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Team:Heidelberg/Templates/Del week10 EG
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===Amplification from FS_04 to FS_07; 11.1 kb=== | ===Amplification from FS_04 to FS_07; 11.1 kb=== | ||
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[[File:Heidelberg_20130706 DelEG DelAE.png|150px|thumb|PCR for amplification of del fragments E-G and A-E, AE+=PCR AE with DMSO, AE-=PCR without DMSO, M= Marker; wanted amplicon sizes are: AE=5.3kbp, EG=11.0]] | [[File:Heidelberg_20130706 DelEG DelAE.png|150px|thumb|PCR for amplification of del fragments E-G and A-E, AE+=PCR AE with DMSO, AE-=PCR without DMSO, M= Marker; wanted amplicon sizes are: AE=5.3kbp, EG=11.0]] | ||
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[[File:Heidelberg_20130706 DelEG DelAE cut.png|150px|thumb|PCR for amplification of del fragments AE and EG, cut]] | [[File:Heidelberg_20130706 DelEG DelAE cut.png|150px|thumb|PCR for amplification of del fragments AE and EG, cut]] | ||
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:'''Reaction''' | :'''Reaction''' | ||
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{| class="wikitable" | {| class="wikitable" | ||
Revision as of 19:14, 3 October 2013
06-07-2013
Amplification from FS_04 to FS_07; 11.1 kb
- Reaction
| what | µl |
|---|---|
| D. acidovorans DSM-39 | 1 |
| FS_04: (1/10) | 1 |
| FS_07: (1/10) | 1 |
| Phusion Master Mix | 10 |
| DMSO | 1/- |
| dd H2O | 6/7 |
- Conditions
| Biorad MyCycler | ||
|---|---|---|
| Cycles-PCR | temperature [°C] | Time [s] |
| 1 | 98 | 10 |
| 12 | 98 | 1 |
| 68 ↓ 0.5 | 5 | |
| 72 | 3 min | |
| 18 | 98 | 1 |
| 66 | 5 | |
| 72 | 3 min | |
| 1 | 72 | 10 min |
| 1 | 4 | inf |
Results:
- Amplification of DelEG worked but another unexpected product was amplified as well
- band was cut out avoiding contamination with other product and DNA purified using QIAquick Gel Extraction Kit
