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Team:Paris Saclay/Notebook/August/30
From 2013.igem.org
(→8 - Result of the purification colony of MG1655Z1 Δfnr) |
(→1 - Electrophoresis of PCR Colony of FNR, RBS-FNR and RBS-BphR2) |
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In aerobic condition, FNR protein is inactive and can not bind to constitutive promoter Pndh*, ''amilCP'' is expressed and we can see the bacteria have violet colour. | In aerobic condition, FNR protein is inactive and can not bind to constitutive promoter Pndh*, ''amilCP'' is expressed and we can see the bacteria have violet colour. | ||
| - | ===='''2 - Results of culture of | + | ===='''2 - Results of culture of Pndh* with RBS-AmilCP-Term in pSB1C3, PnirB with RBS-LacZ-Term in pSB1C3 in aerobic and anaerobic conditions'''==== |
XiaoJing | XiaoJing | ||
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| - | | style="width:350px;border:1px solid black;" | [[]] | + | | style="width:350px;border:1px solid black;" | [[File:Psgel13008.jpg]] |
| style="width:350px;border:1px solid black;vertical-align:top;" | | | style="width:350px;border:1px solid black;vertical-align:top;" | | ||
* Well 1 : 6µL DNA Ladder | * Well 1 : 6µL DNA Ladder | ||
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| style="border:1px solid black;padding:5px;background-color:#DEDEDE;" | | | style="border:1px solid black;padding:5px;background-color:#DEDEDE;" | | ||
| - | We | + | We obtained fragments at the right size. |
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| - | [[File:PsLB3008.jpg| | + | [[File:PsLB3008.jpg|311px]][[File:PsKm3008.jpg|300px]] |
| - | [[File:PsCm3008.jpg| | + | [[File:PsCm3008.jpg|311px]][[File:PsAm3008.jpg|311px]] |
==='''A - Aerobic/Anaerobic regulation system / B - PCB sensor system'''=== | ==='''A - Aerobic/Anaerobic regulation system / B - PCB sensor system'''=== | ||
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| - | | style="width:350px;border:1px solid black;" |]] | + | | style="width:350px;border:1px solid black;" |[[File:Psgel23008.jpg]] |
| style="width:350px;border:1px solid black;vertical-align:top;" | | | style="width:350px;border:1px solid black;vertical-align:top;" | | ||
* Well 1 : 6µL DNA Ladder | * Well 1 : 6µL DNA Ladder | ||
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* Well 28 to 41 : 5µL of RBS-FNR + 1µl of 6X loading dye | * Well 28 to 41 : 5µL of RBS-FNR + 1µl of 6X loading dye | ||
* Well 42 to 49 : 5µL of RBS-BphR2 + 1µl of 6X loading dye | * Well 42 to 49 : 5µL of RBS-BphR2 + 1µl of 6X loading dye | ||
| - | * | + | * Well 50 : 6µL DNA Ladder |
* Gel : 1% | * Gel : 1% | ||
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| style="border:1px solid black;padding:5px;background-color:#DEDEDE;" | | | style="border:1px solid black;padding:5px;background-color:#DEDEDE;" | | ||
| - | We | + | We obtained fragments at the right size for FNR and RBS-FNR. The Gisbon assembly of 08/26/13 was good. |
|} | |} | ||
Latest revision as of 01:23, 5 October 2013
Notebook : August 30
Lab work
A - Aerobic/Anaerobic regulation system
Objective : characterize BBa_K1155000, BBa_K1155004, BBa_K1155005, BBa_K1155006
1 - Results of liquid culture of Pndh*-RBS-Amil CP-Term in pSB1C3 in aerobic and anaerobic conditions
XiaoJing
|
IT WORKS !!! |
In anaerobic condition, FNR protein (active form) binds to the constitutive promoter Pndh* and repressed amilCP expression. Therefore, the bacteria have no colour.
In aerobic condition, FNR protein is inactive and can not bind to constitutive promoter Pndh*, amilCP is expressed and we can see the bacteria have violet colour.
2 - Results of culture of Pndh* with RBS-AmilCP-Term in pSB1C3, PnirB with RBS-LacZ-Term in pSB1C3 in aerobic and anaerobic conditions
XiaoJing
|
Purification of 08/29/13 didn't work. We have blue colonies for Pndh* with RBS-AmilCP-Term in pSB1C3 in aerobic and anaerobic conditions. We also have blue colonies for PnirB with RBS-LacZ-Term in pSB1C3 in anaerobic conditions. |
3 - Ligation of Pndh* with RBS-LacZ-Term in pSB1C3
XiaoJing
Used quantities :
- Pndh* : 8µL
- RBS-LacZ-Term in pSB1C3 : 3µL
- Buffer ligation : 2µL
- Ligase : 1µL
- H2O : 6µL
4 - Transformation of ligation of Pndh* with RBS-LacZ-Term in pSB1C3 in DH5α strain
XiaoJing
Protocol : Bacterial transformation
We incubate the bacteria in LB-chloramphenicol-Xgal plate at 37°C in aerobic conditions.
5 - Ligation of Pfnr with RBS-LacZ-Term in pSB3K3 and PnarK with RBS-LacZ-Term in pSB3K3
XiaoJing
Used quantities :
- Pndh*, PnarK : 3µL
- RBS-LacZ-Term : 3µL
- pSB3K3 : 5µL
- Buffer ligase : 2µL
- Ligase : 1µL
- H2O : 6µL
6 - Transformation of ligation of Pndh* with RBS-LacZ-Term in pSB3K3 and PnarK with RBS-LacZ-Term in pSB3K3 in DH5α strain
XiaoJing
Protocol : Bacterial transformation
We incubate the bacteria at 37°C with LB-Kanamycine-Xgal in anaerobic conditions for PnarK with RBS-LacZ-Term in pSB3K3.
We incubate the bacteria at 37°C with LB-Kanamycine-Xgal in aerobic conditions for Pndh* with RBS-LacZ-Term in pSB3K3.
7 - Electrophoresis of PCR Colony of Pndh* with RBS_AmilCP-Term in DH5α strain
XiaoJing
|
|
Expected sizes :
- Pndh* with RBS_AmilCP-Term : 1000bp
|
We obtained fragments at the right size. |
8 - Result of the purification colony of MG1655Z1 Δfnr
XiaoJing
|
It works. Our plasmid didn't contain any antibiotic resistance gene. Colonies grew in LB medium and didn't grow on kanamycin, ampicilin, chloramphenicol medium. We obtain strain MG1655Z1 Δfnr. |
A - Aerobic/Anaerobic regulation system / B - PCB sensor system
Objective : obtaining FNR and BphR2 proteins
1 - Electrophoresis of PCR Colony of FNR, RBS-FNR and RBS-BphR2
|
|
Expect sizes :
- FNR : 1096 bp
- RBS-FNR : 1014 bp
- RBS-BphR2 : 1469 bp
|
We obtained fragments at the right size for FNR and RBS-FNR. The Gisbon assembly of 08/26/13 was good. |
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