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Team:DTU-Denmark/Experiments
From 2013.igem.org
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{{:Team:DTU-Denmark/Templates/StartPage|Experiments}} | {{:Team:DTU-Denmark/Templates/StartPage|Experiments}} | ||
| - | ==Toxicity of | + | |
| + | We did a variety of experiments to characterize the behaviour of transformed and untransformed E. coli in the presence of ammonium and nitrite. | ||
| + | * Toxicity of Relevant Ions | ||
| + | * Verify nitrite stability in anaerobic, untransformed ''E. coli'' | ||
| + | |||
| + | In order to verify and characterize our transformants, we performed the following experiments: | ||
| + | * Measure production of N<sub>2</sub>O from Nitrite NO<sub>2</sub><sup>-</sup> anaerobically | ||
| + | * Measure consumption of Ammonium in Mutant 1 transformants compared to native ''E. coli'' | ||
| + | |||
| + | Finally, in order to see if the long term behaviour of our Nir transformant, we grew it in a bioreactor. | ||
| + | |||
| + | ==Toxicity of Relevant Ions == | ||
Determine whether the ions nitrite, nitrate and ammonium are toxic to ''E. coli'', and at what concentration. This experiment will use the Biolector to grow an ''E. coli'' strain that constitutively expresses RFP in the presence of these ions (at a range of concentrations) to determine the OD and fluorescence of the cells as a proxy for growth. | Determine whether the ions nitrite, nitrate and ammonium are toxic to ''E. coli'', and at what concentration. This experiment will use the Biolector to grow an ''E. coli'' strain that constitutively expresses RFP in the presence of these ions (at a range of concentrations) to determine the OD and fluorescence of the cells as a proxy for growth. | ||
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== Verify nitrite stability in anaerobic, untransformed ''E. coli'' == | == Verify nitrite stability in anaerobic, untransformed ''E. coli'' == | ||
| - | + | To make sure that any nitrite we are able to produce from Mutant 1 will not be consumed by any of the pathways in native ''E. coli'', we grew ''E. coli'' anaerobically in the presence of varying concentrations of nitrite and measured the amount of ammonia and nitrite present. | |
[[Team:DTU-Denmark/Experiment1a|Experiment 1a]] | [[Team:DTU-Denmark/Experiment1a|Experiment 1a]] | ||
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[[Team:DTU-Denmark/Experiment2|Experiment 2]] | [[Team:DTU-Denmark/Experiment2|Experiment 2]] | ||
| - | == Measure consumption of Ammonium in Mutant 1 transformants compared to native ''E. coli'' | + | == Measure consumption of Ammonium in Mutant 1 transformants compared to native ''E. coli'' == |
Grow AMO and HAO transformants aerobically in the presence of ammonia; measure concentration of ammonia. | Grow AMO and HAO transformants aerobically in the presence of ammonia; measure concentration of ammonia. | ||
Revision as of 15:33, 28 September 2013
Experiments
We did a variety of experiments to characterize the behaviour of transformed and untransformed E. coli in the presence of ammonium and nitrite.
- Toxicity of Relevant Ions
- Verify nitrite stability in anaerobic, untransformed E. coli
In order to verify and characterize our transformants, we performed the following experiments:
- Measure production of N2O from Nitrite NO2- anaerobically
- Measure consumption of Ammonium in Mutant 1 transformants compared to native E. coli
Finally, in order to see if the long term behaviour of our Nir transformant, we grew it in a bioreactor.
Contents |
Toxicity of Relevant Ions
Determine whether the ions nitrite, nitrate and ammonium are toxic to E. coli, and at what concentration. This experiment will use the Biolector to grow an E. coli strain that constitutively expresses RFP in the presence of these ions (at a range of concentrations) to determine the OD and fluorescence of the cells as a proxy for growth.
Verify nitrite stability in anaerobic, untransformed E. coli
To make sure that any nitrite we are able to produce from Mutant 1 will not be consumed by any of the pathways in native E. coli, we grew E. coli anaerobically in the presence of varying concentrations of nitrite and measured the amount of ammonia and nitrite present.
Measure production of N2O from Nitrite NO2- anaerobically
Grow E. coli and P.aeroginosa anaerobically in the presence of varying concentrations of nitrite; measure the amount of nitrous oxide produced.
Measure consumption of Ammonium in Mutant 1 transformants compared to native E. coli
Grow AMO and HAO transformants aerobically in the presence of ammonia; measure concentration of ammonia.
Growth of Nir transformant in Bioreactor
