Team:XMU Software/Project protein/Example of optimization
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<div id="xmu_software_Example_of_optimization"> | <div id="xmu_software_Example_of_optimization"> | ||
<div id="xmu_software_right_matrix"></div> | <div id="xmu_software_right_matrix"></div> | ||
- | <p>Example of optimization</p> | + | </br><p>Example of optimization</p> |
<table cellspacing="0" width="800" border="1" class="protein_table2"> | <table cellspacing="0" width="800" border="1" class="protein_table2"> | ||
<tr> | <tr> | ||
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<tr> | <tr> | ||
<td>sequence input</td> | <td>sequence input</td> | ||
- | <td colspan="3">atggcttcctccgaagacgttatcaaagagttcatgcgtttcaaag | + | <td colspan="3"> |
+ | atggcttcctccgaagacgttatcaaagagttcatgcgtttcaaag | ||
ttcgtatggaaggttccgttaacggtcacgagttcgaaatcgaagg | ttcgtatggaaggttccgttaacggtcacgagttcgaaatcgaagg | ||
tgaaggtgaaggtcgtccgtacgaaggtacccagaccgctaaactg | tgaaggtgaaggtcgtccgtacgaaggtacccagaccgctaaactg | ||
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acatcacctcccacaacgaagactacaccatcgttgaacagtacga | acatcacctcccacaacgaagactacaccatcgttgaacagtacga | ||
acgtgctgaaggtcgtcactccaccggtgcttaataacgctgatag | acgtgctgaaggtcgtcactccaccggtgcttaataacgctgatag | ||
- | + | tgctagtgtagatcgc</td> | |
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td width="118 | + | <td width="118">sequence output</td> |
- | <td colspan="3">ATGGCCAGCAGCGAGGACGTCATCAAGGAGTTCATGAGGTTTAAGG | + | <td colspan="3"> |
+ | ATGGCCAGCAGCGAGGACGTCATCAAGGAGTTCATGAGGTTTAAGG | ||
TCCGCATGGAGGGTTCGGTCAACGGTCATGAATTCGAGATCGAGGG | TCCGCATGGAGGGTTCGGTCAACGGTCATGAATTCGAGATCGAGGG | ||
TGAAGGCGAGGGCCGCCCGTACGAAGGTACCCAGACCGCTAAGCTC | TGAAGGCGAGGGCCGCCCGTACGAAGGTACCCAGACCGCTAAGCTC | ||
Line 53: | Line 55: | ||
AAGCCTGTGCAACTACCCGGTGCTTATAAGACGGACATCAAGCTTG | AAGCCTGTGCAACTACCCGGTGCTTATAAGACGGACATCAAGCTTG | ||
ACATTACCTCCCACAATGAAGACTACACTATCGTCGAACAATATGA | ACATTACCTCCCACAATGAAGACTACACTATCGTCGAACAATATGA | ||
- | + | GCGTGCTGAGGGCAGGCACTCTACCGGTGCTTAGTAGCGGTAATGA | |
+ | <br />TGCTAGTGCAGGTCT</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
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<td align="center">0.01 </td> | <td align="center">0.01 </td> | ||
</tr> | </tr> | ||
- | </table> | + | </table></br></br></br> </br></br></br></br></br></br> |
</div> | </div> | ||
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<style> | <style> | ||
.protein_table2{ | .protein_table2{ | ||
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margin-left:10px; | margin-left:10px; | ||
font-family:Arial; | font-family:Arial; | ||
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position:absolute; | position:absolute; | ||
top:0px; | top:0px; | ||
+ | left:260px; | ||
width:1000px; | width:1000px; | ||
padding:0px; | padding:0px; | ||
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} | } | ||
#xmu_body_Example_of_optimization{ | #xmu_body_Example_of_optimization{ | ||
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p{ | p{ | ||
font-family:Arial ; | font-family:Arial ; | ||
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color:#434343; | color:#434343; | ||
- | + | margin-left:300px; | |
line-height:19px; | line-height:19px; | ||
margin-top:10px; | margin-top:10px; |
Latest revision as of 02:12, 29 October 2013
<!DOCTYPE HTML>
Example of optimization
RFP sequence | |||
biobrick number | E1010 | ||
