Team:Groningen/protocols/Transformation
From 2013.igem.org
(Difference between revisions)
(16 intermediate revisions not shown) | |||
Line 23: | Line 23: | ||
<h2><i>B. subtilis </i>transformation</h2> | <h2><i>B. subtilis </i>transformation</h2> | ||
- | < | + | <H5>The Losick protocol is used</H5> |
- | + | 5 | |
- | + | Day 0: Streak out the Bacillus strain of use and plate this on an LB agar plate o/n at 37°C. | |
<p>Transformation (D-Day): | <p>Transformation (D-Day): | ||
- | <br>1. Pick up a nice big colony and drop it in | + | <br>1. Pick up a nice big colony and drop it in 2 ml of completed MC (1x) (see sub1). |
- | <br>2. Grow at | + | <br>2. Grow at 37°C for 5 hours (longer if the culture is not really turbid). |
- | <br>3. Mix | + | <br>3. Mix 400 µl of culture with DNA* in a fresh tube (i.e. 15 ml tubes loosely closed – aeration) |
<br>4. Grow the cells at 37°C for an additional 2 hours . | <br>4. Grow the cells at 37°C for an additional 2 hours . | ||
- | <br>5. Spread the complete | + | <br>5. Spread the complete 400 µl reaction mix on selective antibiotic plates, and incubate at 37°C overnight.<br/> |
<p> | <p> | ||
- | (*usually | + | (*usually 1 µl. Then 10 µl of Qiagen plasmid miniprep or <1 µl of chromosomal prep) |
<p> | <p> | ||
- | <br | + | <br><H5>Sub1: Competence medium (MC completed)</H5> |
- | <table | + | <table id="normal" width ="60%"> |
<tr> | <tr> | ||
<th>compound</th> | <th>compound</th> | ||
Line 48: | Line 48: | ||
<tr> | <tr> | ||
- | <td> | + | <td>MQ water</td> |
- | <td | + | <td>1.8 ml</td> |
<td></td> | <td></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
- | <td>10x MC ( | + | <td>10x MC (Sub2)</td> |
- | <td | + | <td>200 µl</td> |
<td>filter sterilized</td> | <td>filter sterilized</td> | ||
</tr> | </tr> | ||
Line 61: | Line 61: | ||
<tr> | <tr> | ||
<td>MgSO<sub>4</sub></td> | <td>MgSO<sub>4</sub></td> | ||
- | <td | + | <td>6.7 µl</td> |
<td>autoclaved</td> | <td>autoclaved</td> | ||
</tr> | </tr> | ||
Line 67: | Line 67: | ||
<tr> | <tr> | ||
<td>Tryptophan 1%</td> | <td>Tryptophan 1%</td> | ||
- | <td | + | <td>10 µl</td> |
- | <td>filter sterilized (stored in <br>aluminium foil</td> | + | <td>filter sterilized (stored in <br>aluminium foil)</td> |
</tr> | </tr> | ||
</table> | </table> | ||
- | <br | + | <br><p><H5>Sub2: MC 10x</H5> |
- | <table | + | <table id="normal" width="60%"> |
- | <tr> | + | <tr> |
- | < | + | <th>compound</th> |
- | < | + | <th>amount 10 ml</th> |
- | < | + | <th>amount 100 ml</th> |
- | </tr | + | </tr> |
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
+ | <tr> | ||
+ | <td>K<sub>2</sub>HPO<sub>4</sub></td> | ||
+ | <td>1.40 g</td> | ||
+ | <td>14.04 g</td> | ||
+ | </tr> | ||
- | < | + | <tr> |
- | < | + | <td>KH<sub>2</sub>PO<sub>4</sub></td> |
- | <tr> | + | <td>0.52 g</td> |
- | <td>Tri-Na Citrate</td> | + | <td>5.24 g</td> |
- | <td> | + | </tr> |
- | </tr> | + | |
- | <tr> | + | <tr> |
- | <td> | + | <td>Glucose</td> |
- | <td> | + | <td>2 g</td> |
- | </ | + | <td>20 g</td> |
- | </ | + | </tr> |
- | + | ||
+ | <tr> | ||
+ | <td>Tri-Na Citrate 300 mM <br>(Sub3)</td> | ||
+ | <td>1 ml</td> | ||
