Team:Heidelberg/Delftibactin/Delftibactin
From 2013.igem.org
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<h1><span style="font-size:180%;color:#FFCC00;">Delftibactin.</span><span class="text-muted" style="font-size:120%"> Bringing it all together.</span></h1> | <h1><span style="font-size:180%;color:#FFCC00;">Delftibactin.</span><span class="text-muted" style="font-size:120%"> Bringing it all together.</span></h1> | ||
- | <p style="font-size:14px"> | + | <p style="font-size:14px">Let's explore the vision to recycle gold from electronic waste using recombinantly expressed delftibactin.</p> |
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<li class="active month_tab" id="may"><a href="#" style="width:100px; text-align:center">May</a></li> | <li class="active month_tab" id="may"><a href="#" style="width:100px; text-align:center">May</a></li> | ||
- | <li class="month_tab" id="june"><a href="#" style="width:100px; text-align:center">June</a></li> | + | <!--<li class="month_tab" id="june"><a href="#" style="width:100px; text-align:center">June</a></li> |
- | <li class="month_tab" id="july"><a href="#" style="width:100px; text-align:center" >July</a></li> | + | <li class="month_tab" id="july"><a href="#" style="width:100px; text-align:center" >July</a></li>--> |
<li class="month_tab" id="august"><a href="#" style="width:100px; text-align:center">August</a></li> | <li class="month_tab" id="august"><a href="#" style="width:100px; text-align:center">August</a></li> | ||
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<p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;"> | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;"> | ||
- | + | We obtained <i>D. acidovorans</i> DSM-39 from the DSMZ and successfully reproduced the paper of Johnsson <i>et al. D. acidovorans</i> is capable to precipitate solid gold from gold chloride solution as purple-black nanoparticles. Already at low concentrations of gold chloride, gold nonaparticles are precipitated increasing with concentration of gold chloride in solution. In our experiments, precipitation on agar plates worked even better than described in the paper. | |
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<div class="container"> | <div class="container"> | ||
<div class="carousel-caption scrollContent2" data-spy="scroll" data-target="#navbarExample" data-offset="0"> | <div class="carousel-caption scrollContent2" data-spy="scroll" data-target="#navbarExample" data-offset="0"> | ||
<h1>Week 3</h1> | <h1>Week 3</h1> | ||
- | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;"> | + | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;">We were able to dissolve gold-containing parts of an old CPU and established a protocol for recovery of gold as soluble gold salts from electronic waste. Moreover, we were able to show specific precipitation of solid gold by <i>D. acidovorans</i> from this "dissolved electronic waste". |
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<div class="item august first"> | <div class="item august first"> | ||
<div class="container"> | <div class="container"> | ||
<div class="carousel-caption scrollContent2" data-spy="scroll" data-target="#navbarExample" data-offset="0"> | <div class="carousel-caption scrollContent2" data-spy="scroll" data-target="#navbarExample" data-offset="0"> | ||
<h1>Week 15</h1> | <h1>Week 15</h1> | ||
- | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;"> | + | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;">Using supernatants from the new <i>Delftia acidovorans</i> strain SPH-1, we showed precipitation of gold chloride solution to gold nanoparticles. Furthermore, we melted the purple-black nanoparticles to shiny solid gold. </p> |
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<div class="carousel-caption scrollContent2" data-spy="scroll" data-target="#navbarExample" data-offset="0"> | <div class="carousel-caption scrollContent2" data-spy="scroll" data-target="#navbarExample" data-offset="0"> | ||
<h1>Week 19</h1> | <h1>Week 19</h1> | ||
- | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;"> | + | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;">We optimized growth conditions of D. acidovorans and evaluated endogenous background precipitation of metall ions in the possible target E. coli strains E. coli DH10ß and BL21 DE3 following incubation over night on LB and ACM plates. <i>Delftia acidovorans</i> did not exceed <i>E. coli</i>, most probably due to insufficient cultivation time. When grown on LB plates, neither <i>D. acidovorans</i> nor <i>E. coli</i> showed any reactivity. </p> |
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<div class="carousel-caption scrollContent2" data-spy="scroll" data-target="#navbarExample" data-offset="0"> | <div class="carousel-caption scrollContent2" data-spy="scroll" data-target="#navbarExample" data-offset="0"> | ||
<h1>Week 20</h1> | <h1>Week 20</h1> | ||
- | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;"> | + | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;">We continued optimized growth conditions of <i>D. acidovorans</i> and testing various <i>E. coli</i> strains for their endogenous capability to precipitate gold in order to identify the strain with the least background to be used as target strain after 2 and 3 days as well as grown at 30°C and room temperature. A cultivation at 30°C for 3 days was identified as optimal. We also started to establish purification of Delftibactin using HP20 resins and successfully verified presence of Delftibactin in the supernatant of <i>D. acidovorans</i> SHP-1. Additionally, we proved precipitation of gold by the purified Delftibactin and detected it by Micro-TOF File:20130911Malditof.pdf. Moreover, we triple-electroporated the final DelRest construct, the final MMCoA plasmid and the first promissing DelH clone into <i>E. coli</i> DH10ß. The Micro-TOF has to be repeated again next week. </p> |
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<div class="carousel-caption scrollContent2" data-spy="scroll" data-target="#navbarExample" data-offset="0"> | <div class="carousel-caption scrollContent2" data-spy="scroll" data-target="#navbarExample" data-offset="0"> | ||
<h1>Week 21</h1> | <h1>Week 21</h1> | ||
- | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;"> | + | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;">We repeated last week's Micro-TOF of the first promossing triple-clone, which did not show detectable expression of Delftibactin. </p> |
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<div class="carousel-caption scrollContent2" data-spy="scroll" data-target="#navbarExample" data-offset="0"> | <div class="carousel-caption scrollContent2" data-spy="scroll" data-target="#navbarExample" data-offset="0"> | ||
<h1>Week 22</h1> | <h1>Week 22</h1> | ||
- | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;"> | + | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;">Possible E. coli target strains BL21 DE, DH10ß and NEB Turbo were analyzed for their background expression and indcibility. E. coli BL21 DE was identified as best of these three. It was electroporated with DelRest and pIK8.6 and of these, electrocompetent cells were prepared. </p> |
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<div class="carousel-caption scrollContent2" data-spy="scroll" data-target="#navbarExample" data-offset="0"> | <div class="carousel-caption scrollContent2" data-spy="scroll" data-target="#navbarExample" data-offset="0"> | ||
<h1>Week 23</h1> | <h1>Week 23</h1> | ||
- | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;"> | + | <p style="font-size:10pt; text-align:justify; position:relative; margin-left:6%;">E. coli BL21 DE + DelRest + pIK8.6 were elctroporated with the DelH clone C5, which harbors a amino acid substitution at the beginning of DelH. Its capability to precipitate gold from solution was analyzed on ACM plates following induction by IPTG. Due to a contamination, the results were inconclusive. The production of Delftibactin was accessed by Micro-TOF. The results were inconclusive, since the ''D. acidovorans'' positive control was negative, the experiment has to be repeated. </p> |
<p><a class="btn btn-large btn-primary" href="#">Browse gallery</a></p> | <p><a class="btn btn-large btn-primary" href="#">Browse gallery</a></p> | ||
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- | < | + | <h3>Graphical Abstract</h3> |
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Latest revision as of 02:19, 5 October 2013