|
|
(12 intermediate revisions not shown) |
Line 151: |
Line 151: |
| <div class="maincontent" style="width: 720px; margin: 25px 0 25px 0; float: right;"> | | <div class="maincontent" style="width: 720px; margin: 25px 0 25px 0; float: right;"> |
| | | |
- | <h1 class="title1">Results</h1> | + | <h1 class="title1">Results - T7 Polymerase characterization</h1> |
| | | |
- | <h2 class="title2">T7 Polymerase Characterization</h2> | + | <h2 class="title2">Objective</h2> |
- | | + | <p class="texte">Characterize the activity of T7 polymerase with an RFP reporter under a T7 promoter. Reminder: T7 polymerase is necessary in our system to activate the two T7 promoters in the AND1 and AND2 gate.</p> |
- | | + | |
- | | + | |
- | | + | |
- | | + | |
- | <h3 class="title3">XOR1</h3>
| + | |
- | | + | |
- | | + | |
- | <div class="accordeon">
| + | |
- | | + | |
- | <h2 class="faq" title="Click to open the FAQ"> In vitro</h2>
| + | |
- | <div class="infos">
| + | |
- | <img style="width:340px;" src="https://static.igem.org/mediawiki/2013/2/20/XOR1_petit.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/6/6b/XOR1_bio_80.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/7/72/Test_carac.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/7/78/Graph.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <p class="texte"><i>Description des conditions d'expérimentation</i></p>
| + | |
- | | + | |
- | <br>
| + | |
- | <br>
| + | |
- | <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
| + | |
- | <br>
| + | |
- | <img style="width:20px" src="https://static.igem.org/mediawiki/2013/2/23/Top_arrow.png"class="imgcontent2" /><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/results">Back to the top</a></p>
| + | |
- | <br>
| + | |
- | <br>
| + | |
- | </div>
| + | |
- | </div>
| + | |
- | | + | |
- | <div class="accordeon">
| + | |
- |
| + | |
- | <h2 class="faq" title="Click to open the FAQ"> In vivo</h2>
| + | |
- | <div class="infos">
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/2/20/XOR1_petit.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/6/6b/XOR1_bio_80.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/7/72/Test_carac.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/7/78/Graph.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <p class="texte"><i>Description des conditions d'expérimentation</i></p>
| + | |
- | | + | |
- | <br>
| + | |
- | <br>
| + | |
- | <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
| + | |
- | <br>
| + | |
- | <img style="width:20px" src="https://static.igem.org/mediawiki/2013/2/23/Top_arrow.png"class="imgcontent2" /><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/results">Back to the top</a></p>
| + | |
- | <br>
| + | |
- | <br>
| + | |
- | </div>
| + | |
- | </div>
| + | |
- | | + | |
- | | + | |
- | <div class="clear"></div>
| + | |
- | | + | |
- | <h3 class="title3">AND1</h3>
| + | |
- | | + | |
- | <div class="accordeon">
| + | |
- | | + | |
- | <h2 class="faq" title="Click to open the FAQ"> In vitro</h2>
| + | |
- | <div class="infos">
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/2/20/XOR1_petit.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/6/6b/XOR1_bio_80.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/7/72/Test_carac.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/7/78/Graph.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <p class="texte"><i>Description des conditions d'expérimentation</i></p>
| + | |
- | | + | |
- | <br>
| + | |
- | <br>
| + | |
- | <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
| + | |
- | <br>
| + | |
- | <img style="width:20px" src="https://static.igem.org/mediawiki/2013/2/23/Top_arrow.png"class="imgcontent2" /><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/results">Back to the top</a></p>
| + | |
- | <br>
| + | |
- | <br>
| + | |
- | </div>
| + | |
- | </div>
| + | |
- | | + | |
- | <div class="accordeon">
| + | |
- | | + | |
- | <h2 class="faq" title="Click to open the FAQ"> In vivo</h2>
| + | |
- | <div class="infos">
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/2/20/XOR1_petit.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/6/6b/XOR1_bio_80.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/7/72/Test_carac.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/7/78/Graph.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <p class="texte"><i>Description des conditions d'expérimentation</i></p>
| + | |
- | | + | |
- | <br>
| + | |
- | <br>
| + | |
- | <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
| + | |
- | <br>
| + | |
- | <img style="width:20px" src="https://static.igem.org/mediawiki/2013/2/23/Top_arrow.png"class="imgcontent2" /><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/results">Back to the top</a></p>
| + | |
- | <br>
| + | |
- | <br>
| + | |
- | </div>
| + | |
- | </div>
| + | |
- | | + | |
- | | + | |
- | <div class="clear"></div>
| + | |
- | | + | |
- | | + | |
- | | + | |
- | <h3 class="title3">Red Light Sensor</h3>
| + | |
- | | + | |
- | | + | |
- | <div class="accordeon">
| + | |
- | | + | |
- | <h2 class="faq" title="Click to open the FAQ"> In vitro</h2>
