from Wikipedia.

Other graphics are made by our team.

Sponsors

DTU otto.jpg

Otto Mønsted Fonden

DTU Bruun.png

Otto Bruuns Fond

DTU VFL DK Logo singleline RGB.png

Videncenteret for Landbrug

DTU Brenntag.jpg

Brenntag

DTU kruger.png

Krüger

DTU Systembiologi.jpg

DTU Systems Biology

DTU Environment.jpg

DTU Environment

DTU logo2.jpg

Technical University of Denmark

DTU clcbio.jpg

CLC Bio

NEB Header iGem.jpg

New England Biolabs GmbH

DTU KAILOW UK.png

Kailow


Retrieved from "http://2013.igem.org/Team:DTU-Denmark/Attributions"