Team:NTU Taiwan/index.html

From 2013.igem.org

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                             </li>
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                            <li><a href="#Parts">Parts</a></li>
                             <li><a href="#Modeling">Modeling</a></li>
                             <li><a href="#Modeling">Modeling</a></li>
                             <li><a href="#Safety">Safety</a></li>
                             <li><a href="#Safety">Safety</a></li>
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     <script type="text/template" id="humanpractice">
     <script type="text/template" id="humanpractice">
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        <section class="red-background">
 +
            <h1 class="header">Cooperation</h1>
 +
        </section>
 +
 +
        <div class="container divide essay">
 +
            <ul style="list-style:none">
 +
                <li>
 +
                    Collaborate with Perdue iGEM team: <br/><br/>
 +
                    <p>We collaborated with Perdue iGEM team to design a better version of datasheet with them. We complete their questionnaire and provide some idea.</p>
 +
                    <p>Following is one of the beta-version of <b>Purdue iGEM team's</b> datasheet. </p>
 +
                    <embed src="https://static.igem.org/mediawiki/igem.org/c/c7/Datasheet_Composite_Part_Example.pdf" style="width: 100%; height: 500px"></embed>
 +
                </li>
 +
                <br/>
 +
 +
                <li>Kyoto iGEM team: <br/><br/>
 +
                    <div class="row">
 +
                        <div class="col-md-7" style="margin-top: 30px">
 +
                            <p>We help Kyoto iGEM team to charaterise their parts. They sent 13 parts to us. First, we transformed their parts into <i>E.coli</i> and do sequence. Then We keep discussing how to design the construction and which gene should we use in the characterisation.</p>
 +
                        </div>
 +
 +
                        <div class="col-md-5">
 +
                            <img class="img-responsive" src="https://static.igem.org/mediawiki/igem.org/6/6d/HUMANPRACTICE_2.jpg" alt-src="./images/Human_practice/HUMANPRACTICE_2.jpg" style="margin-right: 30px">
 +
                        </div>
 +
                    </div>
 +
                </li>
 +
               
 +
                <li>NTU_Taida iGEM team: <br/><br/>
 +
                    <div class="row">
 +
                        <div class="col-md-11" style="margin-top: 30px">
 +
                            <p>Because we are in the same university, we exchange a lot of information to each other. For expample, they shared the experience in iGEM compeitiotn to us and we help them conduct some experiment like preparing competent cells and transformation.</p>
 +
                            <p>In addition, we help each other to charaterise the parts. For example, they help us to check the expression of SrUCP protein(BBa_K1125000).</p>
 +
                            <p>We also help them in the part "BBa_K1157013". This part is very important, because this biosensor is constructed to sense C-4 AHL molecules through a method different from BBa_K1157012. This time when AHL molecules are sensed, it activates Rhl promoter, which initiates the production of CI. Therefore, CI inhibits pCI and the expression of reporter mCherry is stopped. When compared to control group, the results will be expected to express lower fluorescence level when there is existence of AHL molecules.</p>
 +
                        </div>
 +
                        <div class="row text-center">
 +
                            <img class="img-responsive"src="https://static.igem.org/mediawiki/igem.org/6/66/Cooperation_taida.png" alt-src="./images/cooperation_taida.jpg" style="margin-right: 30px">
 +
                            </div>
 +
                </li>
 +
            </ul>
 +
        </div>
 +
 +
        <section class="yellow-background">
 +
            <h1 class="header">App</h1>
 +
        </section>
 +
        <div class="container divide essay">
 +
            <div class="row text-center" style="margin-left: 20px; margin-right: 20px">
 +
                <h3>Let us introduce our App in this short film :)</h3><br/>
 +
                <iframe id="appMovie" style="width=75%;" src="http://www.youtube.com/embed/NjNNvrgOozA" frameborder="0" allowfullscreen></iframe><br/>
 +
            </div>
 +
        </div>
 +
        <div class="container divide essay">
 +
            <p>
 +
                As we known, for most of people who has never learned synthetic biology, it&lsquo;s a magical and crazy idea to take biological parts as the electronic parts. Moreover, someone might be scaried about this technique just like &quot;Witch Hunt&quot; in middle centry, because he don&lsquo;t know what is it.
 +
            </p>
 +
            <p>
 +
                When we talk about synthetic biology, most of our friends will connect this technique with &quot;Genome Modified Organism&quot; and &quot;Terrible Biological Weapon&quot;. They have antagonistic feeling in the first time because they don&lsquo;t know about it. However, beyond our expectation that they still feeling unbelieveble after our explaination......
 +
            </p>
 +
            <p>
 +
                In hence, we decide to make an App to teach them the basic biotech concept and let them know the synthetic biology is not so hazardous. The main idea of this game is let players know if they don&lsquo;t care about the biosafety, they will let environment endanger. But if they are cautious in their operation, most of the results will under their control.
 +
            </p>
 +
        </div>
 +
         <section class="blue-background">
         <section class="blue-background">
             <h1 class="header">Conference</h1>
             <h1 class="header">Conference</h1>
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             </div>
         </div>
         </div>
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    </script>
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        <section class="yellow-background">
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        <h1 class="header">App</h1>
+
-
        </section>
+
-
        <div class="container divide essay">
+
-
        <div class="row text-center" style="margin-left: 20px; margin-right: 20px">
+
-
        <h3>Let us introduce our App in this short film :)</h3><br/>
+
-
        <iframe id="appMovie" style="width=75%;" src="http://www.youtube.com/embed/NjNNvrgOozA" frameborder="0" allowfullscreen></iframe><br/></div></div>
+
-
        <div class="container divide essay">
+
-
            <p>
+
-
                As we known, for most of people who has never learned synthetic biology, it&lsquo;s a magical and crazy idea to take biological parts as the electronic parts. Moreover, someone might be scaried about this technique just like &quot;Witch Hunt&quot; in middle centry, because he don&lsquo;t know what is it.
+
-
            </p>
+
-
            <p>
+
-
                When we talk about synthetic biology, most of our friends will connect this technique with &quot;Genome Modified Organism&quot; and &quot;Terrible Biological Weapon&quot;. They have antagonistic feeling in the first time because they don&lsquo;t know about it. However, beyond our expectation that they still feeling unbelieveble after our explaination......
+
-
            </p>
+
-
            <p>
+
-
                In hence, we decide to make an App to teach them the basic biotech concept and let them know the synthetic biology is not so hazardous. The main idea of this game is let players know if they don&lsquo;t care about the biosafety, they will let environment endanger. But if they are cautious in their operation, most of the results will under their control.
+
-
            </p>
+
-
        </div>
+
-
       
