Team:SUSTC-Shenzhen-B/circuit.html

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(Difference between revisions)
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                          <li><a href="clotho.html">Clotho</a></li>
                          <li><a href="clotho.html">Clotho</a></li>
                          <li><a href="safty.html">Safety Form</a></li>
                          <li><a href="safty.html">Safety Form</a></li>
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                          <li><a href="technique.html">Technique Standard</a></li>
                          <li><a href="achievement.html">Achievement</a></li>
                          <li><a href="achievement.html">Achievement</a></li>
                                                                     </ul>
                                                                     </ul>
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                         <ul class="dropdown-menu">
                         <ul class="dropdown-menu">
                          <li><a href="team.html">Team Member</a></li>
                          <li><a href="team.html">Team Member</a></li>
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                          <li><a href="lgd.html">Contribution</a></li>
 
                          <li><a href="sustc.html">About SUSTC</a></li>
                          <li><a href="sustc.html">About SUSTC</a></li>
                          <li><a href="notebook.html">Notebook</a></li>
                          <li><a href="notebook.html">Notebook</a></li>
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                          <li><a href="thank.html">Special Thanks</a></li>
                                                                     </ul>
                                                                     </ul>
                                                         </li>
                                                         </li>
                                                         <li class="dropdown"><a href="#" class="dropdown-toggle" data-toggle="dropdown">Human Practice<b class="caret"></b></a>
                                                         <li class="dropdown"><a href="#" class="dropdown-toggle" data-toggle="dropdown">Human Practice<b class="caret"></b></a>
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                          <li><a href="team.html">Team Member</a></li>
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                          <li><a href="meeting.html">Exchange Meeting</a></li>
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                          <li><a href="lgd.html">Contribution</a></li>
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                          <li><a href="publicity.html">Publicity</a></li>
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                          <li><a href="sustc.html">About SUSTC</a></li>
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                          <li><a href="lecture.html">Lecture</a></li>
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                          <li><a href="notebook.html">Notebook</a></li>
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                                                                     </ul>
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                                                         </li>
                                                         </li>
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  <li><a href="thank.html">Special Thanks</a></li>
 
</ul>
</ul>
      </div>
      </div>
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                                                 <li class="nav-header">Circuit Registry</li>
                                                 <li class="nav-header">Circuit Registry</li>
   <li class="active"><a href="#introduction">Introduction</a></li>
   <li class="active"><a href="#introduction">Introduction</a></li>
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                                                 <li><a href="#mindroad">Mind Road</a></li>
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                                                 <li><a href="#database">Database</a></li>
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                                                 <li><a href="#lgd">LGD</a></li>
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                                                 <li><a href="#result">Current Result</a></li>
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                                                 <li><a href="#tutorial">Tutorail</a></li>
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                                                 <li><a href="#list">Circuit List</a></li>
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                                                <li><a href="#future">Future Plan</a></li>
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  <li><a href="#feedback">Feedback</a></li>
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</ul>
</ul>
</div>
</div>
<div class="span9">
<div class="span9">
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<h2 id="introduction">Introduction</h2>
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                                        <div id="introduction">
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<h3>Mind Road</h3>
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<h2>Introduction</h2>
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<p>A useful net structural mind map to help users know what the existing synthetic biology projects and what else they can do.</p>
+
<p>The Mind Road is one of the major functions of Biomiao platform. All the circuits that have successfully submitted can be found there. This web application aims at assisting people to find the synthetic biological projects they are interested in. The app is meaningful, because it provides a classification for divergent thinking. We build up the Mind Road network through scanning for over a hundred of projects that designed and functioned (partially) the genetic circuits as well as simulating a brainstorm so as to establish the Mind Road more practical and realistic.</p>
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<h3>LGD</h3>
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</div>
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<p>Short for logical genetic designer, LGD is a genetic circuit CAD that can present the detail information of the engineering bacteria and “calculate” the relationship of related parts based on our database.</p>
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                                        <div id="database">
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<h3>TTEC</h3>
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<h2>Introduction</h2>
-
<p>TTEC is the abbreviation of Transcriptional Terminator Efficiency Calculator. It is the last year’s project of SUSTC and can calculate the efficiency of a terminator. TTEC plays an important role of building up our synthetic biology community in the future.</p>
+
<p>All the data is stored in our MySQL server database. In order to dynamically update data in a safer way, we choose MyISAM to be the engine of our database. We try to establish a technique standard for the data structure. A complete project on Biomiao must contain following essential information</p>
 +
                                        <h5>Part-I: Basic information</h5>
 +
                                        <p>Project name, Author(s), Year, Wiki (paper) –Link, Description [Around 150 words], Project result [representative diagram or some other images (enclosed in the annex)], Reference [Write all the relative papers you’ve referenced]</p>
 +
                                        <h5>Part-II: Genetic Circuit information</h5>
 +
                                        <p>Circuit description [How your circuit works and what are the subunits (promoter, operon, RBS, coding, domain, terminator…) of this circuit, Circuit diagram [enclosed in the annex], Subparts information: [Give us a brief description about the parts you designed or used in this project like the Biobrick ID, the subparts (if have), the functions)].</p>
 +
                                        <h5>Part-III: Lab process / Major methods</h5>
 +
                                        <p>Equipment [List the machines or devices you used while processing the experiment], Material [List all the medium (each component should be listed out), strains & plasmids you have used in the experiment], Procedure [List the procedures as simple as possible in order. Or you can just write some key processes (or methods) of your experiments].</p>
 +
                                        <h5>Annotation</h5>
 +
                                        <p>1. The information that mention above is also the submit format. You can go to the submit page to upload your project.</p>
 +
                                        <p>2. We develop a new technique Standard: Genetic Circuit Standard (version1.0). To see more details, you can click here.</p>
 +
</div>
 +
 