+ | <td>10 ml</td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td>Ferric NH<sub>4</sub> citrate <br>(Sub4)</td> | ||
+ | <td>0.1 ml</td> | ||
+ | <td>1 ml</td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td>Casein Hydrolysate <br></td> | ||
+ | <td>0.1 g</td> | ||
+ | <td>1 g</td> | ||
+ | </tr> | ||
- | |||
- | |||
<tr> | <tr> | ||
- | <td>Ferric NH4 citrate</td> | + | <td>Potassium Glutamate</td> |
- | <td>0 | + | <td>0.2 g</td> |
- | </tr> | + | <td>2 g</td> |
- | <tr> | + | </tr> |
- | <td> | + | |
- | <td> | + | </table> |
- | </tr> | + | |
+ | The complete mixture should be dissolved in 100 ml. First add 50 ml milliQ water and mix. When everything is dissolved add MQ water till 100 ml. Filter sterilize the complete mixture and store at -20°C. | ||
+ | |||
+ | |||
+ | <br><p><H5>Sub3: Tri-Na Citrate 300 mM </H5> | ||
+ | <table id="normal" width="60%"> | ||
+ | <tr> | ||
+ | <th>compound</th> | ||
+ | <th>amount</th> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td>Tri-Na Citrate</td> | ||
+ | <td>0.88 g</td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td>MQ water</td> | ||
+ | <td>10 ml</td> | ||
+ | </tr> | ||
+ | |||
+ | </table> | ||
+ | Wrap in aluminium foil and store at -20°C. | ||
+ | |||
+ | <br><p><H5>Sub4: Ferric NH4 citrate</H5> | ||
+ | <table id="normal" width="60%"> | ||
+ | <tr> | ||
+ | <th>compound</th> | ||
+ | <th>amount</th> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td>Ferric NH<sub>4</sub></td> | ||
+ | <td>0.22 g</td> | ||
+ | </tr> | ||
+ | |||
+ | <tr> | ||
+ | <td>MQ water</td> | ||
+ | <td>10 ml</td> | ||
+ | </tr> | ||
</table> | </table> | ||
- | Wrap in aluminium | + | Wrap in aluminium foil and store at -20°C. |
</div> | </div> |
Latest revision as of 23:42, 4 October 2013
B. subtilis transformation
The Losick protocol is used
5 Day 0: Streak out the Bacillus strain of use and plate this on an LB agar plate o/n at 37°C.Transformation (D-Day):
1. Pick up a nice big colony and drop it in 2 ml of completed MC (1x) (see sub1).
2. Grow at 37°C for 5 hours (longer if the culture is not really turbid).
3. Mix 400 µl of culture with DNA* in a fresh tube (i.e. 15 ml tubes loosely closed – aeration)
4. Grow the cells at 37°C for an additional 2 hours .
5. Spread the complete 400 µl reaction mix on selective antibiotic plates, and incubate at 37°C overnight.
(*usually 1 µl. Then 10 µl of Qiagen plasmid miniprep or <1 µl of chromosomal prep)
Sub1: Competence medium (MC completed)
compound | amount | treatment |
---|---|---|
MQ water | 1.8 ml | |
10x MC (Sub2) | 200 µl | filter sterilized |
MgSO4 | 6.7 µl | autoclaved |
Tryptophan 1% | 10 µl | filter sterilized (stored in aluminium foil) |
Sub2: MC 10x
compound | amount 10 ml | amount 100 ml |
---|---|---|
K2HPO4 | 1.40 g | 14.04 g |
KH2PO4 | 0.52 g | 5.24 g |
Glucose | 2 g | 20 g |
Tri-Na Citrate 300 mM (Sub3) |
1 ml | 10 ml |
Ferric NH4 citrate (Sub4) |
0.1 ml | 1 ml |
Casein Hydrolysate |
0.1 g | 1 g |
Potassium Glutamate | 0.2 g | 2 g |
Sub3: Tri-Na Citrate 300 mM
compound | amount |
---|---|
Tri-Na Citrate | 0.88 g |
MQ water | 10 ml |
Sub4: Ferric NH4 citrate
compound | amount |
---|---|
Ferric NH4 | 0.22 g |
MQ water | 10 ml |