Team:Concordia/Modeling/js

From 2013.igem.org

Revision as of 19:42, 27 September 2013

var ProcessEngine = null; var DataToGraphPointRatio = 4; var g_Data = null; function PlotData ( ) {

   var gpGroupNumber = parseInt($('#gas-protein-group').val());
   var rGroupNumber = parseInt($('#gas-group').val());
   var gGroupNumber = parseInt($('#repressor-group').val());
   var ahlrGroupNumber =parseInt($('#ahlr-group').val());
   var ahlGroupNumber = parseInt($('#ahl-group').val());
   var groupNumbers = [gpGroupNumber,gGroupNumber,rGroupNumber,ahlrGroupNumber,ahlGroupNumber];
   
   var Group1Data = new Array();
   var Group2Data = new Array();
   var Group3Data = new Array();
   var Group4Data = new Array();
   var Group5Data = new Array();
   var AllGroupData = [Group1Data,Group2Data,Group3Data,Group4Data,Group5Data];
   if (g_Data != null)
   {
       
       for(var ii = 0; ii < g_Data.length; ++ii)
       {
         if (ii % DataToGraphPointRatio == 0)
         {
           var groupRows =[
           [g_Data[ii][0] ],
           [g_Data[ii][0] ],
           [g_Data[ii][0] ],
           [g_Data[ii][0] ],
           [g_Data[ii][0] ]
           ];
           for(var jj=1; jj < 6/*g_Data[ii].length*/; ++jj)
           {
             groupRows[groupNumbers[jj-1]-1].push( g_Data[ii][jj] );
           }
           
           for(var jj = 0; jj < AllGroupData.length; ++jj)
           {
             AllGroupData[jj].push (groupRows[jj] );
           }
         }
       }
       
       for(var ii = 0; ii < 5; ++ii)
       {
         var data = google.visualization.arrayToDataTable(AllGroupData[ii]);

         var options = {
           title: 'Group '+(ii+1).toString()+' Graphs'
         };
         
         var chart = new google.visualization.LineChart($('#graph-group'+(ii+1).toString())[0]);
         chart.draw(data, options);
       }
   }

} function GetParamObj() {

 var GasProteinHalfLife = parseFloat($('#GasProteinHalfLifeInput').val());
 var GasProteinStrength = parseFloat($('#GasProteinStrengthInput').val());
 var GasProteinSize = parseFloat($('#GasProteinSizeInput').val());
 var GasProteinThreshold = parseFloat($('#GasProteinThresholdInput').val());
 var GasProteinSensitivity = parseFloat($('#GasProteinSensitivityInput').val());
 var GasProduction = parseFloat($('#GasProductionInput').val());
 var GasDiffusion = parseFloat($('#GasDiffusionInput').val());
 
 var RepressorHalfLife = parseFloat($('#RepressorHalfLifeInput').val());
 var RepressorStrength = parseFloat($('#RepressorStrengthInput').val());
 var RepressorSize = parseFloat($('#RepressorSizeInput').val());
 var RepressorThreshold = parseFloat($('#RepressorThresholdInput').val());
 var RepressorSensitivity = parseFloat($('#RepressorSensitivityInput').val());
 
 var AhlrHalfLife = parseFloat($('#AhlrHalfLifeInput').val());
 var AhlrStrength = parseFloat($('#AhlrStrengthInput').val());
 var AhlrSize = parseFloat($('#AhlrSizeInput').val());
 var AhlrThreshold = parseFloat($('#AhlrThresholdInput').val());
 var AhlrSensitivity = parseFloat($('#AhlrSensitivityInput').val());
 
 var AhlHalfLife = parseFloat($('#AhlHalfLifeInput').val());
 var AhlStrength = parseFloat($('#AhlStrengthInput').val());
 var AhlSize = parseFloat($('#AhlSizeInput').val());
 var AhlThreshold = parseFloat($('#AhlThresholdInput').val());
 var AhlSensitivity = parseFloat($('#AhlSensitivityInput').val());
 
 
 var DeltaTime = parseFloat($('#DeltaTimeInput').val());
 
 var DataSize = parseFloat($('#DataSizeInput').val());
 
 var params = 
 {
   'GasProteinHalfLife' : GasProteinHalfLife ,
   'GasProteinStrength' : GasProteinStrength,
   'GasProteinSize' : GasProteinSize,
   'GasProteinThreshold' : GasProteinThreshold,
   'GasProteinSensitivity' : GasProteinSensitivity,
   
   'GasProduction' : GasProduction,
   'GasDiffusion' : GasDiffusion,
   
   'RepressorHalfLife' : RepressorHalfLife,
   'RepressorStrength' : RepressorStrength,
   'RepressorSize' : RepressorSize,
   'RepressorThreshold' : RepressorThreshold,
   'RepressorSensitivity' : RepressorSensitivity,
   