| + | |
- | <div class="infos">
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/2/20/XOR1_petit.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/6/6b/XOR1_bio_80.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/7/72/Test_carac.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/7/78/Graph.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <p class="texte"><i>Description des conditions d'expérimentation</i></p>
| + | |
- | | + | |
- | <br>
| + | |
- | <br>
| + | |
- | <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
| + | |
- | <br>
| + | |
- | <img style="width:20px" src="https://static.igem.org/mediawiki/2013/2/23/Top_arrow.png"class="imgcontent2" /><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/results">Back to the top</a></p>
| + | |
- | <br>
| + | |
- | <br>
| + | |
- | </div>
| + | |
- | </div>
| + | |
- | | + | |
- | <div class="accordeon">
| + | |
- |
| + | |
- | <h2 class="faq" title="Click to open the FAQ"> In vivo</h2>
| + | |
- | <div class="infos">
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/2/20/XOR1_petit.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/6/6b/XOR1_bio_80.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/7/72/Test_carac.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/7/78/Graph.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <p class="texte"><i>Description des conditions d'expérimentation</i></p>
| + | |
- | | + | |
- | <br>
| + | |
- | <br>
| + | |
- | <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
| + | |
- | <br>
| + | |
- | <img style="width:20px" src="https://static.igem.org/mediawiki/2013/2/23/Top_arrow.png"class="imgcontent2" /><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/results">Back to the top</a></p>
| + | |
- | <br>
| + | |
- | <br>
| + | |
- | </div>
| + | |
- | </div>
| + | |
- | | + | |
- | | + | |
- | | + | |
- | <h3 class="title3">Blue Light Sensor</h3>
| + | |
- | | + | |
- | | + | |
- | <div class="accordeon">
| + | |
- | | + | |
- | <h2 class="faq" title="Click to open the FAQ"> In vitro</h2>
| + | |
- | <div class="infos">
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/2/20/XOR1_petit.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/6/6b/XOR1_bio_80.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/7/72/Test_carac.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/7/78/Graph.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <p class="texte"><i>Description des conditions d'expérimentation</i></p>
| + | |
- | | + | |
- | <br>
| + | |
- | <br>
| + | |
- | <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
| + | |
- | <br>
| + | |
- | <img style="width:20px" src="https://static.igem.org/mediawiki/2013/2/23/Top_arrow.png"class="imgcontent2" /><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/results">Back to the top</a></p>
| + | |
- | <br>
| + | |
- | <br>
| + | |
- | </div>
| + | |
- | </div>
| + | |
- | | + | |
- | <div class="accordeon">
| + | |
- |
| + | |
- | <h2 class="faq" title="Click to open the FAQ"> In vivo</h2>
| + | |
- | <div class="infos">
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/2/20/XOR1_petit.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/6/6b/XOR1_bio_80.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/7/72/Test_carac.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/7/78/Graph.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <p class="texte"><i>Description des conditions d'expérimentation</i></p>
| + | |
- | | + | |
- | <br>
| + | |
- | <br>
| + | |
- | <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
| + | |
- | <br>
| + | |
- | <img style="width:20px" src="https://static.igem.org/mediawiki/2013/2/23/Top_arrow.png"class="imgcontent2" /><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/results">Back to the top</a></p>
| + | |
- | <br>
| + | |
- | <br>
| + | |
- | </div>
| + | |
- | </div>
| + | |
- | | + | |
- | | + | |
- | | + | |
- | <h3 class="title3">Pol T7</h3>
| + | |
- | | + | |
- | | + | |
- | <div class="accordeon">
| + | |
- | | + | |
- | <h2 class="faq" title="Click to open the FAQ"> In vitro</h2>
| + | |
- | <div class="infos">
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/2/20/XOR1_petit.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/6/6b/XOR1_bio_80.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/7/72/Test_carac.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/7/78/Graph.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <p class="texte"><i>Description des conditions d'expérimentation</i></p>
| + | |
- | | + | |
- | <br>
| + | |
- | <br>
| + | |
- | <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
| + | |
- | <br>
| + | |
- | <img style="width:20px" src="https://static.igem.org/mediawiki/2013/2/23/Top_arrow.png"class="imgcontent2" /><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/results">Back to the top</a></p>
| + | |
- | <br>
| + | |
- | <br>
| + | |
- | </div>
| + | |
- | </div>
| + | |
- | | + | |
- | <div class="accordeon">
| + | |
- |
| + | |
- | <h2 class="faq" title="Click to open the FAQ"> In vivo</h2>
| + | |
- | <div class="infos">