 +
                                        <div id="result">
 +
<h2>Current Result</h2>
 +
<p>At present, we’ve stored approximately 80 projects’ information. We have deleted some unfinished projects and as a result, there might have some empty nodes in the Mind Road. Most projects are coming from previous iGEM team. And we’ve invited some 2013 iGEM teams to submit their projects on the Biomiao platform (Peking, Shenzhen-BGI, SYSU, XMU, HKUST, etc.). We eagerly expect all the 2013 iGEMers to join in this platform and share their projects. We are now still sending more and more invitation Email to the 2013 iGEM teams.</p>
 +
</div>
 +
 
 +
                                        <div id="list">
 +
<h2>Circuit List</h2>
 +
<p>The Circuit List is another way to reveal all the project in a specific order. In this way, the user can directly scan all the project in a list instead of click the sorted bubbles in Mind Road.</p>
 +
</div>
-
<h2 id="circuit">Circuit Registry</h2>
 
-
                                        <h4>Mind Road</h4>
 
-
<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
 
-
                                        <h4>Circuit List</h4>
 
-
<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
 
-
<h2 id="lgd">LGD</h2>
 
-
<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
 
-
<h2 id="ttec">TTEC on Clotho</h2>
 
-
<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
 
-
<h2 id="tutorial">Tutorial</h2>
 
-
<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
 
-
<h2 id="feedback">Feedback</h2>
 
-
<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
 
-
<h2 id="safety">Safety Form</h2>
 
-
<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
 
-
<h2 id="achievement">Achievement</h2>
 
-
<p>We want to establish a user-friendly web2.0 platform which can function as both a handy tool kit and a community. There are mainly 3 reasons that we choose a webpage instead of a native application. First, current software need to users don’t need to download our software. Second, a webpage is not limited with the system, which means users can log in our webpage wherever they can reach the internet. And the last, all the information can be stored by the cloud, so users don’t have to worry about their information being lost.</p>
 
</div>
</div>
</div>
</div>

Revision as of 13:25, 27 September 2013

Introduction

The Mind Road is one of the major functions of Biomiao platform. All the circuits that have successfully submitted can be found there. This web application aims at assisting people to find the synthetic biological projects they are interested in. The app is meaningful, because it provides a classification for divergent thinking. We build up the Mind Road network through scanning for over a hundred of projects that designed and functioned (partially) the genetic circuits as well as simulating a brainstorm so as to establish the Mind Road more practical and realistic.

Introduction

All the data is stored in our MySQL server database. In order to dynamically update data in a safer way, we choose MyISAM to be the engine of our database. We try to establish a technique standard for the data structure. A complete project on Biomiao must contain following essential information

Part-I: Basic information

Project name, Author(s), Year, Wiki (paper) –Link, Description [Around 150 words], Project result [representative diagram or some other images (enclosed in the annex)], Reference [Write all the relative papers you’ve referenced]

Part-II: Genetic Circuit information

Circuit description [How your circuit works and what are the subunits (promoter, operon, RBS, coding, domain, terminator…) of this circuit, Circuit diagram [enclosed in the annex], Subparts information: [Give us a brief description about the parts you designed or used in this project like the Biobrick ID, the subparts (if have), the functions)].

Part-III: Lab process / Major methods

Equipment [List the machines or devices you used while processing the experiment], Material [List all the medium (each component should be listed out), strains & plasmids you have used in the experiment], Procedure [List the procedures as simple as possible in order. Or you can just write some key processes (or methods) of your experiments].

Annotation

1. The information that mention above is also the submit format. You can go to the submit page to upload your project.

2. We develop a new technique Standard: Genetic Circuit Standard (version1.0). To see more details, you can click here.

Current Result

At present, we’ve stored approximately 80 projects’ information. We have deleted some unfinished projects and as a result, there might have some empty nodes in the Mind Road. Most projects are coming from previous iGEM team. And we’ve invited some 2013 iGEM teams to submit their projects on the Biomiao platform (Peking, Shenzhen-BGI, SYSU, XMU, HKUST, etc.). We eagerly expect all the 2013 iGEMers to join in this platform and share their projects. We are now still sending more and more invitation Email to the 2013 iGEM teams.

Circuit List

The Circuit List is another way to reveal all the project in a specific order. In this way, the user can directly scan all the project in a list instead of click the sorted bubbles in Mind Road.

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