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| Line 9: |
Line 9: |
| | <body> | | <body> |
| | | | |
| - | <p id="Command">Enter the nucleotide sequence below!</p> | + | <p id="Command">Enter a nucleotide sequence below!</p> |
| | | | |
| | <input type="text" id="EnteredSequence"> Enter sequence! | | <input type="text" id="EnteredSequence"> Enter sequence! |
| Line 15: |
Line 15: |
| | <input type="button" onclick="main_table_calc()" value="Click here to create table"> | | <input type="button" onclick="main_table_calc()" value="Click here to create table"> |
| | | | |
| - | <p id="CountingResult"></p> | + | <p id="htmlExplanation"></p> |
| - | <p id="newoutput"></p> | + | <p id="htmlTable"></p> |
| | + | <br> |
| | + | <p id="wikiExplanation"></p> |
| | + | <p id="wikiTable"></p> |
| | | | |
| | </body> | | </body> |
| | </html> | | </html> |
| - |
| |
| - |
| |
| - |
| |
| - | =Sample Output=
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| - |
| |
| - | {|cellspacing="0" border="1"
| |
| - | |colspan="20"|'''Automatically determined parameters using the [http://www.mediawiki.org/wiki/Table BioBrick-AutoAnnotator]'''
| |
| - | |-
| |
| - | |colspan="10"|BioBrick: BBa_K1159000
| |
| - | |colspan="10"|Used open reading frame from position ?x? to ?y?.
| |
| - | |-
| |
| - | |colspan="2"|A (Ala)
| |
| - | |colspan="2"|1 (5.00%)
| |
| - | |colspan="2"|R (Arg)
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| - | |colspan="2"|1 (5.00%)
| |
| - | |colspan="2"|N (Asn)
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| - | |colspan="2"|1 (5.00%)
| |
| - | |colspan="2"|D (Asp)
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| - | |colspan="2"|2 (10.00%)
| |
| - | |colspan="2"|C (Cys)
| |
| - | |colspan="2"|1 (5.00%)
| |
| - | |-
| |
| - | |colspan="2"|Q (Gln)
| |
| - | |colspan="2"|1 (5.00%)
| |
| - | |colspan="2"|E (Glu)
| |
| - | |colspan="2"|2 (10.00%)
| |
| - | |colspan="2"|G (Gly)
| |
| - | |colspan="2"|1 (5.00%)
| |
| - | |colspan="2"|H (His)
| |
| - | |colspan="2"|1 (5.00%)
| |
| - | |colspan="2"|I (Ile)
| |
| - | |colspan="2"|0 (0.00%)
| |
| - | |-
| |
| - | |colspan="2"|L (Leu)
| |
| - | |colspan="2"|0 (0.00%)
| |
| - | |colspan="2"|K (Lys):
| |
| - | |colspan="2"|1 (5.00%)
| |
| - | |colspan="2"|M (Met)
| |
| - | |colspan="2"|1 (5.00%)
| |
| - | |colspan="2"|F (Phe)
| |
| - | |colspan="2"|2 (10.00%)
| |
| - | |colspan="2"|P (Pro)
| |
| - | |colspan="2"|1 (5.00%)
| |
| - | |-
| |
| - | |colspan="2"|S (Ser)
| |
| - | |colspan="2"|1 (5.00%)
| |
| - | |colspan="2"|T (Thr)
| |
| - | |colspan="2"|0 (0.00%)
| |
| - | |colspan="2"|W (Trp)
| |
| - | |colspan="2"|1 (5.00%)
| |
| - | |colspan="2"|Y (Tyr)
| |
| - | |colspan="2"|1 (5.00%)
| |
| - | |colspan="2"|V (Val)
| |
| - | |colspan="2"|1 (5.00%)
| |
| - | |-
| |
| - | |colspan="2"|'''Amino acid counting:'''
| |
| - | |colspan="4"|Total number of amino acids (aa):
| |
| - | |colspan="2"|20
| |
| - | |colspan="4"|Number of positively charged aa (Arg + Lys):
| |
| - | |colspan="2"|2
| |
| - | |colspan="4"|Number of negatively charged aa (Asp + Glu):
| |
| - | |colspan="2"|4
| |
| - | |-
| |
| - | |colspan="2"|'''Biochemical parameters:'''
| |
| - | |colspan="4"|Molecular weight [Da]:
| |
| - | |colspan="2"|2459.69
| |
| - | |colspan="4"|Theoretical pI:
| |
| - | |colspan="2"|4.75
| |
| - | |colspan="4"|Extinction coefficient:
| |
| - | |colspan="2"|7052.5 (all Cys as cystine), 6990 (no Cys as cystine)
| |
| - | |-
| |
| - | |colspan="2"|'''Estimated half-life:'''
| |
| - | |colspan="4"|Mammals:
| |
| - | |colspan="2"|4.4 hour
| |
| - | |colspan="4"|Yeast:
| |
| - | |colspan="2"|>20 hour
| |
| - | |colspan="4"|''E. coli'':
| |
| - | |colspan="2"|>10 hour
| |
| - | |-
| |
| - | |colspan="2"|'''Codon usage:'''
| |
| - | |colspan="4"|Mammals:
| |
| - | |colspan="2"|?good?
| |
| - | |colspan="4"|Yeast:
| |
| - | |colspan="2"|?Ok?
| |
| - | |colspan="4"|''E. coli'':
| |
| - | |colspan="2"|?bad ?
| |
| - | |-
| |
| - | |colspan="3"|'''RFC standard:'''
| |
| - | |colspan="17"|This is a RFC 25 BioBrick, thus ATGGCCGGC and ACCGGT were added to the 5' and 3' ends.
| |
| - | |-
| |
| - | |colspan="20"| The BioBrick-AutoAnnotator was created by [https://2013.igem.org/Team:TU-Munich TU-Munich 2013] iGEM team. For information please read the [https://2013.igem.org/Team:TU-Munich/Results/Software description].
| |
| - | |}
| |
"