+
-
        <section class="red-background">
+
-
            <h1 class="header">Cooperation</h1>
+
-
        </section>
+
-
 
+
-
        <div class="container divide essay">
+
-
            <ul style="list-style:style">
+
-
                <li>
+
-
                    Collaborate with Perdue iGEM team: <br/><br/>
+
-
                    <p>We collaborated with Perdue iGEM team to design a better version of datasheet with them. We complete their questionnaire and provide some idea.</p>
+
-
                    <p>Following is one of the beta-version of <b>Purdue iGEM team's</b> datasheet. </p>
+
-
                    <embed src="https://static.igem.org/mediawiki/igem.org/c/c7/Datasheet_Composite_Part_Example.pdf" style="width: 100%; height: 500px"></embed>
+
-
                </li>
+
-
                <br/>
+
-
 
+
-
                <li>Kyoto iGEM team: <br/><br/>
+
-
                    <div class="row">
+
-
                        <div class="col-md-7" style="margin-top: 30px">
+
-
                            <p>We help Kyoto iGEM team to charaterise their parts. They sent 13 parts to us. First, we transformed their parts into <i>E.coli</i> and do sequence. Then We keep discussing how to design the construction and which gene should we use in the characterisation.</p>
+
-
                        </div>
+
-
 
+
-
                        <div class="col-md-5">
+
-
                            <img class="img-responsive" src="https://static.igem.org/mediawiki/igem.org/6/6d/HUMANPRACTICE_2.jpg" alt-src="./images/Human_practice/HUMANPRACTICE_2.jpg" style="margin-right: 30px">
+
-
                        </div>
+
-
                    </div>
+
-
                </li>
+
-
               