   'AhlrHalfLife' : AhlrHalfLife,
   'AhlrStrength' : AhlrStrength,
   'AhlrSize' : AhlrSize,
   'AhlrThreshold' : AhlrThreshold,
   'AhlrSensitivity': AhlrSensitivity,
   
   'DeltaTime' : DeltaTime,
   'DataSize' : DataSize
 }
 
 var _DataToGraphPointRatio = parseFloat($('#DataToGraphPointRatioInput').val());

 if(isNaN (_DataToGraphPointRatio) )
 {
   
 }
 else
 {
   DataToGraphPointRatio = _DataToGraphPointRatio;
 }
 
   
   var NameArray = 
 [
   'GasProteinHalfLife',
   'GasProteinStrength' ,
   'GasProteinSize' ,
   'GasProteinThreshold' ,
   'GasProteinSensitivity' ,
   
   'GasProduction' ,
   'GasDiffusion' ,
   
   'RepressorHalfLife' ,
   'RepressorStrength' ,
   'RepressorSize' ,
   'RepressorThreshold' ,
   'RepressorSensitivity' ,
   
   'DeltaTime' ,
   'DataSize' 
 ];
 if( DataToGraphPointRatio > 100)
 {
   alert("Your data-to-graph ratio is too large, 1 point will be graphed for each " + DataToGraphPointRatio + " data points. This may cause graphing aliasing");
 }

 return params;

}

function RunSimulation() {

 var params = GetParamObj();
 
 $('#bttnRun').attr('disabled',"disabled");
 $('#bttnRun').text('Running...');
   if(ProcessEngine != null)
 {
   ProcessEngine.postMessage({"command":"process", "vals":params });
 }
 else
 {
   alert("The background engine was not created successfully. See earlier error for details...");
 }

}

function GraphGas() {

 var params = GetParamObj();
 if(ProcessEngine != null)
 {
   ProcessEngine.postMessage({"command":"graph-gas", "vals":params });
 }
 else
 {
   alert("The background engine was not created successfully. See earlier error for details...");
 }

}

function GraphRep() {

 var params = GetParamObj();
 if(ProcessEngine != null)
 {
   ProcessEngine.postMessage({"command":"graph-rep", "vals":params });
 }
 else
 {
   alert("The background engine was not created successfully. See earlier error for details...");
 }

}

function OnMessage (data) {

 if(data.command == "process")
 {
     g_Data = data.vals;
     $('#bttnRun').text('Run'); 
     $('#bttnRun').removeAttr('disabled',"disabled"); 
     
     PlotData();
 }
 else if (data.command == 'graph-gas')
 {
   var plot_data = google.visualization.arrayToDataTable(data.vals[0]);

   var options = {
     title: 'Gas Rate Of Change'
   };

   var chart = new google.visualization.LineChart($('#gas-rate-graph')[0]);
   chart.draw(plot_data, options);
   
   plot_data = google.visualization.arrayToDataTable(data.vals[1]);

   options = {
     title: 'Gas Protein Rate Of Change'
   };

   var chart2 = new google.visualization.LineChart($('#gas-protein-rate-graph')[0]);
   chart2.draw(plot_data, options);
 }
 else if(data.command == 'graph-rep')
 {
   var plot_data = google.visualization.arrayToDataTable(data.vals);

   var options = {
     title: 'Repressor Rate Of Change'
   };

   var chart = new google.visualization.LineChart($('#rep-rate-graph')[0]);
   chart.draw(plot_data, options);
 }
 else
 {
   Log("Unrecognized command response received from background worker", 0 );
 }

}

function Initialize(arg1) {

 ProcessEngine = CreateBackgroundEngine("https://2013.igem.org/Team:Concordia/Modeling/background?action=raw", 
 OnMessage,
 false);
 
 if(ProcessEngine != null)
 {
   ProcessEngine.postMessage({"command":"process", "vals":null });
 }

 $('.parameter-section p').click( ToggleVisibilityClick  );
 $('.graph-label').click( ToggleVisibilityClick  );
 $('.parameters-label').click( ToggleVisibilityClick  );
 $('#bttnRun').click(RunSimulation);
 $('#bttnGraphGasRate').click(GraphGas);
 $('#bttnGraphRepRate').click(GraphRep);
 $('#gas-protein-group').change(function () {PlotData();} );
 $('#gas-group').change(function () {PlotData();} );
 $('#repressor-group').change(function () {PlotData();} );
 $('#ahl-group').change(function () {PlotData();} );
 $('#ahlr-group').change(function () {PlotData();} );

}

$(document).load(Initialize(0));