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/2/20/XOR1_petit.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/6/6b/XOR1_bio_80.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <img style="width:340px; float:left;" src="https://static.igem.org/mediawiki/2013/7/72/Test_carac.jpg" class="imgcontent" />
| + | |
- | <img style="width:340px; float:right;" src="https://static.igem.org/mediawiki/2013/7/78/Graph.jpg" class="imgcontent" />
| + | |
- | <div class="clear"></div>
| + | |
- | <p class="texte"><i>Description des conditions d'expérimentation</i></p>
| + | |
- | | + | |
- | <br>
| + | |
- | <br>
| + | |
- | <p class="texteprotocol"><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/notebook/protocols/charac_recomb">In vitro recombinase characterization protocol</a></p>
| + | |
- | <br>
| + | |
- | <img style="width:20px" src="https://static.igem.org/mediawiki/2013/2/23/Top_arrow.png"class="imgcontent2" /><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/results">Back to the top</a></p>
| + | |
- | <br>
| + | |
- | <br>
| + | |
- | </div>
| + | |
- | </div>
| + | |
- | | + | |
- | | + | |
- | | + | |
- | <h3 class="title3">General inductor</h3>
| + | |
- | | + | |
- | <div class="accordeon">
| + | |
- |
| + | |
- | <h2 class="faq" title="Click to open the FAQ"> In vivo</h2>
| + | |
- | <div class="infos">
| + | |
- | | + | |
- | <img src="https://static.igem.org/mediawiki/2013/d/d4/General_inducer_notebook_-_680px.png" class="imgcontent" />
| + | |
- | | + | |
- | <p class="texte">The couple TetR-pTet system construction is a first step to characterize the entire system. A constitutive promoter (BBa_J23116) was assemble to tetR and then assemble to pTet-rbs-RFP-term (Bba_I13521). pTet is a regulator constitutively ON that expresses the mRFP1 protein. TetR is an inducer that binds to pTet promoter and thus, represses expression the downstream system. Supply of tetracycline or its analog aTc (anhydrotetracycline) is known to bind to tetR and invert the operation (inhibits expression of mRFP in this case).<br>
| + | |
- | <br>
| + | |
- | After 18 hours, clones containing this assembly (BBa_J23116-TetR-pTet-RFP) show a leaky basal expression of mRFP. We suppose that the promoter was too weak to express TetR in large quantity. Assembly of a stronger promoter could improve the system and lock the response to an ON/OFF response. <br>
| + | |
- | <br>
| + | |
- | Besides, an experience was done to analyze the effect of the aTc inducer. Result show a visible induction of the red fluorescent protein expression by addition of aTC (60 ng/mL).</p>
| + | |
- | | + | |
- | <img src="https://static.igem.org/mediawiki/2013/e/e1/Induct_gen_pfaible.png" class="imgcontent" />
| + | |
- | | + | |
- | <br>
| + | |
- | <br>
| + | |
- | <img style="width:20px" src="https://static.igem.org/mediawiki/2013/2/23/Top_arrow.png"class="imgcontent2" /><a href="https://2013.igem.org/Team:INSA_Toulouse/contenu/lab_practice/results">Back to the top</a></p>
| + | |
- | <br>
| + | |
- | <br>
| + | |
- | </div>
| + | |
- | </div>
| + | |
- | | + | |
| | | |
| + | <h2 class="title2">Conception</h2> |
| + | <p class="texte">The following constructions were designed:<br><br> |
| + | <img src="https://static.igem.org/mediawiki/2013/0/07/Result_polT7_1.jpg" class="imgcenter" /><br><br> |
| + | The coding sequence of T7 polymerase was extracted from the genome of <i>E. coli</i> BL21-DE3. Further cloning steps were necessary to add a promoter, a rbs and a terminator. The expected functioning is: |
| + | - Production of RFP if T7 polymerase is present (red colonies) |
| + | - Absence of RFP if T7 polymerase is absent (white colonies)</p> |
| | | |
| + | <h2 class="title2">Result</h2> |
| + | <p class="texte">The addition of a promoter and a rbs to the T7 polymerase gene was successful. However, we did not have time to go further and add the terminator to the construct.<br> Nevertheless, a new biobrick pT7-RFP was created!<br> |
| | | |
| + | Following is the electrophoresis gel showing that we obtained a fragment of expected length (829 bp) by restriction with EcoRI/PstI:<br><br> |
| + | <img src="https://static.igem.org/mediawiki/2013/f/f9/Result_polT7_2.jpg" class="imgcenter" /><br><br> |
| | | |
| + | Verifications of the validity of the constructions were performed with visual inspection of the colours of the colonies. The pT7-RFP plasmid was transformed into competent BL21-DE3. Plates were supplemented or not with IPTG. White colonies were obtained on the Petri dishes with no IPTG and red colonies on the Petri dishes containing IPTG. </p> |
| | | |
| + | <img style="width:340px" src="https://static.igem.org/mediawiki/2013/9/94/Boite_rouge.jpg" class="imgcontentleft" /><br> |
| + | <img style="width:340px" src="https://static.igem.org/mediawiki/2013/7/78/Boite_blanche.jpg" class="imgcontentright" /><div class="clear"></div> |
| | | |
| + | <h2 class="title2">Discussion</h2> |
| + | <p class="texte">The biobrick behave as expected. It was submitted to the registry as <a href=" http://parts.igem.org/Part:BBa_K1132045" target="_blank"> BBa_K1132045</a>.</p> |
| | | |
| | | |