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| - | You are provided with this team page template with which to start the iGEM season. You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki. You can find some examples <a href="https://2008.igem.org/Help:Template/Examples">HERE</a>.
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| - | {| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
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| - | !align="center"|[[Team:Shenzhen_BGIC_0101|Home]]
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| - | !align="center"|[[Team:Shenzhen_BGIC_0101/Team|Team]]
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| - | !align="center"|[https://igem.org/Team.cgi?year=2013&team_name=Shenzhen_BGIC_0101 Official Team Profile]
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| - | !align="center"|[[Team:Shenzhen_BGIC_0101/Project|Project]]
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| - | !align="center"|[[Team:Shenzhen_BGIC_0101/Parts|Parts Submitted to the Registry]]
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| - | !align="center"|[[Team:Shenzhen_BGIC_0101/Modeling|Modeling]]
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| - | !align="center"|[[Team:Shenzhen_BGIC_0101/Notebook|Notebook]]
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| - | !align="center"|[[Team:Shenzhen_BGIC_0101/Safety|Safety]]
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| - | !align="center"|[[Team:Shenzhen_BGIC_0101/Attributions|Attributions]]
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| | | | |
| - | == Project Details== | + | <style type="text/css">.recentcomments a{display:inline !important;padding:0 !important;margin:0 !important;}</style> |
| | | | |
| | + | </head> |
| | + | <body class="blog developer-wanted"> |
| | + | <div id="fl_menu"> |
| | + | <div class="label"><a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Project#overview">overview</a></div> |
| | + | <div class="label"><a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Project#plug-in">plug-in</a></div> |
| | + | <div class="label"><a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Project#tutorial">tutorial</a></div> |
| | | | |
| | + | </div> |
| | + | <div id="wrap" style="background:url(https://static.igem.org/mediawiki/igem.org/f/fb/Backgd.jpg);"> |
| | + | <header class="light"> |
| | + | <a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Home" id="logo">logo</a> |
| | + | |
| | + | <nav class="menu-main-navigation-container"><a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Home" class="menu-item-20 menu-item menu-item-type-post_type menu-item-object-page">Home</a> <a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Team" class="menu-item-19 menu-item menu-item-type-post_type menu-item-object-page">Team</a> <a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Project" class="menu-item-18 menu-item menu-item-type-post_type menu-item-object-page current-menu-item">Project</a> <a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/Requirements" class="menu-item-17 menu-item menu-item-type-post_type menu-item-object-page">Requirements</a> <a href="https://2013.igem.org/Team:Shenzhen_BGIC_0101/HumanPractices" class="menu-item-15 menu-item menu-item-type-post_type menu-item-object-page">Human Practices</a> </nav> |
| | + | <a href="https://2013.igem.org/Main_Page" id="logo1">logo</a> |
| | + | </header> |
| | | | |
| | | | |
| | + | <div id="page-header" style="background: url(https://static.igem.org/mediawiki/igem.org/b/b0/Za.jpg);height: 300px;box-shadow: 4px 3px 25px #000;"> |
| | + | <h1></h1> |
| | + | </div> |
| | + | <br/> |
| | + | <a name="overview"></a> |
| | + | <section id="blog" class="container"> |
| | + | |
| | + | <article class="clearfix" style="background: rgba(29, 28, 28, 0.79);"> |
| | + | <div id="post-1815" class="post-1815 post type-post status-publish format-standard hentry category-evolution" style="background: transparent;color: #E6E6E6;"> |
| | + | <img width="1000" height="315" src="https://static.igem.org/mediawiki/2013/0/00/Test-main.png" class="attachment-blog-thumb wp-post-image" /> <div class="text"> |
| | + | <h2>Genovo</h2> |
| | + | |
