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Team:Heidelberg/Templates/NRPS-W-14
From 2013.igem.org
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JuliaS1992 (Talk | contribs) (Created page with " == Database redesign == !! To be done by Konrad !! == GUI extension == !! To be done by Nils !! == Draft of PFAM querying == In the experimental parts, we determined a first r...") |
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== Database redesign == | == Database redesign == | ||
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== GUI extension == | == GUI extension == | ||
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== Draft of PFAM querying == | == Draft of PFAM querying == | ||
In the experimental parts, we determined a first rough estimate of NRPS domain boundaries based on Pfam. Thus we also wanted our software to use the Pfam predictions to make it easier to semi-automatically add new domains into our database. A first test Python script was written which queried the Pfam API using the Requests library according to the online documentation and then parsed the XML output. The Biopython library also proved to be of great help. | In the experimental parts, we determined a first rough estimate of NRPS domain boundaries based on Pfam. Thus we also wanted our software to use the Pfam predictions to make it easier to semi-automatically add new domains into our database. A first test Python script was written which queried the Pfam API using the Requests library according to the online documentation and then parsed the XML output. The Biopython library also proved to be of great help. | ||
Revision as of 03:32, 5 October 2013
Database redesign
GUI extension
Draft of PFAM querying
In the experimental parts, we determined a first rough estimate of NRPS domain boundaries based on Pfam. Thus we also wanted our software to use the Pfam predictions to make it easier to semi-automatically add new domains into our database. A first test Python script was written which queried the Pfam API using the Requests library according to the online documentation and then parsed the XML output. The Biopython library also proved to be of great help.
