Team:Groningen/protocols/PCR

From 2013.igem.org

(Difference between revisions)
 
(66 intermediate revisions not shown)
Line 22: Line 22:
<div class="mainContent">
<div class="mainContent">
-
<h1>PCR</h1>
+
<h2>PCR</h2>
-
<h3>Materials:</h3>
+
<h5>Materials:</h5>
<ul type="square">
<ul type="square">
<li>PCR tubes</li>
<li>PCR tubes</li>
-
<li>F- and R-primer</li>
 
-
<li>DNTPs</li>
 
-
<li>Phusion buffer</li>
 
<li>MQ water</li>
<li>MQ water</li>
 +
<li>DMSO 5%</li>
 +
<li>Phusion buffer</li>
 +
<li>DNTPs</li>
 +
<li>F- and R-primer</li>
<li>Phusion Polymerase</li>
<li>Phusion Polymerase</li>
<li>DNA template</li>
<li>DNA template</li>
</ul>
</ul>
-
<h3>PCR reaction mixture</h3>
+
 
-
<table border="1">
+
 
 +
<p>
 +
<br>
 +
<h5>PCR reaction mixture:</h5>
 +
<table id="normal" width="60%">
   <tr>
   <tr>
     <th>Component</th>
     <th>Component</th>
-
     <th>50&micro;l</th>
+
     <th>50 ml</th>
-
     <th>Final concentration</th>
+
     <th>Final concentration</th>  
   </tr>
   </tr>
   <tr>
   <tr>
     <td>MQ water</td>
     <td>MQ water</td>
-
     <td ALIGN=CENTER>up to 50&micro;l</td>
+
     <td>up to 50 &micro;l</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 51: Line 56:
   <tr>
   <tr>
     <td>5x Phusion Buffer</td>
     <td>5x Phusion Buffer</td>
-
     <td ALIGN=CENTER>10&micro;l</td>
+
     <td>10 &micro;l</td>
     <td>1x</td>
     <td>1x</td>
   </tr>
   </tr>
Line 57: Line 62:
   <tr>
   <tr>
     <td>DMSO 5%</td>
     <td>DMSO 5%</td>
-
     <td ALIGN=CENTER>1.5&micro;l</td>
+
     <td>1.5 &micro;l</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
   <tr>
   <tr>
-
     <td>10mM dNTPs</td>
+
     <td>10 mM dNTPs</td>
-
     <td ALIGN=CENTER>1&micro;l</td>
+
     <td>1 &micro;l</td>
-
     <td>200&micro;M</td>
+
     <td>200 &micro;M</td>
   </tr>
   </tr>
   <tr>
   <tr>
     <td>primer F</td>
     <td>primer F</td>
-
     <td ALIGN=CENTER>2.5&micro;l</td>
+
     <td>2.5 &micro;l</td>
-
     <td>0.5&micro;M</td>
+
     <td>0.5 &micro;M</td>
   </tr>
   </tr>
   <tr>
   <tr>
     <td>primer R</td>
     <td>primer R</td>
-
     <td ALIGN=CENTER>2.5&micro;l</td>
+
     <td>2.5 &micro;l</td>
-
     <td>0.5&micro;M</td>
+
     <td>0.5 &micro;M</td>
   </tr>
   </tr>
   <tr>
   <tr>
     <td>template DNA</td>
     <td>template DNA</td>
-
     <td ALIGN=CENTER>1&micro;l</td>
+
     <td>1 &micro;l</td>
-
     <td>&sim;1ng</td>
+
     <td>&sim;1 ng</td>
   </tr>
   </tr>
   <tr>
   <tr>
-
     <td>Phusion Polymerase <br>2U/&micro;l</td>
+
     <td>Phusion Polymerase <br>2 U/&micro;l</td>
-
     <td ALIGN=CENTER>0.3&micro;l</td>
+
     <td>0.3 &micro;l</td>
-
     <td>0.01U/&micro;l</td>
+
     <td>0.01 U/&micro;l</td>
   </tr>
   </tr>
</table>  
</table>  
-
<h3>Cycling instructions:</h3>
+
<p>
-
<table border="1">
+
<br>
 +
<h5>Cycling instructions:</h5>
 +
<table id="normal" width="60%">
   <tr>
   <tr>
     <th>Temperature</th>
     <th>Temperature</th>
Line 103: Line 110:
   <tr>
   <tr>
     <td>98&deg;C</td>
     <td>98&deg;C</td>
-
     <td>2min</td>
+
     <td>2 min</td>
-
     <td>1td>
+
     <td>1</td>
   </tr>
   </tr>
   <tr>
   <tr>
     <td>98&deg;C</td>
     <td>98&deg;C</td>
-
     <td>10sec</td>
+
     <td>10 sec</td>
     <td rowspan="3">34</td>
     <td rowspan="3">34</td>
   </tr>
   </tr>
Line 115: Line 122:
   <tr>
   <tr>
     <td>T<sub>m</sub>-5&deg;C</td>
     <td>T<sub>m</sub>-5&deg;C</td>
-
     <td>25sec</td>
+
     <td>25 sec</td>
   </tr>
   </tr>
   <tr>
   <tr>
     <td>72&deg;C</td>
     <td>72&deg;C</td>
-
     <td>30sec/kb</td>
+
     <td>30 sec/kb</td>
   </tr>
   </tr>
   <tr>
   <tr>
     <td>72&deg;C</td>
     <td>72&deg;C</td>
-
     <td>10min</td>
+
     <td>10 min</td>
     <td>1</td>
     <td>1</td>
   </tr>
   </tr>

Latest revision as of 23:25, 4 October 2013

PCR

Materials:
  • PCR tubes
  • MQ water
  • DMSO 5%
  • Phusion buffer
  • DNTPs
  • F- and R-primer
  • Phusion Polymerase
  • DNA template


PCR reaction mixture:
Component 50 ml Final concentration
MQ water up to 50 µl
5x Phusion Buffer 10 µl 1x
DMSO 5% 1.5 µl
10 mM dNTPs 1 µl 200 µM
primer F 2.5 µl 0.5 µM
primer R 2.5 µl 0.5 µM
template DNA 1 µl ∼1 ng
Phusion Polymerase
2 U/µl		 0.3 µl 0.01 U/µl


Cycling instructions:
Temperature Time Number of Cycles
98°C 2 min 1
98°C 10 sec 34
Tm-5°C 25 sec
72°C 30 sec/kb
72°C 10 min 1
4°C ∞ 1

Reference: http://www.thermoscientificbio.com/uploadedFiles/Resources/f-530s-product-information.pdf