sequence input | atggcttcctccgaagacgttatcaaagagttcatgcgtttcaaag ttcgtatggaaggttccgttaacggtcacgagttcgaaatcgaagg tgaaggtgaaggtcgtccgtacgaaggtacccagaccgctaaactg aaagttaccaaaggtggtccgctgccgttcgcttgggacatcctgt ccccgcagttccagtacggttccaaagcttacgttaaacacccggc tgacatcccggactacctgaaactgtccttcccggaaggtttcaaa tgggaacgtgttatgaacttcgaagacggtggtgttgttaccgtta cccaggactcctccctgcaagacggtgagttcatctacaaagttaa actgcgtggtaccaacttcccgtccgacggtccggttatgcagaaa aaaaccatgggttgggaagcttccaccgaacgtatgtacccggaag acggtgctctgaaaggtgaaatcaaaatgcgtctgaaactgaaaga cggtggtcactacgacgctgaagttaaaaccacctacatggctaaa aaaccggttcagctgccgggtgcttacaaaaccgacatcaaactgg acatcacctcccacaacgaagactacaccatcgttgaacagtacga acgtgctgaaggtcgtcactccaccggtgcttaataacgctgatag tgctagtgtagatcgc | ||
sequence output |
ATGGCCAGCAGCGAGGACGTCATCAAGGAGTTCATGAGGTTTAAGG
TCCGCATGGAGGGTTCGGTCAACGGTCATGAATTCGAGATCGAGGG
TGAAGGCGAGGGCCGCCCGTACGAAGGTACCCAGACCGCTAAGCTC
AAAGTGACGAAGGGAGGGCCATTGCCCTTCGCCTGGGATATTCTCT
CTCCCCAGTTCCAGTACGGAAGCAAAGCTTATGTCAAACACCCTGC
TGACATTCCTGACTACTTGAAACTATCCTTCCCCGAGGGTTTCAAA
TGGGAACGGGTCATGAACTTTGAAGACGGTGGCGTTGTTACTGTTA
CCCAGGACTCGTCATTGCAGGACGGTGAATTTATCTACAAGGTCAA
ACTACGTGGAACCAACTTCCCCTCCGATGGCCCTGTTATGCAGAAG
AAGACTATGGGTTGGGAGGCTTCCACTGAGCGCATGTACCCTGAAG
ATGGTGCCCTCAAGGGCGAAATAAAAATGCGCCTAAAGCTTAAAGA
CGGCGGCCACTACGATGCTGAGGTTAAAACTACATACATGGCCAAG
AAGCCTGTGCAACTACCCGGTGCTTATAAGACGGACATCAAGCTTG
ACATTACCTCCCACAATGAAGACTACACTATCGTCGAACAATATGA
GCGTGCTGAGGGCAGGCACTCTACCGGTGCTTAGTAGCGGTAATGA
TGCTAGTGCAGGTCT |
||
protected enzyme cutting site | ApaI GGGCCC |
BamHI GGATCC |
Bg1II AGATCT |
codon | original numbers | original proportion | final numbers | final proportion |
AAA | 22 | 0.09 | 9 | 0.04 |
AAC | 4 | 0.02 | 3 | 0.01 |
AAG | 0 | 0.00 | 13 | 0.06 |
AAT | 0 | 0.00 | 1 | 0.00 |
ACA | 0 | 0.00 | 1 | 0.00 |
ACC | 14 | 0.06 | 6 | 0.03 |
ACG | 0 | 0.00 | 2 | 0.01 |
ACT | 0 | 0.00 | 5 | 0.02 |
AGA | 1 | 0.00 | 0 | 0.00 |
AGC | 0 | 0.00 | 3 | 0.01 |
AGG | 0 | 0.00 | 3 | 0.01 |
AGT | 0 | 0.00 | 0 | 0.00 |
ATA | 0 | 0.00 | 1 | 0.00 |
ATC | 9 | 0.04 | 5 | 0.02 |
ATG | 9 | 0.04 | 9 | 0.04 |
ATT | 0 | 0.00 | 3 | 0.01 |
CAA | 1 | 0.00 | 2 | 0.01 |
CAC | 5 | 0.02 | 4 | 0.02 |
CAG | 7 | 0.03 | 6 | 0.03 |
CAT | 0 | 0.00 | 1 | 0.00 |
CCA | 0 | 0.00 | 1 | 0.00 |
CCC | 0 | 0.00 | 5 | 0.02 |
CCG | 12 | 0.05 | 1 | 0.00 |
CCT | 0 | 0.00 | 5 | 0.02 |
CGA | 0 | 0.00 | 0 | 0.00 |
CGC | 1 | 0.00 | 4 | 0.02 |
CGG | 0 | 0.00 | 2 | 0.01 |
CGT | 9 | 0.04 | 2 | 0.01 |
CTA | 0 | 0.00 | 4 | 0.02 |
CTC | 0 | 0.00 | 3 | 0.01 |
CTG | 12 | 0.05 | 0 | 0.00 |
CTT | 0 | 0.00 | 2 | 0.01 |
GAA | 19 | 0.08 | 10 | 0.04 |
GAC | 14 | 0.06 | 10 | 0.04 |
GAG | 3 | 0.01 | 12 | 0.05 |
GAT | 0 | 0.00 | 4 | 0.02 |
GCA | 0 | 0.00 | 0 | 0.00 |
GCC | 0 | 0.00 | 4 | 0.02 |
GCG | 0 | 0.00 | 0 | 0.00 |
GCT | 12 | 0.05 | 8 | 0.03 |
GGA | 0 | 0.00 | 3 | 0.01 |
GGC | 0 | 0.00 | 8 | 0.03 |
GGG | 0 | 0.00 | 1 | 0.00 |
GGT | 23 | 0.10 | 11 | 0.05 |
GTA | 0 | 0.00 | 0 | 0.00 |
GTC | 0 | 0.00 | 7 | 0.03 |
GTG | 0 | 0.00 | 2 | 0.01 |
GTT | 14 | 0.06 | 5 | 0.02 |
TAA | 2 | 0.01 | 1 | 0.00 |
TAC | 11 | 0.05 | 8 | 0.03 |
TAG | 2 | 0.01 | 3 | 0.01 |
TAT | 0 | 0.00 | 3 | 0.01 |
TCA | 0 | 0.00 | 1 | 0.00 |
TCC | 12 | 0.05 | 4 | 0.02 |
TCG | 1 | 0.00 | 2 | 0.01 |
TCT | 0 | 0.00 | 3 | 0.01 |
TGA | 1 | 0.00 | 1 | 0.00 |
TGC | 1 | 0.00 | 2 | 0.01 |
TGG | 3 | 0.01 | 3 | 0.01 |
TGT | 1 | 0.00 | 0 | 0.00 |
TTA | 0 | 0.00 | 0 | 0.00 |
TTC | 10 | 0.04 | 7 | 0.03 |
TTG | 0 | 0.00 | 3 | 0.01 |
TTT | 0 | 0.00 | 3 | 0.01 |