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Team:Paris Saclay/modeling/fnr0.xml
From 2013.igem.org
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<sim> | <sim> | ||
| - | <yscale> | + | <yscale>1300</yscale> |
<volume>0.7</volume> <!-- 0.7 micrometres cube --> | <volume>0.7</volume> <!-- 0.7 micrometres cube --> | ||
| Line 11: | Line 11: | ||
<!-- Molecule declaration curve_show="true" curve_color="#AAAA00" --> | <!-- Molecule declaration curve_show="true" curve_color="#AAAA00" --> | ||
| - | <molecule name="FNR" quantity=" | + | <molecule name="FNR" quantity="10000" adjustable="true"/> |
<molecule name="O2" const="true" adjustable="true" quantity="5000"/> | <molecule name="O2" const="true" adjustable="true" quantity="5000"/> | ||
<molecule name="FNR_ox" adjustable="true"/> | <molecule name="FNR_ox" adjustable="true"/> | ||
Revision as of 16:55, 8 September 2013
<?xml version="1.0" encoding="ISO-8859-1"?>
<sim>
<yscale>1300</yscale>
<volume>0.7</volume> <timestep>0.0001</timestep> <alpha>7.4e-7</alpha>
<molecule name="FNR" quantity="10000" adjustable="true"/>
<molecule name="O2" const="true" adjustable="true" quantity="5000"/>
<molecule name="FNR_ox" adjustable="true"/>
<molecule name="Pfnr_activator" quantity="1" adjustable="true"/>
<molecule name="Pfnr_activator_bond" adjustable="true"/>
<molecule name="GP" curve_show="true" curve_color="#00AA00" adjustable="true"/>
<molecule name="Pfnr_repressor" quantity="1" adjustable="true"/>
<molecule name="Pfnr_repressor_bond" adjustable="true"/>
<molecule name="BP" curve_show="true" curve_color="#0000FF" adjustable="true"/>
<reaction probability="0.2">
<in>FNR</in> <in>O2</in> <out>FNR_ox</out>
</reaction> <reaction probability="0.002">
<in>FNR_ox</in> <out>O2</out> <out>FNR</out>
</reaction>
<reaction probability="1.2">
<in>FNR</in> <in>Pfnr_activator</in> <out>Pfnr_activator_bond</out>
</reaction> <reaction probability="0.005">
<in>Pfnr_activator_bond</in> <out>Pfnr_activator</out> <out>FNR</out>
</reaction> <reaction probability="0.025">
<in>Pfnr_activator_bond</in> <out>Pfnr_activator_bond</out> <out>GP</out>
</reaction>
<reaction probability="0.9">
<in>FNR</in> <in>Pfnr_repressor</in> <out>Pfnr_repressor_bond</out>
</reaction> <reaction probability="0.001">
<in>Pfnr_repressor_bond</in> <out>Pfnr_repressor</out> <out>FNR</out>
</reaction> <reaction probability="0.018">
<in>Pfnr_repressor</in> <out>Pfnr_repressor</out> <out>BP</out>
</reaction>
<reaction probability="0.0001">
<in>GP</in>
</reaction> <reaction probability="0.0001">
<in>BP</in>
</reaction>
</sim>