| | + | <div class="post-content" style="color: #ADFFCF;"><hr/><p>Genovo is a Computer-Aided Design (CAD) tool used for denovo design of genome. The current version consists of 4 parts. </p> |
| | + | <p>The first, Chromosome Construction will grap genes in a common pathway and chromosome features to build a new genome and let user to define the order and orientation in drap-drop way. The second, Nucleotide Modification will optimize and soften the sequence of CDSs. It also help design the CRIPSR sites so that we can silence the wild type genes. The third, Chromosome Segmentation will cut chromosome into pieces and add 3A & Gibson & Goldengate & Homologous Recombination adaptors to the pieces automatically for assembly. The last one, OLS Design will guide users to gain the chromosome by microarray. </p> |
| | + | <p>Genovo will enable user to design their innovative chromosome as their wishes and further the research on genome on pathway level.</p> |
| | + | <br/><br/> |
| | + | <h2>Plug-in</h2> |
| | + | <hr/> |
| | + | <a name="plug-in"></a> |
| | + | <a name="plug1"></a> |
| | + | <p>NeoChr</p> |
| | + | <p>Neochr module would assist users to grab related genes in different pathways manually, to rewire genes’ relationship logically*, and to replace genes with ortholog that score higher*.</p><hr/> |
| | + | <a name="plug2"></a> |
| | + | <p>NucleoMod</p> |
| | + | <p>NucleoMod is a module to modity CDS sequence of genes which generated by Neochr module. This module contains 5 plugins: CRISPR design, erase enzyme site, create enzyme site, codon optimization, repeat smash. All of these plugin is allow user to change or optimize the gene. After NucleoMod operation, the next step is SegmMan to design synthestic method according to the length of chromosome.</p><hr/> |
| | + | <a name="plug3"></a> |
| | + | <p>SegmMan</p> |
| | + | <p>This module will grab genes’ detail information in KEGG Makeup Language (KGML) file which can be downloaded in KEGG or get through KEGG API, and it will establish a new standard for data transmission which will convert XML format into JSON format and simplify structures. Furthermore, this module will export genes’ list and its relationships. Choose one pathway and this module will visualize the pathway and rebuild it in the level of genes.</p><hr/> |
| | + | <hr/> |
| | + | </div> |
| | + | </div> |
| | + | |
| | + | </div> |
| | + | |
| | + | </article> |
| | + | |
| | + | </section> |
| | + | <a name="tutorial"></a> |
| | + | <section id="blog" class="container"> |
| | + | |
| | + | <article class="clearfix" style="background: rgba(29, 28, 28, 0.79);"> |
| | + | <div id="post-1815" class="post-1815 post type-post status-publish format-standard hentry category-evolution" style="background: transparent;color: #E6E6E6;"> |
| | + | <div class="text"> |
| | + | |
| | + | <div class="post-content" style="color: #ADFFCF;"><hr/> |
| | + | </div> |
| | + | </div> |
| | + | |
| | + | </div> |
| | + | |
| | + | </article> |
| | + | |
| | + | </section> |
| | + | <div class="push"></div> |
| | + | </div><!-- wrapper --> |
| | + | <footer style> |
| | + | <div class="container clearfix"> |
| | + | <div class="seven columns" id="footer-contact"> |
| | + | <h3>contact us</h3> |
| | + | <p>BGI-Shenzhen, Beishan Industrial Zone<br /> |
| | + | Yantian District, Shenzhen, 518083, China</p> |
| | + | <p> <span>email:</span><br /> |
| | + | <a href="mailto:gongjianhui@genomics.com">gongjianhui@genomics.com</a></p> |
| | + | </div> |
| | + | <div class="four columns" id="footer-project"> |
| | + | <h3>sponsor</h3> |
| | + | <p>BGIC<br/></p> |
| | + | </div> |
| | + | <div class="five columns" id="footer-newsletter"> |
| | + | <a href="https://2013.igem.org/Main_Page" ><img width="150" height="120" src="https://static.igem.org/mediawiki/2013/0/02/TB_IGEM_official_logo.png" /></a> |
| | + | </div> |
| | + | </div> |
| | + | </footer> |
| | | | |
| - | === Part 2 ===
| |
| | | | |
| | + | <script src="https://2013.igem.org/Team:Shenzhen_BGIC_0101/aaa?action=raw&ctype=text/javascript"></script> |
| | | | |
| | | | |
| - | | + | </body> |
| - | | + | </html> |
| - | === The Experiments ===
| + | |
| - | | + | |
| - | | + | |
| - | | + | |
| - | | + | |
| - | === Part 3 ===
| + | |
| - | | + | |
| - | | + | |
| - | | + | |
| - | | + | |
| - | == Results ==
| + | |
"
