Team:Northwestern/methods
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<h1> Protocols </h1> | <h1> Protocols </h1> | ||
<div> | <div> | ||
- | + | <h2> Supplies </h2> | |
+ | <p> <a href="https://2013.igem.org/Team:Northwestern/makem9">Making M9 Media</a></p> | ||
<p> <a href="https://2013.igem.org/Team:Northwestern/makecells">Making Competent Cells</a></p> | <p> <a href="https://2013.igem.org/Team:Northwestern/makecells">Making Competent Cells</a></p> | ||
- | |||
<p> <a href="https://2013.igem.org/Team:Northwestern/transform">Transforming Competent Cells</a></p> | <p> <a href="https://2013.igem.org/Team:Northwestern/transform">Transforming Competent Cells</a></p> | ||
<p> <a href="https://2013.igem.org/Team:Northwestern/lb">Making LB Plates</a></p> | <p> <a href="https://2013.igem.org/Team:Northwestern/lb">Making LB Plates</a></p> | ||
- | + | <h2> Clonning </h2> | |
- | + | <p> <a href="https://2013.igem.org/Team:Northwestern/primers">Annealing Primers</a></p> | |
- | + | <p> <a href="https://2013.igem.org/Team:Northwestern/pcr">PCR Amplification</a></p> | |
- | + | <p> <a href="https://2013.igem.org/Team:Northwestern/pure">Purification</a></p> | |
- | + | ||
- | + | ||
<p> <a href="https://2013.igem.org/Team:Northwestern/preparegel">Preparing Gel</a></p> | <p> <a href="https://2013.igem.org/Team:Northwestern/preparegel">Preparing Gel</a></p> | ||
<p> <a href="https://2013.igem.org/Team:Northwestern/electrogel">Gel Electrophoresis</a></p> | <p> <a href="https://2013.igem.org/Team:Northwestern/electrogel">Gel Electrophoresis</a></p> | ||
<p> <a href="https://2013.igem.org/Team:Northwestern/extract">Gel Extraction</a></p> | <p> <a href="https://2013.igem.org/Team:Northwestern/extract">Gel Extraction</a></p> | ||
- | + | <p> <a href="https://2013.igem.org/Team:Northwestern/mini">Miniprep</a></p> | |
+ | <p> <a href="https://2013.igem.org/Team:Northwestern/digest">Restriction Digest</a></p> | ||
+ | <p> <a href="https://2013.igem.org/Team:Northwestern/ligate">Ligation</a></p> | ||
+ | <p> <a href="https://2013.igem.org/Team:Northwestern/preparegel">Preparing Gel</a></p> | ||
+ | |||
+ | <h2> Assays and Etc </h2> | ||
+ | <p> <a href="https://2013.igem.org/Team:Northwestern/fluo">Fluorescence Assay</a></p> | ||
</div> | </div> |
Revision as of 23:20, 27 September 2013
Methods Overview
Strains and Media
scherichia coli Top10 (Invitrogen) was used for all transformations and assays. Media included SOB for transformations and LB for overnight cultures. Transformed strains were grown at 37°C using Ampicillin resistance. Primers for PCR were purchased from Integrated DNA Technologies (IDT) and New England Biolabs (NEB) donated all of the restriction enzymes. All sequencing was conducted by the Northwestern Genomics Core.
Forming a Library of Constructs
e low copy plasmid pSB4A5 will be used for the different promoter constructs. The asr and gadA promoters were extracted from the E. coli genome via colony polymerase chain reaction (PCR). The constitutive promoters TacI and Lpp were amplified from pDAK1 and pDAK2 donated by the Jewett Lab6,7. The restriction enzyme cut sites EcoR1, Pst1, Spe1, and Xba1 were used in ligation to create the different constructs (Figure 3). When multiple parts were connected a mixed site was formed between Spe1 and Xba1, which cannot be cut, by any of the restriction enzymes. This leads to the benefit of not having a restriction site in the middle of the construct, and furthermore these standard restriction enzymes can always be used with the final dual-state promoter constructs.
![](https://static.igem.org/mediawiki/2013/thumb/6/60/Construct_one.png/750px-Construct_one.png)
![](https://static.igem.org/mediawiki/2013/thumb/5/5a/Construct_two.jpg/750px-Construct_two.jpg)
![](https://static.igem.org/mediawiki/2013/thumb/b/bb/Construct_three.jpg/750px-Construct_three.jpg)