+
-
                <li>NTU_Taida iGEM team: <br/><br/>
+
-
                    <div class="row">
+
-
                        <div class="col-md-11" style="margin-top: 30px">
+
-
                            <p>Because we are in the same university, we exchange a lot of information to each other. For expample, they shared the experience in iGEM compeitiotn to us and we help them conduct some experiment like preparing competent cells and transformation.</p>
+
-
                            <p>In addition, we help each other to charaterise the parts. For example, they help us to check the expression of SrUCP protein(BBa_K1125000).</p>
+
-
                            <p>We also help them in the part "BBa_K1157013". This part is very important, because this biosensor is constructed to sense C-4 AHL molecules through a method different from BBa_K1157012. This time when AHL molecules are sensed, it activates Rhl promoter, which initiates the production of CI. Therefore, CI inhibits pCI and the expression of reporter mCherry is stopped. When compared to control group, the results will be expected to express lower fluorescence level when there is existence of AHL molecules.</p>
+
-
                        </div>
+
-
                        <div class="row text-center">
+
-
                            <img class="img-responsive"src="https://static.igem.org/mediawiki/igem.org/6/66/Cooperation_taida.png" alt-src="./images/cooperation_taida.jpg" style="margin-right: 30px">
+
-
                            </div>
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     <script type="text/template" id="team">
     <script type="text/template" id="team">
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             </section>
             </section>
             <div class="container divide essay">
             <div class="container divide essay">
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            <img class="pull-right" src="" alt-src="./images/MEETING/Meeting-(27).jpg" width=500>
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                <img class="pull-right" src="https://static.igem.org/mediawiki/igem.org/e/e2/Meeting-%2827%29.jpg" alt-src="./images/MEETING/Meeting-(27).jpg" width=500>
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                 <p><i><u>Rhodotorula</u></i> is pigment produce yeast quite easily identifiable by distinctive orange/red colonies when grown on SDA. This distinctive color is the result of pigments that the yeast creates to block out certain wavelengths of light that would otherwise be damaging to the cell. Colony color can vary from being cream colored to orange/red/pink or yellow.<br/>
+
                 <p>
-
                     &nbsp&nbsp&nbsp&nbsp&nbsp&nbsp&nbsp&nbsp<i><u>Rhodotorula</u></i> is a common environmental inhabitant. It can be cultured from soil, water, and air samples. It is able to scavenge nitrogenous compounds from its environment remarkably well, growing even in air which has been carefully cleaned of any fixed nitrogen contaminants. In such conditions, the nitrogen content of the dry weight of <i><u>Rhodotorula</u></i> can drop as low as 1%, compared to around 14% for most bacteria growing in normal conditions. <br/>
+
                    <i><u>Rhodotorula</u></i>is pigment produce yeast quite easily identifiable by distinctive orange/red colonies when grown on SDA. This distinctive color is the result of pigments that the yeast creates to block out certain wavelengths of light that would otherwise be damaging to the cell. Colony color can vary from being cream colored to orange/red/pink or yellow.
-
                     &nbsp&nbsp&nbsp&nbsp&nbsp&nbsp&nbsp&nbspThe increasing cost of vegetable oils is turning the use of microbial lipids into a competitive alternative for the production of biodiesel fuel. The oleaginous yeast <i><u>Rhodotorula glutinis</u></i> is able to use a broad range of carbon sources for lipid production, and is able to resist some of the inhibitors commonly released during hydrolysis of lignocellulose materials. <br/>
+
                </p>
-
                     &nbsp&nbsp&nbsp&nbsp&nbsp&nbsp&nbsp&nbsp&nbsp So we choose <i>R.g.</i> for the Expression system.<br/>
+
                <p>
-
                     &nbsp&nbsp&nbsp&nbsp&nbsp&nbsp&nbsp&nbspThermogenic yeast relies on cultural media to grow and to generate heat. This way, the Yeastherm is kind of like burning media as fuel, which is expensive compared with other heating methods such as gas, coal, or electricity. To make our project a more competitive choice when considering large-scale heat production such as heating up a pound in the winter, it is necessary to reduce the cost of culturing yeast. Thanks to previous study in the field of biofuel, we have several solutions of cheaper substitutions of cultural medium contents.<br/>
+
                     <i><u>Rhodotorula</u></i> is a common environmental inhabitant. It can be cultured from soil, water, and air samples. It is able to scavenge nitrogenous compounds from its environment remarkably well, growing even in air which has been carefully cleaned of any fixed nitrogen contaminants. In such conditions, the nitrogen content of the dry weight of <i><u>Rhodotorula</u></i> can drop as low as 1%, compared to around 14% for most bacteria growing in normal conditions.
-
                     &nbsp&nbsp&nbsp&nbsp&nbsp&nbsp&nbsp&nbspAccording to Jie Tao and his colleague’s study, agricultural and forestry residues can be used as an alternative of carbon source, taking advantage of <i><u>Rhodotorula glutinis’s</u></i> ability to assimilate xylose.[1]  Agricultural residues such as rice straw and corn stalk are usually burned after harvest. Using these materials not only lower the expense but also benefits the environment. Raw materials like rice or wheat straw are first cut into pieces of appropriate size. They are then hydrolyzed using sulfuric acid with boiling water bath, turninig into hemicellulosic hydrolyzate. Saccharides can be obtained in supernatant after centrifugation and washings of the residue with hot water. <br/>
+
                </p>
-
                     &nbsp&nbsp&nbsp&nbsp&nbsp&nbsp&nbsp&nbspAfter expressing SrUCP in <i><u>Rhodotorula glutinis</u></i>, we will test for appropriate concentration for Agricultural residue extraction considering growth condition and heating power. The optimized heat power will then be used in large scale simulation as well as calculation of cost reduced. If time permitted, we will dig further into the component of the hemicellulosic hydrolyzate, as it is reviewed that there might be inhibiting compound.[2][3]<br/><br/>
+
                <p>
 +
                     The increasing cost of vegetable oils is turning the use of microbial lipids into a competitive alternative for the production of biodiesel fuel. The oleaginous yeast <i><u>Rhodotorula glutinis</u></i> is able to use a broad range of carbon sources for lipid production, and is able to resist some of the inhibitors commonly released during hydrolysis of lignocellulose materials. <br/>
 +
                </p>
 +
                <p>
 +
                     So we choose <i>R.g.</i> for the Expression system.
 +
                </p>
 +
                <p>
 +
                     Thermogenic yeast relies on cultural media to grow and to generate heat. This way, the Yeastherm is kind of like burning media as fuel, which is expensive compared with other heating methods such as gas, coal, or electricity. To make our project a more competitive choice when considering large-scale heat production such as heating up a pound in the winter, it is necessary to reduce the cost of culturing yeast. Thanks to previous study in the field of biofuel, we have several solutions of cheaper substitutions of cultural medium contents.
 +
                </p>
 +
                <p>
 +
                     According to Jie Tao and his colleague’s study, agricultural and forestry residues can be used as an alternative of carbon source, taking advantage of <i><u>Rhodotorula glutinis’s</u></i> ability to assimilate xylose.[1]  Agricultural residues such as rice straw and corn stalk are usually burned after harvest. Using these materials not only lower the expense but also benefits the environment. Raw materials like rice or wheat straw are first cut into pieces of appropriate size. They are then hydrolyzed using sulfuric acid with boiling water bath, turninig into hemicellulosic hydrolyzate. Saccharides can be obtained in supernatant after centrifugation and washings of the residue with hot water.
 +
                </p>
 +
                <p>
 +
                     After expressing SrUCP in <i><u>Rhodotorula glutinis</u></i>, we will test for appropriate concentration for Agricultural residue extraction considering growth condition and heating power. The optimized heat power will then be used in large scale simulation as well as calculation of cost reduced. If time permitted, we will dig further into the component of the hemicellulosic hydrolyzate, as it is reviewed that there might be inhibiting compound.[2][3]<br/>
 +
                </p>
                     Reference:<br/>
                     Reference:<br/>
                     [1]Biodiesel generation from oleaginous yeast Rhodotorula glutinis with xylose assimilating capacity
                     [1]Biodiesel generation from oleaginous yeast Rhodotorula glutinis with xylose assimilating capacity
                     African Journal of Biotechnology Vol. 6 (18), pp. 2130-2134, 19 September 2007<br/>
                     African Journal of Biotechnology Vol. 6 (18), pp. 2130-2134, 19 September 2007<br/>
-
                     Available online at http://www.academicjournals.org/AJB<br/>
+
                     Available online at <a href="http://www.academicjournals.org/AJB">http://www.academicjournals.org/AJB</a><br/>
                     [2]Oil production by oleaginous yeasts using the hydrolysate from pretreatment of wheat straw with dilute sulfuric acid<br/>
                     [2]Oil production by oleaginous yeasts using the hydrolysate from pretreatment of wheat straw with dilute sulfuric acid<br/>
                     Bioresource Technology Volume 102, Issue 10, May 2011, Pages 6134–6140<br/>
                     Bioresource Technology Volume 102, Issue 10, May 2011, Pages 6134–6140<br/>
-
 
             </div>
             </div>
         </div>
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             <h1 class="header">Project Result</h1>
             <h1 class="header">Project Result</h1>
         </section>
         </section>
 +
        <div class="container">
 +
            <img class="img-responsive" src="https://static.igem.org/mediawiki/2013/e/e2/NTU_TAIWAN_Website_Under_Construction.gif" alt-src="images/Website_Under_Construction.gif">
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    </script>
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    <script type="text/template" id="Parts">
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        <section class="red-background">
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            <h1 class="header">Under Construction</h1>
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         <div class="container">
         <div class="container">
             <img class="img-responsive" src="https://static.igem.org/mediawiki/2013/e/e2/NTU_TAIWAN_Website_Under_Construction.gif" alt-src="images/Website_Under_Construction.gif">
             <img class="img-responsive" src="https://static.igem.org/mediawiki/2013/e/e2/NTU_TAIWAN_Website_Under_Construction.gif" alt-src="images/Website_Under_Construction.gif">

Revision as of 13:44, 27 September 2013

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